Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04210 and BL00355

See Amino acid alignment / Visit BSNT_04210 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:18
# Commandline: needle
#    -asequence dna-align/BSNT_04210___ysdA.1.5803.seq
#    -bsequence dna-align/BL00355___ysdA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04210___ysdA-BL00355___ysdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04210___ysdA-BL00355___ysdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04210___ysdA
# 2: BL00355___ysdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 303
# Identity:     164/303 (54.1%)
# Similarity:   164/303 (54.1%)
# Gaps:          72/303 (23.8%)
# Score: 358.5
# 
#
#=======================================

BSNT_04210___      1 ATGATTATTGCAGCTTAT-TTGTTAT---TGAT-----TAATCTG-TGCG     40
                            |||...||.|| |.|.|||   ||||     |||.|.| |.||
BL00355___ysd      1 -------TTGACTCTCATATGGATATACATGATCCTCATAAACGGATACG     43

BSNT_04210___     41 GTTTTTGGGTGATG---GGCATTGACAAACGCAAAGCG--CAGCAGCACA     85
                     ||||||...|.|||   |.|   ||.||.|..||||||  |||..|  ||
BL00355___ysd     44 GTTTTTTCTTAATGAAAGCC---GATAAGCAAAAAGCGGTCAGAGG--CA     88

BSNT_04210___     86 AGTGGAGAATTTCTGAAGACCG----------GCTGTGGCTGATAGCCAT    125
                     |.|||||..|.|||||...|||          |.||.|||||.|      
BL00355___ysd     89 AATGGAGGGTGTCTGAGCGCCGCATCTGGCTCGTTGCGGCTGCT------    132

BSNT_04210___    126 CGTATTTGGAGCGCTC----GGTGTCTGGCTTGGCATGCAAACC--TTCA    169
                         ||||    ||||    ||.||||||.|.||.|||  |..|  ||||
BL00355___ysd    133 ----TTTG----GCTCCGCAGGCGTCTGGTTCGGGATG--ATGCGGTTCA    172

BSNT_04210___    170 GACATAAAACGAAACACGCTTCTTTTAAGTACGGAGTACCGCTTCTTCTG    219
                     |||||||.||.||||||..|||.||.|.|..|||..|.||..||.|.||.
BL00355___ysd    173 GACATAAGACAAAACACCTTTCCTTCAGGCTCGGCATTCCTTTTTTGCTC    222

BSNT_04210___    220 GTAATTGAAGCGATTCTCATC-GCTATTTACTACAGCCCGTTTGATTTAT    268
                     |...|..||||..||.|.|.| ||| ||||          |.||||..||
BL00355___ysd    223 GGCGTGCAAGCTGTTTTGACCGGCT-TTTA----------TATGATGAAT    261

BSNT_04210___    269 AA-    270
                     .| 
BL00355___ysd    262 TAA    264


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