Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04194 and BL00345

See Amino acid alignment / Visit BSNT_04194 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:17
# Commandline: needle
#    -asequence dna-align/BSNT_04194___abfA.1.5803.seq
#    -bsequence dna-align/BL00345___abfA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04194___abfA-BL00345___abfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04194___abfA-BL00345___abfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04194___abfA
# 2: BL00345___abfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1570
# Identity:    1097/1570 (69.9%)
# Similarity:  1097/1570 (69.9%)
# Gaps:         128/1570 ( 8.2%)
# Score: 3624.5
# 
#
#=======================================

BSNT_04194___      1 ATGA------AAAAAGCGCGAATGATTGTAGACAAAGAATATAAAATCGG     44
                     ||||      |.||||||...||||...|.|||||.||||||||    ||
BL00345___abf      1 ATGACTGTACACAAAGCGAAGATGACGATTGACAAGGAATATAA----GG     46

BSNT_04194___     45 T----GAAGTAGATAAACGGATTTATGGCTCGTTTATCGAACATATGGGT     90
                     |    ||..|.|||||.||.|||||.|||||.||||||||.|||.|.||.
BL00345___abf     47 TGGCAGAGATTGATAAGCGAATTTACGGCTCCTTTATCGAGCATCTCGGC     96

BSNT_04194___     91 CGTGCGGTATATGAAGGCATATACGAGCCTGATCACCCTGAAGCGGATGA    140
                     .|.||.||.|||||||||||.||.|||||||||||.||||||||.||.||
BL00345___abf     97 AGAGCCGTTTATGAAGGCATTTATGAGCCTGATCATCCTGAAGCTGACGA    146

BSNT_04194___    141 AGATGGATTTAGAAAAGATGTCCAGT-CGCTGATCAAAGAATTACAGGTT    189
                     |...||.|||.|.|||||||| ||.| ..||..|||.||||.||.||||.
BL00345___abf    147 ATCAGGCTTTCGGAAAGATGT-CATTAAACTAGTCAGAGAACTAAAGGTG    195

BSNT_04194___    190 CCCATCATCCGCTATCCGGGCGGAAACTTTTTATCCGGATACAACTGGGA    239
                     ||..|.|||.|.|||||.||||||||||||.||||.|||||.||||||||
BL00345___abf    196 CCGTTTATCAGGTATCCCGGCGGAAACTTTGTATCTGGATATAACTGGGA    245

BSNT_04194___    240 GGACGGTGTCGGACCAGTCGAAAACCGCCCGAGACGGCTTGACTTAGCAT    289
                     |||.||.||||||||.||||||.|.||.||||.|.|.|||||.||.||.|
BL00345___abf    246 GGATGGAGTCGGACCTGTCGAACAGCGGCCGACAAGACTTGATTTGGCGT    295

BSNT_04194___    290 GG----CAAACGA-CAGAAACCAATGAAGTGGGAACAAATGAATTTTTAT    334
                     ||    |||.||| |.|||...||     |.||.||.||.||||||.|..
BL00345___abf    296 GGGCGACAACCGAGCCGAACTTAA-----TCGGTACGAACGAATTTATGG    340

BSNT_04194___    335 CTTGGGCCAAAAAGGT-----GAACACTGAGGTCAATATGGCCGTCAACC    379
                     .||||||   ||||.|     |..||  |||||.||||||||||||||||
BL00345___abf    341 ATTGGGC---AAAGCTTGTCGGGGCA--GAGGTGAATATGGCCGTCAACC    385

BSNT_04194___    380 TCGGCACAAGAGGCATAGATGCCGCCCGTAATCTCGTTGAATACTGCAAC    429
                     ||||.||.|||||.||.||||||||.||.||.||.||.|||||.||||||
BL00345___abf    386 TCGGAACGAGAGGAATTGATGCCGCACGCAACCTAGTAGAATATTGCAAC    435

BSNT_04194___    430 CACCCGAAAGGCTCTTACTGGAGTGATTTAAGAAGATCGCATGGCTATGA    479
                     ||.|||..|||.||.||||..||.||.||.||||.|||.||.||.|||.|
BL00345___abf    436 CATCCGTCAGGATCGTACTACAGCGACTTGAGAAAATCCCACGGATATAA    485

