Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04146 and BL00319
See
Amino acid alignment /
Visit
BSNT_04146 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_04146___ysmA.1.5803.seq
# -bsequence dna-align/BL00319___ysmA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04146___ysmA-BL00319___ysmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04146___ysmA-BL00319___ysmA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04146___ysmA
# 2: BL00319___ysmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 492
# Identity: 301/492 (61.2%)
# Similarity: 301/492 (61.2%)
# Gaps: 69/492 (14.0%)
# Score: 849.5
#
#
#=======================================
BSNT_04146___ 1 ATGAAGCTTCCCGCTTATATTGATATGCCGTTTCAAGAATGG----AAAA 46
.||||..|.||.|..|||||.||....||||||.|...|||| |
BL00319___ysm 1 TTGAAATTGCCGGGATATATCGAAGAACCGTTTGACACATGGTGTCA--- 47
BSNT_04146___ 47 CATCCTTTTCTTTTTTCAATGAGGTATCCGTAAGATTTTCCGAGACAGAC 96
.||.|||||||||||..||||.||.|||||..|.|||||.||.||.|||
BL00319___ysm 48 -GTCATTTTCTTTTTTTGATGAAGTTTCCGTCCGTTTTTCAGAAACGGAC 96
BSNT_04146___ 97 ATGTTTGGGCATATGAATAATGTAACCCCTTTTATATATTTTGAGGAGGC 146
|||||.||.||||||||.|||||.||.||.|||.|.||.||.||.||.||
BL00319___ysm 97 ATGTTCGGTCATATGAACAATGTCACACCGTTTGTCTACTTCGAAGAAGC 146
BSNT_04146___ 147 GCGGATTTCTTATTTTAAAAAGCTGAATATGATGAGTGA---------AA 187
|.|||||||.|||||.||..|.|||....|.||| || |.
BL00319___ysm 147 GAGGATTTCCTATTTCAAGCACCTGGGCGTCATG---GACCGCCTTTCAG 193
BSNT_04146___ 188 ACAAACAGA------CCATGACAGTCGTGGCAAGCCAGCAATGCGATTAT 231
||....||| ||||..|.||||||||.||||||||||||||.|||
BL00319___ysm 194 ACGGGAAGAGCGCGGCCATTCCCGTCGTGGCGAGCCAGCAATGCGACTAT 243
BSNT_04146___ 232 TTGCGCCAAGTCATGCCTTATGAAGAGTTGCGCATCTATGTGAAAACAAG 281
||.|..||.|||||||.|.|||||...||....|||...||.||||| ||
BL00319___ysm 244 TTTCAGCAGGTCATGCTTCATGAACGTTTAAAAATCGGCGTCAAAAC-AG 292
BSNT_04146___ 282 CA-CAGTCGGCAGTTCATCTCTTACCTTGCACTATCTCGGAG---AGAAC 327
|| |.|||||||...|.||.||.|||.|.||.|| ||.|| |.||.
BL00319___ysm 293 CATCTGTCGGCAACGCCTCGCTCACCCTCCATTA---CGCAGCGAAAAAT 339
BSNT_04146___ 328 CGCGAAGGCGAGCC-CTGCTTCACCGG---GGCAGTCGTGATGGTTCAAG 373
.|.||||||| ||| .|||||.||.|| ||| .||.|||||.|||.
BL00319___ysm 340 GGGGAAGGCG-GCCTTTGCTTTACAGGACTGGC---GGTTATGGTGCAAA 385
BSNT_04146___ 374 TCTCAAAGGAAAGCGGCAAAGCTGTCAGCTGGACGGATGAGGAGAAAGAA 423
|..|.||.||.|..||.|||.|.||.|..|||||.||.||..|.||||.|
BL00319___ysm 386 TTGCGAAAGATACGGGTAAACCCGTGAAATGGACAGACGAACAAAAAGCA 435
BSNT_04146___ 424 ACGCTTCTT--CATACACGATAA------------------- 444
|..||.||| || ||||
BL00319___ysm 436 AAACTGCTTGGCA------ATAACTCATTTCCTGAGAAATAA 471
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.