Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04194 and BL00345
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_04194___abfA.1.5803.seq
# -bsequence dna-align/BL00345___abfA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04194___abfA-BL00345___abfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04194___abfA-BL00345___abfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04194___abfA
# 2: BL00345___abfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1570
# Identity: 1097/1570 (69.9%)
# Similarity: 1097/1570 (69.9%)
# Gaps: 128/1570 ( 8.2%)
# Score: 3624.5
#
#
#=======================================
BSNT_04194___ 1 ATGA------AAAAAGCGCGAATGATTGTAGACAAAGAATATAAAATCGG 44
|||| |.||||||...||||...|.|||||.|||||||| ||
BL00345___abf 1 ATGACTGTACACAAAGCGAAGATGACGATTGACAAGGAATATAA----GG 46
BSNT_04194___ 45 T----GAAGTAGATAAACGGATTTATGGCTCGTTTATCGAACATATGGGT 90
| ||..|.|||||.||.|||||.|||||.||||||||.|||.|.||.
BL00345___abf 47 TGGCAGAGATTGATAAGCGAATTTACGGCTCCTTTATCGAGCATCTCGGC 96
BSNT_04194___ 91 CGTGCGGTATATGAAGGCATATACGAGCCTGATCACCCTGAAGCGGATGA 140
.|.||.||.|||||||||||.||.|||||||||||.||||||||.||.||
BL00345___abf 97 AGAGCCGTTTATGAAGGCATTTATGAGCCTGATCATCCTGAAGCTGACGA 146
BSNT_04194___ 141 AGATGGATTTAGAAAAGATGTCCAGT-CGCTGATCAAAGAATTACAGGTT 189
|...||.|||.|.|||||||| ||.| ..||..|||.||||.||.||||.
BL00345___abf 147 ATCAGGCTTTCGGAAAGATGT-CATTAAACTAGTCAGAGAACTAAAGGTG 195
BSNT_04194___ 190 CCCATCATCCGCTATCCGGGCGGAAACTTTTTATCCGGATACAACTGGGA 239
||..|.|||.|.|||||.||||||||||||.||||.|||||.||||||||
BL00345___abf 196 CCGTTTATCAGGTATCCCGGCGGAAACTTTGTATCTGGATATAACTGGGA 245
BSNT_04194___ 240 GGACGGTGTCGGACCAGTCGAAAACCGCCCGAGACGGCTTGACTTAGCAT 289
|||.||.||||||||.||||||.|.||.||||.|.|.|||||.||.||.|
BL00345___abf 246 GGATGGAGTCGGACCTGTCGAACAGCGGCCGACAAGACTTGATTTGGCGT 295
BSNT_04194___ 290 GG----CAAACGA-CAGAAACCAATGAAGTGGGAACAAATGAATTTTTAT 334
|| |||.||| |.|||...|| |.||.||.||.||||||.|..
BL00345___abf 296 GGGCGACAACCGAGCCGAACTTAA-----TCGGTACGAACGAATTTATGG 340
BSNT_04194___ 335 CTTGGGCCAAAAAGGT-----GAACACTGAGGTCAATATGGCCGTCAACC 379
.|||||| ||||.| |..|| |||||.||||||||||||||||
BL00345___abf 341 ATTGGGC---AAAGCTTGTCGGGGCA--GAGGTGAATATGGCCGTCAACC 385
BSNT_04194___ 380 TCGGCACAAGAGGCATAGATGCCGCCCGTAATCTCGTTGAATACTGCAAC 429
||||.||.|||||.||.||||||||.||.||.||.||.|||||.||||||
BL00345___abf 386 TCGGAACGAGAGGAATTGATGCCGCACGCAACCTAGTAGAATATTGCAAC 435
BSNT_04194___ 430 CACCCGAAAGGCTCTTACTGGAGTGATTTAAGAAGATCGCATGGCTATGA 479
||.|||..|||.||.||||..||.||.||.||||.|||.||.||.|||.|
BL00345___abf 436 CATCCGTCAGGATCGTACTACAGCGACTTGAGAAAATCCCACGGATATAA 485
BSNT_04194___ 480 ACAGCCGTACGGCATCAAAACATGGTGCTTAGGAAACGAAATGGATGGAC 529
..|.|||.|....||.||||||||||||.|.||.||.||||||||.||.|
BL00345___abf 486 GGAACCGCATAAAATTAAAACATGGTGCCTCGGCAATGAAATGGACGGTC 535
BSNT_04194___ 530 CGTGGCAGATCGGCCACAAAACAGCTGATGAATACGGACGGCTTGCTGCA 579
|.|||||.||||||||.||||||||.|..|||||||||.|.||||||||.
