Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04148 and BL00320

See Amino acid alignment / Visit BSNT_04148 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_04148___sdhB.1.5803.seq
#    -bsequence dna-align/BL00320___sdhB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04148___sdhB-BL00320___sdhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04148___sdhB-BL00320___sdhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04148___sdhB
# 2: BL00320___sdhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity:     599/776 (77.2%)
# Similarity:   599/776 (77.2%)
# Gaps:          25/776 ( 3.2%)
# Score: 2270.0
# 
#
#=======================================

BSNT_04148___      1 ATGAGTGAACAAAAAACCATACGA-TTTATTATCACACGTCAAGATACAG     49
                     |||||||||.|.||.||.|| |.| |||||.|||||.|||||.||||||.
BL00320___sdh      1 ATGAGTGAAAATAAGACAAT-CAAGTTTATCATCACTCGTCAGGATACAT     49

BSNT_04148___     50 CCGACAGCACGCCTTACGATGAAGAATTTGAGATTCCATACCGCCCGAAT     99
                     |.||....|..||||||.|.|||||.|||||.|||||||||||.||||||
BL00320___sdh     50 CGGATTCTAATCCTTACCAGGAAGAGTTTGAAATTCCATACCGTCCGAAT     99

BSNT_04148___    100 CTGAACGTCATTTCCGCTCTGATGGAAATCCGCCGGAATCCGGTTAATGT    149
                     .|||||||.|||||||||.|||||||||||.|..||||.|||||.|||| 
BL00320___sdh    100 ATGAACGTGATTTCCGCTTTGATGGAAATCAGAAGGAACCCGGTGAATG-    148

BSNT_04148___    150 CAAAGGTGAGAAGACAACCCCTGTC-------ACATGGGATATGAACTGT    192
                     |||||| ||||| |.|||    |||       .|.|||||||||||||||
BL00320___sdh    149 CAAAGG-GAGAA-AAAAC----GTCGCCGATTGCTTGGGATATGAACTGT    192

BSNT_04148___    193 CTTGAGGAAGTATGCGGCGCATGTTCAATGGTCATAAACGGAAAACCCCG    242
                     ||.||||||||.||||||||.||.||.|||||.||.|||||.||.||..|
BL00320___sdh    193 CTCGAGGAAGTGTGCGGCGCTTGCTCCATGGTGATCAACGGCAAGCCGAG    242

BSNT_04148___    243 CCAATCTTGCACGGCGCTTATCGACCAGCTTGAACAGCCGATCCGTTTAA    292
                     .||.||.||.||.|||||.||||||||||||||.|||||||||||..|..
BL00320___sdh    243 ACAGTCCTGTACAGCGCTGATCGACCAGCTTGAGCAGCCGATCCGCCTTG    292

BSNT_04148___    293 AACCAATGAAAACATTCCCAGTCGTTCGTGATTTGCAGGTTGATCGCAGC    342
                     ||||.||||||||||||||.||.||.||.||..|.||.||.|||||.|||
BL00320___sdh    293 AACCGATGAAAACATTCCCGGTTGTCCGCGACCTTCAAGTGGATCGGAGC    342

BSNT_04148___    343 AGAATGTTTGATTCATTGAAAAAAGTAAAAGCATGGATACCGATTGACGG    392
                     .|.|||||||||||.||.||.|||||.|||||||||.|.|||||.|||||
BL00320___sdh    343 CGCATGTTTGATTCGTTAAAGAAAGTCAAAGCATGGGTGCCGATCGACGG    392

BSNT_04148___    393 TACGTACGATTTAGGACCGGGGCCGAGAATGCCGGAAAAACGCCGTCAAT    442
                     .||.||.|||.|.||||||||.|||||||||||.||||.|.|.|||||.|
BL00320___sdh    393 CACATATGATCTCGGACCGGGACCGAGAATGCCTGAAAGAAGACGTCAGT    442

BSNT_04148___    443 GGGCATATGAATTATCAAAATGCATGACATGCGGCGTCTGCCTCGAAGCT    492
                     ||||.|||||..|.||||||||||||||.||||||||.||.||.||||||
BL00320___sdh    443 GGGCTTATGAGCTGTCAAAATGCATGACTTGCGGCGTGTGTCTTGAAGCT    492

BSNT_04148___    493 TGCCCGAATGTGAACAGCAAATCGAAGTTCATGGGGCCTGCACCGATGTC    542
                     ||.|||||.||||||...|||.|.||.||.|||||.|||||||||.|.||
BL00320___sdh    493 TGTCCGAACGTGAACGATAAAACAAACTTTATGGGACCTGCACCGCTCTC    542

BSNT_04148___    543 GCAAGTCCGCCTGTTTAACGCGCATCCGACAGGCGCCATGAATAAATCTG    592
                     ||||||.|||.|.||.|||.|.||||||||.||.||.|||||.|||||||
BL00320___sdh    543 GCAAGTTCGCTTATTCAACACCCATCCGACGGGAGCGATGAACAAATCTG    592

BSNT_04148___    593 AACGATTAGAAGC-ATTAATGGATGAAGGCGGCCTTGCAGATTGCGGCAA    641
                     ||||..|.||||| ||| ||||..||.|||||.||.||.||.||||||||
BL00320___sdh    593 AACGGCTTGAAGCGATT-ATGGGAGACGGCGGACTGGCCGAATGCGGCAA    641

BSNT_04148___    642 CTCGCAAAACTGTGTTCAATCCTGTCCGAAGGGGATTCCGCTTACCACTT    691
                     ||||||||||||.||.||.||.||||||||.||.||.|||||.||.||.|
BL00320___sdh    642 CTCGCAAAACTGCGTGCAGTCGTGTCCGAAAGGCATCCCGCTCACAACCT    691

BSNT_04148___    692 CGATTGCAGCCTTGAATAGAGATACAAACTTACAAGCGTTCCGCAATTTC    741
                     |.||.||.||.||.||.||.|||||.|.|.|.||.|||||....||.|||
BL00320___sdh    692 CAATCGCTGCATTAAACAGGGATACGACCGTTCAGGCGTTTAAAAACTTC    741

BSNT_04148___    742 TTCGGAAGCGACA-----GAGTATAA    762
                     |||||||||||||     ||  ||||
BL00320___sdh    742 TTCGGAAGCGACAACACGGA--ATAA    765


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