Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04206 and BL00354
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_04206___ysdC.1.5803.seq
# -bsequence dna-align/BL00354___ysdC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04206___ysdC-BL00354___ysdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04206___ysdC-BL00354___ysdC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04206___ysdC
# 2: BL00354___ysdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1109
# Identity: 832/1109 (75.0%)
# Similarity: 832/1109 (75.0%)
# Gaps: 46/1109 ( 4.1%)
# Score: 3053.0
#
#
#=======================================
BSNT_04206___ 1 ATGGCAAAATTAGATGAAACATTGACCATGCTGAAAGATTTAACAGATGC 50
||||||||..|.|||||||||||||..|||||.||.||.|||||.|||||
BL00354___ysd 1 ATGGCAAAGCTTGATGAAACATTGATGATGCTAAAGGAATTAACTGATGC 50
BSNT_04206___ 51 AAAAGGCATACCGGGCAATGAAAGAGAAGTAAGGCAAGTGATGAAATCAT 100
||||||.||.||||..|||||||.||||...||.|||||.||||||||.|
BL00354___ysd 51 AAAAGGAATTCCGGCGAATGAAAAAGAACCCAGACAAGTCATGAAATCGT 100
BSNT_04206___ 101 ACATAGAACCATTTGCTGATGAGGTGACAACAGATCGCCTGGGCAGTTTA 150
||||||||||.|||||.||.|||||.||.|||||..|.|||||.||.|||
BL00354___ysd 101 ACATAGAACCGTTTGCCGACGAGGTTACGACAGACAGACTGGGAAGCTTA 150
BSNT_04206___ 151 ATTGCCAAAAAAACTGG---TGCAGAAAACGGCCCGAAAATTATGATCGC 197
||.||.|||||.||||| .||.| ||||.|||||.||||||||.||
BL00354___ysd 151 ATCGCAAAAAAGACTGGACAGGCTG---ACGGACCGAAGATTATGATTGC 197
BSNT_04206___ 198 CGGACATTTGGATGAAGTCGGCTTTATGGTGACACAAATC----ACAGAT 243
|||.|||.|.|||||.|||||.||||||||.||.|..||| ||||
BL00354___ysd 198 CGGCCATCTTGATGAGGTCGGTTTTATGGTTACGCGGATCGATGACAG-- 245
BSNT_04206___ 244 AAAGGCTTTATCCGTTTTCAAACCGTTGGCGGCTGGTGG-GCTCAGGTTA 292
.||||.|.||||.|||||.||.||.||.||||||||| || |||||.|
BL00354___ysd 246 --GGGCTATCTCCGCTTTCAGACGGTCGGAGGCTGGTGGAGC-CAGGTCA 292
BSNT_04206___ 293 TGCTTGCCCAGCGCGTCACCATCGTCACAAAAAAAGGAGAAATCACTGGG 342
||||.||.|||||.||.||..||||.|||||.|||||.||.|||||.||.
BL00354___ysd 293 TGCTGGCGCAGCGTGTGACGGTCGTGACAAAGAAAGGCGACATCACCGGT 342
BSNT_04206___ 343 GTTATCGGCTCTAAGCCGCCGCATATTTTATCTCCTGAAGCAAGAAAAAA 392
.|.|||||.||.|||||.||.|||.|..|.||||..||.||.||||||||
BL00354___ysd 343 ATCATCGGTTCAAAGCCTCCTCATGTCCTGTCTCAGGAGGCGAGAAAAAA 392
BSNT_04206___ 393 ATCAGTGGAAATAAAAGACATGTTTATTGATATTGGAGCTTCAAGCCGGG 442
|||.||.||.||.|||||.||||||||.||.||.||.||.||.|||.|||
BL00354___ysd 393 ATCGGTCGATATTAAAGATATGTTTATCGACATCGGGGCGTCGAGCAGGG 442
BSNT_04206___ 443 AAGAAGCCTTGGAGTGGGGTATACTCCCGGGAGATATGATCGTTCCGCAT 492
|.|||||..||||.|||||..|.||.||||||||...|.||||.||..|.
