Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04170 and BL00332
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_04170___yshE.1.5803.seq
# -bsequence dna-align/BL00332___yshE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04170___yshE-BL00332___yshE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04170___yshE-BL00332___yshE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04170___yshE
# 2: BL00332___yshE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity: 319/405 (78.8%)
# Similarity: 319/405 (78.8%)
# Gaps: 0/405 ( 0.0%)
# Score: 1251.0
#
#
#=======================================
BSNT_04170___ 1 ATGAGTGATTTTTGGGAAAACGAGCTTGTGGAAATCGCGGCATATTACAG 50
||||..||.||||||||.|||.|.||||||||||||||.||.||.|||||
BL00332___ysh 1 ATGAAAGAGTTTTGGGAGAACAACCTTGTGGAAATCGCCGCGTACTACAG 50
BSNT_04170___ 51 TGTCGCGGTTCTCTGCCTCGTCCTCTTTTTGACTGTGTTTGAGCTGGTGA 100
|||..|.|||.|.||.||.||..|.|||||..||||||||||.||.||.|
BL00332___ysh 51 TGTTTCCGTTTTGTGTCTTGTGATATTTTTATCTGTGTTTGAACTCGTCA 100
BSNT_04170___ 101 CGGCTTATAAAAACTGGGAAGAGATTCAAAAAGGAAATCTTGCGGTGGCA 150
|..|.||||||||.|||||.|||||||||||||||||..|.|||||.||.
BL00332___ysh 101 CCACGTATAAAAATTGGGAGGAGATTCAAAAAGGAAACATGGCGGTTGCG 150
BSNT_04170___ 151 ATGGCGACCGGCGGAAAAATTTTGGGAATCGCAAACGTATTTCAGCATTC 200
|||||.||.||||||||||||||.||.|||||.|||||..|.||..|.||
BL00332___ysh 151 ATGGCAACAGGCGGAAAAATTTTAGGCATCGCCAACGTGCTGCAAAAATC 200
BSNT_04170___ 201 CATCTCCCAGCATAATTCGCTGCTGCAAATGATCGGCTGGGGCGTTTACG 250
.|||..||||||||||||.||||||||||||||.||.|||||..|.|.||
BL00332___ysh 201 GATCAGCCAGCATAATTCCCTGCTGCAAATGATGGGGTGGGGGCTGTTCG 250
BSNT_04170___ 251 GGTTTGTTATGCTTCTGATCAGCTACTTTATTTTTGAGTTTTTGACTCCG 300
|.|||.|..|||||.|||||.|||||||.||||||||.|||.||||.|||
BL00332___ysh 251 GTTTTATCCTGCTTTTGATCGGCTACTTCATTTTTGAATTTCTGACGCCG 300
BSNT_04170___ 301 CGGTTTAAAATTGATCAGGAAATCGAAAATGATAACCGGGCTGTCGGCTT 350
||.|||||||||||..||||.||.|||||.||.|||||.||.||||||||
BL00332___ysh 301 CGCTTTAAAATTGACAAGGAGATTGAAAACGACAACCGCGCAGTCGGCTT 350
BSNT_04170___ 351 TATTTCATTTGTCATTTCTGTCGGGCTTTCATTTGTGGTGGCAGCCGGAA 400
.||||||||.||||||||.||.||.||.||||||||.|||||..|.||.|
BL00332___ysh 351 CATTTCATTCGTCATTTCAGTAGGCCTGTCATTTGTCGTGGCTTCGGGTA 400
BSNT_04170___ 401 TATAA 405
|.|||
BL00332___ysh 401 TCTAA 405
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