Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04172 and BL00334
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_04172___yshC.1.5803.seq
# -bsequence dna-align/BL00334___yshC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04172___yshC-BL00334___yshC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04172___yshC-BL00334___yshC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04172___yshC
# 2: BL00334___yshC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1779
# Identity: 1291/1779 (72.6%)
# Similarity: 1291/1779 (72.6%)
# Gaps: 129/1779 ( 7.3%)
# Score: 4565.0
#
#
#=======================================
BSNT_04172___ 1 ATGCATAAAAAAGATATTATCCGGCTGCTTGAAACCATTGCAGTCTATAT 50
|||||||||||||||||.|||....||||||||||.|||||..|.|||||
BL00334___ysh 1 ATGCATAAAAAAGATATCATCAAATTGCTTGAAACGATTGCGATATATAT 50
BSNT_04172___ 51 GGAACTAAAAGGGGACAACCCGTTTAAAGTATCCGCCTTTC-GAAAAGCG 99
||||||||||||||||||||||||||||.|.|||| ||||| ||||.||.
BL00334___ysh 51 GGAACTAAAAGGGGACAACCCGTTTAAAATCTCCG-CTTTCAGAAAGGCT 99
BSNT_04172___ 100 GCGGCAGCCCTGGAACAGGACGACCGAAGCTTATCAGAAATGGACGATAT 149
||||||||.||.|||||.||||||||.|||.|.||.|||||.||.|||||
BL00334___ysh 100 GCGGCAGCTCTTGAACAAGACGACCGGAGCCTCTCGGAAATCGATGATAT 149
BSNT_04172___ 150 GATGTCGCTGTCCGGCATTGGAAAAGGAACGTACAGC-GTCATTAAAGAG 198
||.|||.||||||||.||.||.|||||.||.||| || |||||.||.||.
BL00334___ysh 150 GACGTCCCTGTCCGGGATCGGCAAAGGCACATAC-GCTGTCATCAAGGAA 198
BSNT_04172___ 199 TATATAGATGAAGGAAAGTCAAGCACGCTCGAATCGCTT-CAGAAAGAAG 247
|||||.||....|||...||..|.|||||.||| ||.|| .||.||||.|
BL00334___ysh 199 TATATGGACACGGGAGCATCCGGAACGCTGGAA-CGATTAAAGGAAGAGG 247
BSNT_04172___ 248 TGCCGGAAGGACTCGTGCCTTTATTGAAGCTGCCGGGGCTCGGCGGCAAA 297
|.|||||||||||.||.||..|.||||||||.|||||.||||||||||||
BL00334___ysh 248 TTCCGGAAGGACTTGTCCCGCTTTTGAAGCTTCCGGGTCTCGGCGGCAAA 297
BSNT_04172___ 298 AAAATCGCAAAGCTATATAAAGAGCTCGGCGTACATGATGCAGAATCTCT 347
||||||||.|||||.|||.|.|||||||||||...||||||.|.||||.|
BL00334___ysh 298 AAAATCGCCAAGCTGTATCAGGAGCTCGGCGTCTGTGATGCGGCATCTTT 347
BSNT_04172___ 348 GAAGGAAGCCTGTGAACAGCAAAAGGTACAAGGTCTTGCGGGCTTCGGCA 397
.||.||.|||||.||||||||||||||.||.||.|||||.||.|||||||
BL00334___ysh 348 AAAAGAGGCCTGCGAACAGCAAAAGGTTCAGGGGCTTGCCGGATTCGGCA 397
BSNT_04172___ 398 AAAAATCGGAAGAAAAAATATTACAGGCGCTCGGGGAAGCCGGAAAACAG 447
||||..||||.||||||||..|.|||||..|.||.|||||.|||||||..
BL00334___ysh 398 AAAAGACGGAGGAAAAAATCCTGCAGGCTTTGGGTGAAGCGGGAAAACGC 447
BSNT_04172___ 448 CCTGAACGGTTCCCGATCG-----GCTACGCCCTCCG----GATCGCGCG 488
||||||||||.|||||||| |||..|.||..|| .|||
BL00334___ysh 448 CCTGAACGGTACCCGATCGCGGTCGCTTTGGCCGTCGCTGACATC----- 492
BSNT_04172___ 489 GGAAATTGAGGAGCATCTT-----TCTCAATTTACGCATATCATCAAATT 533
||.||.|||||.||| .||| .||....||||.||.||
BL00334___ysh 493 ----ATCGAAGAGCAGCTTGAAGGGCTC-----CCGGGCCTCATTAAGTT 533
BSNT_04172___ 534 TTCTCGTGCCGGAAGTCTCCGCAGAGCGCG----GGAAACGGTGAAGGAT 579
|||.||.||||||||.||.||| |||| .|||||||||||.||.