BL00354___ysd 443 AGGAAGCGATGGAATGGGGCGTTCTTCCGGGAGACCAGGTCGTCCCTTAC 492
BSNT_04206___ 493 TTTGAATTTACGGTCATGAACAATGAAAAATTCCTACTCGCAAAGGCGTG 542
||||||||||||||.|||||.|||||||||.|.||.||.||.||.||.||
BL00354___ysd 493 TTTGAATTTACGGTGATGAATAATGAAAAAATGCTGCTTGCCAAAGCATG 542
BSNT_04206___ 543 GGACAACCGCATTGGCTGTGCGATTGCAATTGATGTGTTAAGAAACTTAC 592
|||||||||.||.|||||.|||||.|||||.||.|||.|.|.||||.| .
BL00354___ysd 543 GGACAACCGTATCGGCTGCGCGATCGCAATCGACGTGCTGAAAAACCT-G 591
BSNT_04206___ 593 AAAACA-CAGATCATCCAAATATAGTGTATGGCGTCGGAACCGTGCAGGA 641
|||..| |.||||||||.|||.|.||.||.||||||||||||||.||.||
BL00354___ysd 592 AAAGGAGCCGATCATCCGAATGTCGTCTACGGCGTCGGAACCGTACAAGA 641
BSNT_04206___ 642 GGAAGTCGGCCTGAGGGGAGCGAAAACGGCTGCACACACCATTCAGCCTG 691
||||||.||.|||||.||.||||||||.||.||.||.||.||..||||||
BL00354___ysd 642 GGAAGTAGGGCTGAGAGGCGCGAAAACAGCCGCGCATACGATCAAGCCTG 691
BSNT_04206___ 692 ATATTGCGTTTGGTGTTGATGTAGGGATAGCAGGAGACACGCCTGGCATT 741
||||.||.||.|||||.||.||.||.||.||.||.||.||||||||.|||
BL00354___ysd 692 ATATCGCTTTCGGTGTCGACGTGGGAATTGCGGGTGATACGCCTGGTATT 741
BSNT_04206___ 742 TCCGAGAAAGAAGC-GCAGAGCAAAATGGGCAAAGGCCCGCAGATTATCG 790
.||||.|||||..| ||| |||||||||||.||||||||||||||.||..
BL00354___ysd 742 ACCGAAAAAGAGTCGGCA-AGCAAAATGGGAAAAGGCCCGCAGATCATAC 790
BSNT_04206___ 791 TTTACGATGCATCCATGGTCTCTCACAAAGGTTTGCGCGA-TGCAGTTGT 839
||||.||||||||.|||||.||.||.|||||..|.||||| | ||||
BL00354___ysd 791 TTTATGATGCATCAATGGTGTCCCATAAAGGGCTTCGCGACT----TTGT 836
BSNT_04206___ 840 AGCCACT---GCGGAGGAAGCCGGCATTCCGTACCAATTTGATGCCATTG 886
|.|.|.| ||.||.|||||||||||||||||.||||||||.|||.|..
BL00354___ysd 837 AACGAATGTGGCAGATGAAGCCGGCATTCCGTATCAATTTGACGCCCTCT 886
BSNT_04206___ 887 CCGGCGGCGGAACTGATTCTGGTGCCATCCATTTGACGGCGAATGGTGTT 936
|.|||||.|||||.|||||.||..|.|||||..|.||.|||||.||.||.
BL00354___ysd 887 CAGGCGGAGGAACAGATTCAGGATCAATCCACCTTACCGCGAACGGAGTG 936
BSNT_04206___ 937 CCTGCGCTGTCCATTACCATTGCAACCCGCTACATTCATACGCACGCGGC 986
|||||.|||||.||.||.||.||.||..|.||.||.||||||||||||||
BL00354___ysd 937 CCTGCCCTGTCGATCACGATCGCGACGAGGTATATCCATACGCACGCGGC 986
BSNT_04206___ 987 CATGCTGCATCGTGATGATTATGAAAACGCGGTAAAGTTAATTACAGAAG 1036
||||||.||.||.|||||.||||||.|.||||||||.||||||||.||||
BL00354___ysd 987 CATGCTTCACCGGGATGACTATGAACATGCGGTAAAATTAATTACCGAAG 1036
BSNT_04206___ 1037 TCATTAAGAAGTTA-GACCG-----AAAAACGGTTGACGAAATTACGT-- 1078
||||||| | |||.| |.|.||||||.|..|.|||||||
BL00354___ysd 1037 TCATTAA------ACGACTGGATAAAGAGACGGTTCAAAACATTACGTTT 1080
BSNT_04206___ 1079 -ACCAATAA 1086
||..|
BL00354___ysd 1081 GACTGA--- 1086
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