Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04146 and BL00319

See Amino acid alignment / Visit BSNT_04146 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_04146___ysmA.1.5803.seq
#    -bsequence dna-align/BL00319___ysmA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04146___ysmA-BL00319___ysmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04146___ysmA-BL00319___ysmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04146___ysmA
# 2: BL00319___ysmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 492
# Identity:     301/492 (61.2%)
# Similarity:   301/492 (61.2%)
# Gaps:          69/492 (14.0%)
# Score: 849.5
# 
#
#=======================================

BSNT_04146___      1 ATGAAGCTTCCCGCTTATATTGATATGCCGTTTCAAGAATGG----AAAA     46
                     .||||..|.||.|..|||||.||....||||||.|...||||    |   
BL00319___ysm      1 TTGAAATTGCCGGGATATATCGAAGAACCGTTTGACACATGGTGTCA---     47

BSNT_04146___     47 CATCCTTTTCTTTTTTCAATGAGGTATCCGTAAGATTTTCCGAGACAGAC     96
                      .||.|||||||||||..||||.||.|||||..|.|||||.||.||.|||
BL00319___ysm     48 -GTCATTTTCTTTTTTTGATGAAGTTTCCGTCCGTTTTTCAGAAACGGAC     96

BSNT_04146___     97 ATGTTTGGGCATATGAATAATGTAACCCCTTTTATATATTTTGAGGAGGC    146
                     |||||.||.||||||||.|||||.||.||.|||.|.||.||.||.||.||
BL00319___ysm     97 ATGTTCGGTCATATGAACAATGTCACACCGTTTGTCTACTTCGAAGAAGC    146

BSNT_04146___    147 GCGGATTTCTTATTTTAAAAAGCTGAATATGATGAGTGA---------AA    187
                     |.|||||||.|||||.||..|.|||....|.|||   ||         |.
BL00319___ysm    147 GAGGATTTCCTATTTCAAGCACCTGGGCGTCATG---GACCGCCTTTCAG    193

BSNT_04146___    188 ACAAACAGA------CCATGACAGTCGTGGCAAGCCAGCAATGCGATTAT    231
                     ||....|||      ||||..|.||||||||.||||||||||||||.|||
BL00319___ysm    194 ACGGGAAGAGCGCGGCCATTCCCGTCGTGGCGAGCCAGCAATGCGACTAT    243

BSNT_04146___    232 TTGCGCCAAGTCATGCCTTATGAAGAGTTGCGCATCTATGTGAAAACAAG    281
                     ||.|..||.|||||||.|.|||||...||....|||...||.||||| ||
BL00319___ysm    244 TTTCAGCAGGTCATGCTTCATGAACGTTTAAAAATCGGCGTCAAAAC-AG    292

BSNT_04146___    282 CA-CAGTCGGCAGTTCATCTCTTACCTTGCACTATCTCGGAG---AGAAC    327
                     || |.|||||||...|.||.||.|||.|.||.||   ||.||   |.||.
BL00319___ysm    293 CATCTGTCGGCAACGCCTCGCTCACCCTCCATTA---CGCAGCGAAAAAT    339

BSNT_04146___    328 CGCGAAGGCGAGCC-CTGCTTCACCGG---GGCAGTCGTGATGGTTCAAG    373
                     .|.||||||| ||| .|||||.||.||   |||   .||.|||||.|||.
BL00319___ysm    340 GGGGAAGGCG-GCCTTTGCTTTACAGGACTGGC---GGTTATGGTGCAAA    385

BSNT_04146___    374 TCTCAAAGGAAAGCGGCAAAGCTGTCAGCTGGACGGATGAGGAGAAAGAA    423
                     |..|.||.||.|..||.|||.|.||.|..|||||.||.||..|.||||.|
BL00319___ysm    386 TTGCGAAAGATACGGGTAAACCCGTGAAATGGACAGACGAACAAAAAGCA    435

BSNT_04146___    424 ACGCTTCTT--CATACACGATAA-------------------    444
                     |..||.|||  ||      ||||                   
BL00319___ysm    436 AAACTGCTTGGCA------ATAACTCATTTCCTGAGAAATAA    471


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