BL00345___abf 536 CATGGCAAATCGGCCATAAAACAGCGGCCGAATACGGAAGACTTGCTGCT 585
BSNT_04194___ 580 GAGACAGCAAAGGTCATGAAGTGGGTTGACCCATCAATTGAACTCGTTGC 629
||..|.||.|||||.|||||.|||...|||||.||.||.||.||.||.||
BL00345___abf 586 GAAGCCGCGAAGGTGATGAAATGGACGGACCCGTCGATCGAGCTTGTCGC 635
BSNT_04194___ 630 CTGCGGCAGCTCAAACAGCGGTATGCCGACCTTTATCGATTGGGAAGCGA 679
||||||.||.||....|||||.||||||||.||.|||||.||||||.|||
BL00345___abf 636 CTGCGGAAGTTCGGGAAGCGGAATGCCGACATTCATCGACTGGGAAACGA 685
BSNT_04194___ 680 AGGTGCTGGAGCATACGTATGAGCATGTCGACTATATCTCTCTTCACACT 729
..|||||.||.||||||||.||.||.|||||.||.|||||.||||||.|.
BL00345___abf 686 CCGTGCTTGACCATACGTACGAACACGTCGAGTACATCTCGCTTCACTCG 735
BSNT_04194___ 730 TACTACGGAAACCGGGATAACAATCTGCCAAACTACTTGGCCCGTTCCAT 779
||.|||||.|||||.||.||..||||.||||||||.|||||..|.||..|
BL00345___abf 736 TATTACGGCAACCGCGACAATGATCTTCCAAACTATTTGGCGAGATCGCT 785
BSNT_04194___ 780 GGATTTGGATCATTTTATCAAA---------TCAGTCGCTGCGACCTGTG 820
.||..|||||||.||||||||| ||||| |||.|
BL00345___abf 786 AGACATGGATCACTTTATCAAAACGGTCATCTCAGT---------CTGCG 826
BSNT_04194___ 821 ACTATGTAAAAGC-AAAAACATGCAGCAAGAAAACAATCAATCTTTC-TC 868
|||||.|.||||| |||||.| ..|||||||||||.||..|.||||| |.
BL00345___abf 827 ACTATATGAAAGCGAAAAAGA-AAAGCAAGAAAACGATTCACCTTTCATA 875
BSNT_04194___ 869 TGGATGAATGGAACGTCTGGTACCACTCAAATGAGGCTGATAAAAAAGTC 918
| |||||.|||||.||||||||.|||||.|||||....||.|||.|||..
