Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04170 and BL00332

See Amino acid alignment / Visit BSNT_04170 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:14
# Commandline: needle
#    -asequence dna-align/BSNT_04170___yshE.1.5803.seq
#    -bsequence dna-align/BL00332___yshE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04170___yshE-BL00332___yshE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04170___yshE-BL00332___yshE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04170___yshE
# 2: BL00332___yshE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity:     319/405 (78.8%)
# Similarity:   319/405 (78.8%)
# Gaps:           0/405 ( 0.0%)
# Score: 1251.0
# 
#
#=======================================

BSNT_04170___      1 ATGAGTGATTTTTGGGAAAACGAGCTTGTGGAAATCGCGGCATATTACAG     50
                     ||||..||.||||||||.|||.|.||||||||||||||.||.||.|||||
BL00332___ysh      1 ATGAAAGAGTTTTGGGAGAACAACCTTGTGGAAATCGCCGCGTACTACAG     50

BSNT_04170___     51 TGTCGCGGTTCTCTGCCTCGTCCTCTTTTTGACTGTGTTTGAGCTGGTGA    100
                     |||..|.|||.|.||.||.||..|.|||||..||||||||||.||.||.|
BL00332___ysh     51 TGTTTCCGTTTTGTGTCTTGTGATATTTTTATCTGTGTTTGAACTCGTCA    100

BSNT_04170___    101 CGGCTTATAAAAACTGGGAAGAGATTCAAAAAGGAAATCTTGCGGTGGCA    150
                     |..|.||||||||.|||||.|||||||||||||||||..|.|||||.||.
BL00332___ysh    101 CCACGTATAAAAATTGGGAGGAGATTCAAAAAGGAAACATGGCGGTTGCG    150

BSNT_04170___    151 ATGGCGACCGGCGGAAAAATTTTGGGAATCGCAAACGTATTTCAGCATTC    200
                     |||||.||.||||||||||||||.||.|||||.|||||..|.||..|.||
BL00332___ysh    151 ATGGCAACAGGCGGAAAAATTTTAGGCATCGCCAACGTGCTGCAAAAATC    200

BSNT_04170___    201 CATCTCCCAGCATAATTCGCTGCTGCAAATGATCGGCTGGGGCGTTTACG    250
                     .|||..||||||||||||.||||||||||||||.||.|||||..|.|.||
BL00332___ysh    201 GATCAGCCAGCATAATTCCCTGCTGCAAATGATGGGGTGGGGGCTGTTCG    250

BSNT_04170___    251 GGTTTGTTATGCTTCTGATCAGCTACTTTATTTTTGAGTTTTTGACTCCG    300
                     |.|||.|..|||||.|||||.|||||||.||||||||.|||.||||.|||
BL00332___ysh    251 GTTTTATCCTGCTTTTGATCGGCTACTTCATTTTTGAATTTCTGACGCCG    300

BSNT_04170___    301 CGGTTTAAAATTGATCAGGAAATCGAAAATGATAACCGGGCTGTCGGCTT    350
                     ||.|||||||||||..||||.||.|||||.||.|||||.||.||||||||
BL00332___ysh    301 CGCTTTAAAATTGACAAGGAGATTGAAAACGACAACCGCGCAGTCGGCTT    350

BSNT_04170___    351 TATTTCATTTGTCATTTCTGTCGGGCTTTCATTTGTGGTGGCAGCCGGAA    400
                     .||||||||.||||||||.||.||.||.||||||||.|||||..|.||.|
BL00332___ysh    351 CATTTCATTCGTCATTTCAGTAGGCCTGTCATTTGTCGTGGCTTCGGGTA    400

BSNT_04170___    401 TATAA    405
                     |.|||
BL00332___ysh    401 TCTAA    405


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