BL00334___ysh 534 TTCACGGGCCGGAAGCCTGCGC----CGCGCCAAAGAAACGGTGAAAGAC 579
BSNT_04172___ 580 CTGGATTATATCATTGCT---ACAGATC--------ATCCGGCTGAAGTA 618
||.|||||.||.||.||| ||.|||| .||||| ||||
BL00334___ysh 580 CTCGATTACATTATGGCTGTCACTGATCCGGAACTTGTCCGG--GAAG-- 625
BSNT_04172___ 619 AGAGAGCAGCTTCTT-GAGCTGCCAAACATCAA-AAGCGTGAT---CGCA 663
|..|||| .||||..|.|||||||| .|| ||.|| ||||
BL00334___ysh 626 --------GGCTCTTAAAGCTTTCGAACATCAAGGAG-GTCATTGCCGCA 666
BSNT_04172___ 664 AGCGGAGATACGAAGGTGTCCGTCATCCTTT-CCTTTGAATATGAAACAA 712
|||||||||||.|||||..||| |.||| |.||||||||.||||..|
BL00334___ysh 667 ---GGAGATACGAAAGTGTCTCTCA-CATTTGCGTTTGAATACGAAATCA 712
BSNT_04172___ 713 GCGTCGATTTCCGTCTTGTGACGGAAGAGCAGTTTCCGACAACACTCCAT 762
|.|..||||||||.||.|||||.||.||.|||||.||.||.||.||.|||
BL00334___ysh 713 GTGCGGATTTCCGGCTGGTGACAGAGGAACAGTTCCCAACGACGCTTCAT 762
BSNT_04172___ 763 CATTTTACGGGATCAAAGGATCACAATATTAAAATGCGCCAAATCGCCAA 812
||||||||.||||||||.||.||||||||.|||||||||||..|.|||||
BL00334___ysh 763 CATTTTACCGGATCAAAAGACCACAATATCAAAATGCGCCAGCTTGCCAA 812
BSNT_04172___ 813 AGAACGCGGCGAGCGGATCAGTGAATACGGCGTTGAGACAGTTGAAACCG 862
||||...|||||..|.|||||||||||||||||.||.||.||||||||.|
BL00334___ysh 813 AGAAAAAGGCGAAAGAATCAGTGAATACGGCGTCGAAACCGTTGAAACTG 862
BSNT_04172___ 863 GAGAGATCAAAACATTTC-CGAGTGAACGTGAATTTTATGCGCACTTCGG 911
||||.||.||||| |||| |.||.|||...||.||||..||.||.|||||
BL00334___ysh 863 GAGAAATTAAAAC-TTTCTCAAGCGAAAAAGAGTTTTTCGCCCATTTCGG 911
BSNT_04172___ 912 CCTGCCGCTGATTCCGCCGGAAATTCGTGAAAGCGGACAG-----GAAGT 956
.||.|||.|.||||||||.|||.|.||.|| ||||| |||||
BL00334___ysh 912 GCTTCCGTTTATTCCGCCCGAACTGCGGGA-----GACAGGAAGAGAAGT 956
BSNT_04172___ 957 GGAAACCTACAGCGACAGCATTGAACTGATAGAAC---------CCGGGC 997
.||...|||||||| |||| .||.|.|| |||.|.
BL00334___ysh 957 CGAGGACTACAGCG------TTGA---CATCGGACTCGTTTCCGCCGAGG 997
BSNT_04172___ 998 AAATCAAAGGTGATCTCCACATGCACTCAACGTGGAGCGATGGTGCATTT 1047
|.||..||||.||.||.|||||||||||..|.||||||||.|||||.|||
BL00334___ysh 998 ATATTCAAGGAGACCTTCACATGCACTCGGCTTGGAGCGACGGTGCTTTT 1047
BSNT_04172___ 1048 TCGATCAGAGAGATGGCTGAAGCCTGCATCAAAAAAGGCTATCAATACAT 1097
||||||||.||.|||||.|||||.|||||...||||||.||.|..||.||
BL00334___ysh 1048 TCGATCAGGGAAATGGCGGAAGCATGCATGGCAAAAGGGTACCGCTATAT 1097
BSNT_04172___ 1098 GGCGATCACCGATCATTCACAATATTTAAAGGTCGCCAACGGCCTTACTG 1147
|||||||||.||.|||||.|||||||||||.|||||...|||..|.||..
