Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04142 and BL00315

See Amino acid alignment / Visit BSNT_04142 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_04142___racE.1.5803.seq
#    -bsequence dna-align/BL00315___racE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04142___racE-BL00315___racE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04142___racE-BL00315___racE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04142___racE
# 2: BL00315___racE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 842
# Identity:     612/842 (72.7%)
# Similarity:   612/842 (72.7%)
# Gaps:          52/842 ( 6.2%)
# Score: 2161.5
# 
#
#=======================================

BSNT_04142___      1 TTGGAACAACCAATAGGAGTCATTGATTCCGGGGTTGGCGGTTTAACCGT     50
                     |||||.|||||.|||||||||||||||||.||.||.||||||||||||||
BL00315___rac      1 TTGGATCAACCGATAGGAGTCATTGATTCGGGAGTCGGCGGTTTAACCGT     50

BSNT_04142___     51 TGCGAAGGAAATCATGAGACAGCTACCTAAAGAAAATATTATCTACGTCG    100
                     |||.||.|||||||||||.|||||.||.||||||||.|||||.||..|.|
BL00315___rac     51 TGCAAAAGAAATCATGAGGCAGCTGCCGAAAGAAAAAATTATATATCTTG    100

BSNT_04142___    101 GGGATACGAAACGGTGTCCTTATGGACCG-CGCCCTGAAGAAGAGGTGCT    149
                     |.||.||||||.|||||||.||.|||||| .|..|.||| ||||.||.||
BL00315___rac    101 GAGACACGAAAAGGTGTCCATACGGACCGAGGGACAGAA-AAGAAGTCCT    149

BSNT_04142___    150 -TCAATATACGTGGGAGCTGACGAATTAT---TTA-CTCGAAAACCACCA    194
                      || ||||||.|||||..||||.||||||   ||| |.||    ||||||
BL00315___rac    150 GTC-ATATACATGGGAAATGACAAATTATCTGTTATCCCG----CCACCA    194

BSNT_04142___    195 CATCAAAATGCTCGTGATCGCCTGTAATACAGCAACAGCGATCGCTTTGG    244
                     .||.||||||||||||||||||||.|||||||||||.||.|||||..|.|
BL00315___rac    195 TATTAAAATGCTCGTGATCGCCTGCAATACAGCAACGGCCATCGCGCTAG    244

BSNT_04142___    245 ATGACATC--CAGCGCAGCGTCGGCATACCGGTGGTCGGAGTCATCCAGC    292
                     |.||.|||  |||.|.|  ||.|..|||||.||..||||.||..|.||||
BL00315___rac    245 AGGAAATCAGCAGGGAA--GTTGCGATACCCGTCATCGGCGTGGTGCAGC    292

BSNT_04142___    293 CTGGTGCGAGAGCAGCGATAAAAGTGACGGATAATCAGCATATCGGTGTC    342
                     |.||.||.|||.|.|||||.|||||||||||.||.||||..|||||.||.
BL00315___rac    293 CCGGAGCCAGAACCGCGATTAAAGTGACGGAAAACCAGCGAATCGGCGTA    342

BSNT_04142___    343 ATCGGCACAGAGAATACGATTAAGAGCAATGCATACGAAGAAGCGCT--T    390
                     |||||.||.||.||.|||||.||.|||...|||||||||||||||||  |
BL00315___rac    343 ATCGGAACGGAAAACACGATCAAAAGCGGCGCATACGAAGAAGCGCTTCT    392

BSNT_04142___    391 TTGGCATTAAACCCTGATTTGAAGGTTGAAAACCTTGCCTGCCCGCTGCT    440
                     ||.||  |.|||...|||||.|.|||.|||||.||.||.|||||..||.|
BL00315___rac    393 TTCGC--TGAACGGAGATTTAACGGTGGAAAATCTGGCTTGCCCAATGTT    440

BSNT_04142___    441 TGTGCCTTTTGTGGAAAGCGGGAAGTTTCTCGACAAAACAGCAGACGAGA    490
                     |||.||.||||||||||||||.||.|||.|.||..|.||.||.||.||.|
BL00315___rac    441 TGTCCCGTTTGTGGAAAGCGGCAAATTTTTGGATGAGACGGCTGATGAAA    490

BSNT_04142___    491 TTGTTAAAACCTCGCTGTATCCGTTAAAAGACACATCAATTGATTCGCTG    540
                     |.||.|..||.||.|||.|.|||.|.|.|||..|||||||.|||.|||||
BL00315___rac    491 TCGTCAGGACGTCACTGCACCCGCTCAGAGATTCATCAATCGATACGCTG    540

BSNT_04142___    541 ATTTTAGGCTGCACCCATTACCCTATTTTAAAAGAAGCC-ATTCAAAGAT    589
                     |||.|.||.||.||.|||||.||.|||||||||| |||| |||||..|.|
BL00315___rac    541 ATTCTCGGATGTACGCATTATCCGATTTTAAAAG-AGCCGATTCAGCGCT    589

BSNT_04142___    590 ATATGGGAGAGCACGTAAACATTATTTCGTCCGGCGATGAAACAGCCCGG    639
                     ||||||||||||.|||.|||||.|||||.|||||.||||||||.|||.||
BL00315___rac    590 ATATGGGAGAGCGCGTCAACATCATTTCCTCCGGAGATGAAACGGCCAGG    639

BSNT_04142___    640 GAAGTCAGCACAATTCTCTCTTATAAAGG-------------GCTGCTGA    676
                     |||||||||||.||..|.||.||.||.||             .|.||.||
BL00315___rac    640 GAAGTCAGCACGATCTTGTCATACAACGGTTTATTAAGCAAAACGGCGGA    689

BSNT_04142___    677 ACCAGTCTCCGATTGCCCCGGATCATCAGTTCCTGACAACAGGGGCGCGT    726
                     ||             |.|||||.||...|||..|.|||||.||||.||||
BL00315___rac    690 AC-------------CGCCGGAACACTTGTTTTTAACAACTGGGGAGCGT    726

BSNT_04142___    727 GATCAGTTTGCAAAAATCGCAGACGATTGGTTTGGCCATGAAGTCGGGCA    776
                     |..|..||..|||||||.|||.|||||||||||||..|.|||||.....|
BL00315___rac    727 GCCCGCTTCACAAAAATTGCAAACGATTGGTTTGGATACGAAGTGAAAAA    776

BSNT_04142___    777 TGTGGAATGTATCTCACTGCAAGA-ACCGAT-TAAAAGATAG    816
                     |||||||.|.||.||.||.||.|| ||||.| |||||.|.  
BL00315___rac    777 TGTGGAAAGCATTTCTCTTCAGGAGACCGCTGTAAAATAA--    816


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04142 and BL00315

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