BSNT_04194___    480 ACAGCCGTACGGCATCAAAACATGGTGCTTAGGAAACGAAATGGATGGAC    529
                     ..|.|||.|....||.||||||||||||.|.||.||.||||||||.||.|
BL00345___abf    486 GGAACCGCATAAAATTAAAACATGGTGCCTCGGCAATGAAATGGACGGTC    535

BSNT_04194___    530 CGTGGCAGATCGGCCACAAAACAGCTGATGAATACGGACGGCTTGCTGCA    579
                     |.|||||.||||||||.||||||||.|..|||||||||.|.||||||||.
BL00345___abf    536 CATGGCAAATCGGCCATAAAACAGCGGCCGAATACGGAAGACTTGCTGCT    585

BSNT_04194___    580 GAGACAGCAAAGGTCATGAAGTGGGTTGACCCATCAATTGAACTCGTTGC    629
                     ||..|.||.|||||.|||||.|||...|||||.||.||.||.||.||.||
BL00345___abf    586 GAAGCCGCGAAGGTGATGAAATGGACGGACCCGTCGATCGAGCTTGTCGC    635

BSNT_04194___    630 CTGCGGCAGCTCAAACAGCGGTATGCCGACCTTTATCGATTGGGAAGCGA    679
                     ||||||.||.||....|||||.||||||||.||.|||||.||||||.|||
BL00345___abf    636 CTGCGGAAGTTCGGGAAGCGGAATGCCGACATTCATCGACTGGGAAACGA    685

BSNT_04194___    680 AGGTGCTGGAGCATACGTATGAGCATGTCGACTATATCTCTCTTCACACT    729
                     ..|||||.||.||||||||.||.||.|||||.||.|||||.||||||.|.
BL00345___abf    686 CCGTGCTTGACCATACGTACGAACACGTCGAGTACATCTCGCTTCACTCG    735

BSNT_04194___    730 TACTACGGAAACCGGGATAACAATCTGCCAAACTACTTGGCCCGTTCCAT    779
                     ||.|||||.|||||.||.||..||||.||||||||.|||||..|.||..|
BL00345___abf    736 TATTACGGCAACCGCGACAATGATCTTCCAAACTATTTGGCGAGATCGCT    785

BSNT_04194___    780 GGATTTGGATCATTTTATCAAA---------TCAGTCGCTGCGACCTGTG    820
                     .||..|||||||.|||||||||         |||||         |||.|
BL00345___abf    786 AGACATGGATCACTTTATCAAAACGGTCATCTCAGT---------CTGCG    826

BSNT_04194___    821 ACTATGTAAAAGC-AAAAACATGCAGCAAGAAAACAATCAATCTTTC-TC    868
                     |||||.|.||||| |||||.| ..|||||||||||.||..|.||||| |.
BL00345___abf    827 ACTATATGAAAGCGAAAAAGA-AAAGCAAGAAAACGATTCACCTTTCATA    875

BSNT_04194___    869 TGGATGAATGGAACGTCTGGTACCACTCAAATGAGGCTGATAAAAAAGTC    918
                     | |||||.|||||.||||||||.|||||.|||||....||.|||.|||..
BL00345___abf    876 T-GATGAGTGGAATGTCTGGTATCACTCGAATGAAAAAGACAAAGAAGCT    924

BSNT_04194___    919 GAGCCGTGGATCACTGC----GCGTCCG---ATTTTAGAGGATATTTACA    961
                     ||.|..|||      ||    ||| |||   .||.|.||.||.||.||||
BL00345___abf    925 GAACGCTGG------GCGAAAGCG-CCGCACCTTCTTGAAGACATCTACA    967

BSNT_04194___    962 ATTTTGAAGATGC-CTTATTAGTCGGCTCTCTGCTCATTACGATGCTGCA   1010
                     |.|||||.||||| ||| .|.|||||||.|.||||.|||||||||||..|
BL00345___abf    968 ACTTTGAGGATGCGCTT-CTCGTCGGCTGTATGCTGATTACGATGCTCAA   1016