BL00345___abf 876 T-GATGAGTGGAATGTCTGGTATCACTCGAATGAAAAAGACAAAGAAGCT 924
BSNT_04194___ 919 GAGCCGTGGATCACTGC----GCGTCCG---ATTTTAGAGGATATTTACA 961
||.|..||| || ||| ||| .||.|.||.||.||.||||
BL00345___abf 925 GAACGCTGG------GCGAAAGCG-CCGCACCTTCTTGAAGACATCTACA 967
BSNT_04194___ 962 ATTTTGAAGATGC-CTTATTAGTCGGCTCTCTGCTCATTACGATGCTGCA 1010
|.|||||.||||| ||| .|.|||||||.|.||||.|||||||||||..|
BL00345___abf 968 ACTTTGAGGATGCGCTT-CTCGTCGGCTGTATGCTGATTACGATGCTCAA 1016
BSNT_04194___ 1011 GCACGCAGACCGTGTGAAAATTGCGTGTCTTGCACAGCTTGTCAATGTCA 1060
|||.||.|||||.||||||||.||.|||||.||.||||||||||||||||
BL00345___abf 1017 GCATGCCGACCGCGTGAAAATCGCCTGTCTGGCTCAGCTTGTCAATGTCA 1066
BSNT_04194___ 1061 TCGCGCCAATCATGACGGAAAAAGGCGGAGAAGCATGGAGACAGCCGATT 1110
|||||||.||.|||||.||.|||||.||||||||||||.|.|||.|.|||
BL00345___abf 1067 TCGCGCCGATTATGACAGACAAAGGGGGAGAAGCATGGCGTCAGACCATT 1116
BSNT_04194___ 1111 TTCTATCCATACATGCATGCTTCTGTTTACGGAAGGGG--CGAGTCACTG 1158
||||||||.|..|||||.|||||.||.|||||.||.|| || || ||||
BL00345___abf 1117 TTCTATCCGTTTATGCACGCTTCCGTCTACGGCAGAGGAACG-GT-ACTG 1164
BSNT_04194___ 1159 -AAACCGC-TTATTTCTTCTCCTAAGTACGATTGTTCTGATTTCACTGAT 1206
|.||.|| .|| ||.|||||.|||||.|||......||.||.||.|||
BL00345___abf 1165 CAGACGGCGGTA--TCGTCTCCAAAGTATGATGCGAAAGACTTTACGGAT 1212
BSNT_04194___ 1207 GTGCCATATGTTGATGCTGCTGT-TGTGTACTCTGAAGAGGAAGAAACAC 1255
|||||.||..|.||..|.| ||| |||.|.|..||||||.|..||...|.
BL00345___abf 1213 GTGCCGTACTTGGAGTCCG-TGTCTGTTTTCAATGAAGAAGCCGAGGAAT 1261
BSNT_04194___ 1256 TCACTATTTTTGCGGTAAACAAGGCTGAGGATCAGA--------TGGAGA 1297
|.||..|||||||.||.|| |.|.|.|.|||| |.||.|
BL00345___abf 1262 TAACCGTTTTTGCCGTCAA-----CCGCGCAACAGACGCCGGCCTTGAAA 1306
BSNT_04194___ 1298 CGGA----GATTTCGCTCAGAGGCTTTGAATCCTACCAAATCGCAGAGCA 1343
.||| ||| .|.|||.||||||||...|||....||.|.|||||
BL00345___abf 1307 TGGAAGCCGAT----ATGAGAAGCTTTGAAGGGTACAGTGTCTCTGAGCA 1352
BSNT_04194___ 1344 CATCGTACTTGAGCATCAGGAT-ATCAAAGCGACAAACCAGCATAACAGA 1392
||||||.||.||.||..|.||| || ||||||||.||..| ||.|||
BL00345___abf 1353 CATCGTTCTGGAACACGAAGATCAT-AAAGCGACGAATGA----AAAAGA 1397
BSNT_04194___ 1393 ----AAAAATGTCGTTCCGCATTCCAACGGA----TCATCGTCTGTCAGC 1434
||.||.|||||||||||...|..|||| .||..||.|||.|..
BL00345___abf 1398 CCGCAACAACGTCGTTCCGCACAGCGGCGGAGACGCCAAAGTATGTGACG 1447
BSNT_04194___ 1435 GAAAATGGCTTAACTGGTCA-TTTCACGCCGCTTTCCTGGAATGTGATCC 1483
|.| ||| |.||.|.||| .||| ||..|||||||||||||||||||.
BL00345___abf 1448 GCA---GGC-TGACGGCTCACCTTC-CGAAGCTTTCCTGGAATGTGATCA 1492
BSNT_04194___ 1484 GCCTGAAAAAACAGTCATAA 1503
|..||||.|||||.|.|
BL00345___abf 1493 GAATGAAGAAACAATGA--- 1509
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