Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04198 and BL00349
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_04198___araM.1.5803.seq
# -bsequence dna-align/BL00349___araM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04198___araM-BL00349___araM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04198___araM-BL00349___araM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04198___araM
# 2: BL00349___araM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1345
# Identity: 772/1345 (57.4%)
# Similarity: 772/1345 (57.4%)
# Gaps: 299/1345 (22.2%)
# Score: 1916.5
#
#
#=======================================
BSNT_04198___ 1 ATGAAT--CGT-ATCGCAGCTG--------ACGTTCAGCG--TGCTTTTG 37
|||||| |.| |||.|...|| ||.||..||| ||| |
BL00349___ara 1 ATGAATGACTTGATCTCTTATGTGAAAAAAACTTTGGGCGCATGC----G 46
BSNT_04198___ 38 AACACGCCGGAGAA------AAGACGTTGCCTATAAAAGTTGAAGAAATT 81
||..|| ||| |..|| ||..|.|.|||.|||.||||.
BL00349___ara 47 AATGCG-----GAACCGTCCACCAC----CCGCTTACAGTCGAAAAAATC 87
BSNT_04198___ 82 GTTCTCGG------------TAAGCAAGCAGCTGATTCGCTTTTGGATTA 119
|...|||| |.|||||| ||||| ..||||||.|
BL00349___ara 88 GCGATCGGCGACAATGCTGTTGAGCAAG-AGCTG-CCCGCTTTCG----- 130
BSNT_04198___ 120 TGTAAAACG----------AAAAAACTACAAACATATTGTCCTTGTTTGC 159
|| |||.|| |||||.|..| |||| .|||..
BL00349___ara 131 TG-AAATCGGCTTCCTATAAAAAAGCCGC--------TGTC---ATTTAT 168
BSNT_04198___ 160 GACGCGAATACACACCGCA---TT-----GCA---GGAATTG-------- 190
||.| |.||| ||||.| || ||| || ||||
BL00349___ara 169 GATG---AAACA-ACCGGACGGTTAGCCGGCAAGCGG-ATTGCCTCTCTT 213
BSNT_04198___ 191 ATTTAGAAAACCGACTGAATCAAGCAGGATTTCAGGCCGAGTGC--CTGA 238
.||.||.||| ||.||||| |.|.|| ||| |||| |||
BL00349___ara 214 CTTGAGGAAA-CGGCTGAA------ACGGTT-----CCG-GTGCTGCTG- 249
BSNT_04198___ 239 TCATTCCAGAA---AATGAAGCCGGAGTTGTGACAGCTGATG----AACG 281
||| ||||||||.||.|.||||||.||.|||| |||
BL00349___ara 250 --------GAAGCTAATGAAGCGGGCGATGTGACGGCGGATGAGCAAAC- 290
BSNT_04198___ 282 ATCGCT-----CATTCA----TGTGCTGATCCATACGAAACAAACAACGG 322
||.|.| ||||.| |||.|.|||..|| .|||
BL00349___ara 291 ATTGGTGAGTGCATTGATCGGTGTACCGATTGAT------------GCGG 328
BSNT_04198___ 323 ATGTCATGATCGCAGTCGGTTCGGGCACGATTCATGATATCGTC-CGCTT 371
||||..|.||.||.|.|||..|||||||||||||.||.|||||| .|.||
BL00349___ara 329 ATGTACTAATTGCGGCCGGAGCGGGCACGATTCACGACATCGTCAGGTTT 378
BSNT_04198___ 372 TGCGGCGTTTCAAAGAG--ATTTGCCGTTTATTTCTTATCCGACTGCTCC 419
||| ||.|.|||..|.| ||| |||||||||||...|||.||.|||||
BL00349___ara 379 TGC-GCCTATCAGCGCGGCATT--CCGTTTATTTCAGTTCCTACGGCTCC 425
BSNT_04198___ 420 ATCTGTAGACGGTTTTACATCAGCCGGTGCGCCGATTATTTTATACGGCA 469
.||.||.|||||||||||.||||||||.||.|||.|.||||||.|.||.|
BL00349___ara 426 GTCGGTTGACGGTTTTACTTCAGCCGGCGCACCGCTGATTTTAAAAGGAA 475
BSNT_04198___ 470 CGAAAACA-ACCATTCAAACGAAGGCCCCG-TCTGCACTGTTCGCTGACC 517
.| ||||| ||..|||||||||..||.||| || ||.||.||.||.||..