BL00334___ysh 1098 GGCGATCACAGACCATTCCCAATATTTAAAAGTCGCAGGCGGTTTGACGC 1147
BSNT_04172___ 1148 CAGAAAGACTTAAGCA-GCAGGCAAAAGAAATTGACGCACTGAATGCAGA 1196
|.||..|.||| .||| ||||||.||.||||||||.|.|||||||...||
BL00334___ysh 1148 CTGAGCGCCTT-CGCATGCAGGCGAAGGAAATTGATGAACTGAATAAGGA 1196
BSNT_04172___ 1197 GTTTGAAAAC----TTCCGTATTTTGAAAGGCGTTGAGATGGATATCCTG 1242
.||| || ||.|.||||||.||||||||.||.|||||.||||||
BL00334___ysh 1197 ATTT----ACCGATTTTCATATTTTTAAAGGCGTGGAAATGGACATCCTG 1242
BSNT_04172___ 1243 CCTGACGGTACGCTCGATTATGATGACGATATGCTTGCGGAAATGGATAT 1292
||||||||.||.||.||||||||.|||||..||||.||||||||||||.|
BL00334___ysh 1243 CCTGACGGAACACTGGATTATGACGACGAGCTGCTGGCGGAAATGGATCT 1292
BSNT_04172___ 1293 CGTTATTGCATCGATTCATTCCAG-TTTTAATCAGCCGGAACACGTGATT 1341
.||.|||||.||.||.|||||.|| ||||.| ||||||.|.||.||.||.
BL00334___ysh 1293 TGTCATTGCTTCCATCCATTCAAGCTTTTCA-CAGCCGCAGCATGTCATC 1341
BSNT_04172___ 1342 ATGAAACGGCTTGAGACGGCACTGACAAACAAGCATGTTGACATTATCGC 1391
|||||.||||||||.||.||.|||...||..||||.||||||||||||||
BL00334___ysh 1342 ATGAAGCGGCTTGAAACCGCGCTGCTGAATCAGCACGTTGACATTATCGC 1391
BSNT_04172___ 1392 ACACCCGACCGGGCGCCTTATCGGCAGACGGGCCGGTTACGAAATCGATA 1441
.||.||||||||.||.||.|||||.|||.||||.||.||.|||.||||||
BL00334___ysh 1392 TCATCCGACCGGCCGTCTGATCGGAAGAAGGGCGGGGTATGAAGTCGATA 1441
BSNT_04172___ 1442 TTGATCAGCTGATTGAGCTTGCGAGGAAAACAAATACGGCGCTTGAACTT 1491
||||.||||||||.||.|||||||..|||||.|||||.||..|.||.||.
BL00334___ysh 1442 TTGACCAGCTGATCGAACTTGCGAAAAAAACGAATACAGCATTGGAGCTG 1491
BSNT_04172___ 1492 AACGCCAACCCTGCGCGCCTTGATCTGCGCACAGAGCATTTAATGAAAGC 1541
|||||.||.||.|||||.||.|||||..|.|..|||||.||.||.|||||
BL00334___ysh 1492 AACGCAAATCCAGCGCGGCTCGATCTCAGAATGGAGCACTTGATCAAAGC 1541
BSNT_04172___ 1542 AAACGAACAAGGGGTTACATTGGTGATTAATACTGATGCCCATAATATTG 1591
.||.|.....||.||.|||.|.||.||||||||.||||||||.||.|..|
BL00334___ysh 1542 GAATGCTGCCGGAGTGACACTCGTTATTAATACGGATGCCCACAACACAG 1591
BSNT_04172___ 1592 AGATGTTAGACGATATGAAAACTGGCGTTACTGCCGCGCGCAAAGGATGG 1641
.||||.|.||.|||||||||||.||||||||.||.|||.|.|||||||||
BL00334___ysh 1592 CGATGCTTGATGATATGAAAACGGGCGTTACGGCAGCGAGAAAAGGATGG 1641
BSNT_04172___ 1642 ACGGAAACGAAA----AACGTTCTGAATGCCCGGTCGCTTAAAGACGTAG 1687
||| |.||| ||.||..|.||..||||.||..||.||||.||..
BL00334___ysh 1642 ACG----CCAAAGGCCAATGTATTAAACACCCGCTCCTTTGAAGAAGTCC 1687
BSNT_04172___ 1688 AGGTATTTCTGAAGCG-CAACGA--TTAA 1713
|||.||||.||..||| ||.||| ||||
BL00334___ysh 1688 AGGCATTTTTGTCGCGCCATCGATCTTAA 1716
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