BSNT_04194___   1011 GCACGCAGACCGTGTGAAAATTGCGTGTCTTGCACAGCTTGTCAATGTCA   1060
                     |||.||.|||||.||||||||.||.|||||.||.||||||||||||||||
BL00345___abf   1017 GCATGCCGACCGCGTGAAAATCGCCTGTCTGGCTCAGCTTGTCAATGTCA   1066

BSNT_04194___   1061 TCGCGCCAATCATGACGGAAAAAGGCGGAGAAGCATGGAGACAGCCGATT   1110
                     |||||||.||.|||||.||.|||||.||||||||||||.|.|||.|.|||
BL00345___abf   1067 TCGCGCCGATTATGACAGACAAAGGGGGAGAAGCATGGCGTCAGACCATT   1116

BSNT_04194___   1111 TTCTATCCATACATGCATGCTTCTGTTTACGGAAGGGG--CGAGTCACTG   1158
                     ||||||||.|..|||||.|||||.||.|||||.||.||  || || ||||
BL00345___abf   1117 TTCTATCCGTTTATGCACGCTTCCGTCTACGGCAGAGGAACG-GT-ACTG   1164

BSNT_04194___   1159 -AAACCGC-TTATTTCTTCTCCTAAGTACGATTGTTCTGATTTCACTGAT   1206
                      |.||.|| .||  ||.|||||.|||||.|||......||.||.||.|||
BL00345___abf   1165 CAGACGGCGGTA--TCGTCTCCAAAGTATGATGCGAAAGACTTTACGGAT   1212

BSNT_04194___   1207 GTGCCATATGTTGATGCTGCTGT-TGTGTACTCTGAAGAGGAAGAAACAC   1255
                     |||||.||..|.||..|.| ||| |||.|.|..||||||.|..||...|.
BL00345___abf   1213 GTGCCGTACTTGGAGTCCG-TGTCTGTTTTCAATGAAGAAGCCGAGGAAT   1261

BSNT_04194___   1256 TCACTATTTTTGCGGTAAACAAGGCTGAGGATCAGA--------TGGAGA   1297
                     |.||..|||||||.||.||     |.|.|.|.||||        |.||.|
BL00345___abf   1262 TAACCGTTTTTGCCGTCAA-----CCGCGCAACAGACGCCGGCCTTGAAA   1306

BSNT_04194___   1298 CGGA----GATTTCGCTCAGAGGCTTTGAATCCTACCAAATCGCAGAGCA   1343
                     .|||    |||    .|.|||.||||||||...|||....||.|.|||||
BL00345___abf   1307 TGGAAGCCGAT----ATGAGAAGCTTTGAAGGGTACAGTGTCTCTGAGCA   1352

BSNT_04194___   1344 CATCGTACTTGAGCATCAGGAT-ATCAAAGCGACAAACCAGCATAACAGA   1392
                     ||||||.||.||.||..|.||| || ||||||||.||..|    ||.|||
BL00345___abf   1353 CATCGTTCTGGAACACGAAGATCAT-AAAGCGACGAATGA----AAAAGA   1397

BSNT_04194___   1393 ----AAAAATGTCGTTCCGCATTCCAACGGA----TCATCGTCTGTCAGC   1434
                         ||.||.|||||||||||...|..||||    .||..||.|||.|..
BL00345___abf   1398 CCGCAACAACGTCGTTCCGCACAGCGGCGGAGACGCCAAAGTATGTGACG   1447

BSNT_04194___   1435 GAAAATGGCTTAACTGGTCA-TTTCACGCCGCTTTCCTGGAATGTGATCC   1483
                     |.|   ||| |.||.|.||| .||| ||..|||||||||||||||||||.
BL00345___abf   1448 GCA---GGC-TGACGGCTCACCTTC-CGAAGCTTTCCTGGAATGTGATCA   1492

BSNT_04194___   1484 GCCTGAAAAAACAGTCATAA   1503
                     |..||||.|||||.|.|   
BL00345___abf   1493 GAATGAAGAAACAATGA---   1509


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