BL00349___ara 476 AG-AAACAGACGGTTCAAACGACAGCGCCGATC-GCGCTTTTTGCCGATT 523
BSNT_04198___ 518 TGGATCTATT---AAAAGCGGCACCCCAGTCAATGGTGGCGGCTGGATTT 564
||||.||.|| ..||||| ||.|||...|||||.||.||.||.|||
BL00349___ara 524 TGGAGCTCTTGTGTCAAGCG---CCGCAGAACATGGTAGCCGCAGGTTTT 570
BSNT_04198___ 565 GGTGACATGCTCGGTAAAATAACATCTTTAGCAGATTGGGAAATATCCCG 614
||.||.||||||||.||..|.||.||..|.||.||||||||.||.||||
BL00349___ara 571 GGCGATATGCTCGGCAAGGTGACGTCGCTTGCGGATTGGGAGATTTCCC- 619
BSNT_04198___ 615 GCAT-CTTGCCGGCGAGCCTTATT-------CGCCTGCAGGAGCTAAGAT 656
||.| ||||||||||||||.|||| ||||.||.|
BL00349___ara 620 GCTTGCTTGCCGGCGAGCCGTATTGTCCGGCCGCCAGCCG---------- 659
BSNT_04198___ 657 CGTTCA----GGAGGCGCTTGCTGCCTGCATTGAACACACAGAAGACATT 702
|.||| |||.|||||||.|...||..||||.|..|.|||.|||||.
BL00349___ara 660 -GCTCACGAGGGAAGCGCTTGATCAATGTCTTGACCGAAAAGATGACATC 708
BSNT_04198___ 703 GC------GATGAAAACGGAAACAGGCATACGGGTT-------TTGATGG 739
|| |||| ||| .|.|||.| |||||||
BL00349___ara 709 GCCGCCAAGATG----CGG---------GATGGGATTGAGAAATTGATGG 745
BSNT_04198___ 740 AGTCTTTACTTGTATCTGGGCTTGTCATGCTGGCATTAGATCATTCCCGC 789
|.||..|..|..|.|||||.||.||||||||||...|.||.|||||..|.
BL00349___ara 746 AATCGCTGATCCTTTCTGGCCTAGTCATGCTGGTTCTCGACCATTCAAGG 795
BSNT_04198___ 790 CCGGCATCAGGCGGAGAGCATCATATATCACATTGGATTGAGATGGAATT 839
|||||.||.|||||.|||||.|||.|.||.||.|...||||.|||.||..
BL00349___ara 796 CCGGCTTCCGGCGGCGAGCACCATCTTTCCCACTACCTTGAAATGAAAGC 845
BSNT_04198___ 840 AATGGAGAAAAAACGGCCACAGATTCTTCATGGGGCAAAGGTGGGCTGTG 889
..|||||||.||...||..||..|.||.||.||.||.||.||.||| ||
BL00349___ara 846 GCTGGAGAACAATAAGCGGCAAGTGCTCCACGGTGCTAAAGTCGGC--TG 893
BSNT_04198___ 890 CAGCTGTTTTAT--TAACTGACACATACAGAAAGCTCGCTCA-----GGA 932
||||....|||| |.|||||||..|||.|| ||.||.| |.|
BL00349___ara 894 CAGCGCGATTATGCTGACTGACATTTACCGA----TCTCTTATCGGTGCA 939
BSNT_04198___ 933 TGACGGGCTGAACGAATTTTCACCGAGCCGGCGGCAAGCCATCCAATCGG 982
.|.|.||.||| |||.|..||.| .||||||.||.|..||.|
BL00349___ara 940 AGCCTGGGTGA--------TCAACACGCTG--AGCAAGCGATTCGCTCCG 979
BSNT_04198___ 983 CTTATCAAACTCTCCCGGAAGG--AGAAGTGCTGGCTGATTGGCTGAGAT 1030
.||||.|||..|||||.||.|| |||| ..||||.||.|||.||||
BL00349___ara 980 TTTATGAAAAGCTCCCTGACGGTAAGAA--AATGGCAGAGTGGATGAG-- 1025
BSNT_04198___ 1031 CAGC----CGGAGGCCCTGCGTAT--TTTGACGAAATCGGTGTCGGGCAG 1074
|| |||.||.||| |||| ||..|.|||.|||.|||.|...|.
BL00349___ara 1026 --GCGTATCGGCGGGCCT--GTATCATTCAAAGAACTCGATGTTGAAGAA 1071
BSNT_04198___ 1075 GATTCT-GTCA-AGAATGCCTTCAGACACGCGCA-CACCTTAAGAGACCG 1121
|| .|| ||.| |||| ||..||..|.||||.|| ||.| |.||||||||
BL00349___ara 1072 GA-GCTGGTGAGAGAA-GCGCTCGCATACGCCCATCAGC-TCAGAGACCG 1118
BSNT_04198___ 1122 CTGCACCGGATTAAGAATCATTAATGAAAACAAAACG--CTGATCAACCA 1169
.|..||.|||.|.|.||||||.||| |||.||| || |...||.
BL00349___ara 1119 GTATACGGGACTGAAAATCATCAAT-----CAATACGGCCT--TTTGCCG 1161
BSNT_04198___ 1170 TGGTCTATATGAATAG----------------------------- 1185
.||..|.||.|.|.||
BL00349___ara 1162 GGGCTTTTAGGCAAAGGACCAGGCGTGAAAGGGGTTAAAATGTGA 1206
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