Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04141 and BL00314
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_04141___gerM.1.5803.seq
# -bsequence dna-align/BL00314___gerM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04141___gerM-BL00314___gerM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04141___gerM-BL00314___gerM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04141___gerM
# 2: BL00314___gerM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1157
# Identity: 800/1157 (69.1%)
# Similarity: 800/1157 (69.1%)
# Gaps: 103/1157 ( 8.9%)
# Score: 2609.5
#
#
#=======================================
BSNT_04141___ 1 ATGCTGAAAAAAGGA-----------CCTGCAGTCA---TT--GGTGCCA 34
||||||||||||||| | ||.||.| || ||
BL00314___ger 1 ATGCTGAAAAAAGGAATGAAAGGAATC--GCGGTTACGGTTACGG----- 43
BSNT_04141___ 35 CTTGTCTCACCTCTGCCTTGCTTTTATCCGGATGCGGTTTGTTTCAATCT 84
||||.||..|||||.|.|||||.|||||..|.|||||.||.
BL00314___ger 44 ---------CCTCCGCGCTGCTTCTTTCCGGGTGCGGAATATTTCAGTCA 84
BSNT_04141___ 85 GATAAGGCAGCCGAGGAAATTGATCCGCCTCAAGACGTTACATTCGTGAA 134
|||.|.||..|.|||||.||.||||||||.||.|||.|.||||..||.||
BL00314___ger 85 GATCAAGCCTCAGAGGAGATAGATCCGCCGCAGGACATCACATATGTAAA 134
BSNT_04141___ 135 CGATGAAGCGGGTGCCAATTCAAATACA-ACAGCAGCCAAA---AAAACA 180
.|| |.||..||.| |||..|||| ||| ||| .|.||||| ||||||
BL00314___ger 135 AGA-GGAGAAGGAG-CAAGACAAA-ACAGACA-AAACCAAAGATAAAACA 180
BSNT_04141___ 181 GAAAGTGAAAAA---AGCGATACCGCAAAAGCG--GATCAAGCCTCATC- 224
||| ||.||| |||.|.|| .|.||||| |||.|||||.| ||
BL00314___ger 181 GAA---GACAAAGGCAGCAAAAC--GACAAGCGACGATAAAGCCGC-TCA 224
BSNT_04141___ 225 ---------TACTGTTATGAGGGAGCTTTATCTCATTGATAAAAACGGAT 265
|||.||.|||||.||||||||||||||||||||.|||||.|
BL00314___ger 225 AACGGGCGATACGGTCATGAGAGAGCTTTATCTCATTGATAAGAACGGCT 274
BSNT_04141___ 266 ATGTTGTTGCGCAAACGCTGCCTCTCCCTAAAAG--TGAGAGCACGGCTA 313
||||....|||||.||||||||.||.|| |||| .||..|.|||||||
BL00314___ger 275 ATGTGACAGCGCAGACGCTGCCGCTGCC--AAAGCAGGAAGGGACGGCTA 322
BSNT_04141___ 314 AGCAGGCGCTTGAATACCTCGTACAGGGCGGGCCTGTGTCTGAAATTCTT 363
|.||.|||||||||||||||||..|.|||||.|||||.||..|.||.||.
BL00314___ger 323 AACAAGCGCTTGAATACCTCGTTGAAGGCGGCCCTGTTTCAAACATCCTG 372
BSNT_04141___ 364 CCGAATGGCTTCAGAGCTGTATTGCCGGCTGACACCACCGTTAACGTTGA 413
||.||.||.||||||||.||..|||||||.||.||.||.||.||.|||||
BL00314___ger 373 CCAAACGGATTCAGAGCCGTGCTGCCGGCGGATACAACGGTCAATGTTGA 422
BSNT_04141___ 414 CATCAAAAAAGATGGAACCGCGATAGCTGATTTCTCTAATGAGTTCAAAA 463
.||.|||.||||.|||||.|||||.|||||||||||.|||||.||.||||
BL00314___ger 423 TATTAAAGAAGACGGAACAGCGATCGCTGATTTCTCAAATGAATTTAAAA 472
BSNT_04141___ 464 ATTATAA----GAAAGAGGACGAACAGAAAATCGTTCAATCTGTGACGTG 509
|.||||| ||| ||.||.||.||||||||.||..|..|.||.||
BL00314___ger 473 ACTATAAAGCTGAA----GATGAGCAAAAAATCGTACAGGCGATTACATG 518
BSNT_04141___ 510 GACGCTGACGCAATTTAGTTCGATAGATAAAGTGAAGCTGAGAATAAACG 559
||||.|.|||||.||||..|||||.||||||||||||||..|.||.||||
BL00314___ger 519 GACGTTAACGCAGTTTAACTCGATTGATAAAGTGAAGCTCCGCATGAACG 568
BSNT_04141___ 560 GGCATGAACTGAAGGAGATGCCTGTAGGAGGGACGCCGATCTCAGATGAT 609
|.|||||..||||.||.||||||||....||.||||||||.|||||.||.
BL00314___ger 569 GCCATGATTTGAAAGAAATGCCTGTTAACGGCACGCCGATTTCAGAAGAA 618
BSNT_04141___ 610 TTAAGCCGCAAAGACGGCATTAATTTGGAAACAGCCGGTGTAAATGATCT 659
.|.||||||.|.|||||||||||..|.||.||.||.|||||.|..|||.|
BL00314___ger 619 CTCAGCCGCGAGGACGGCATTAACCTCGACACGGCGGGTGTGACAGATAT 668
BSNT_04141___ 660 CACTGCTACCCATCCGCTGACAGTCTACTACTTGGCGGA---AAACGAAG 706
.||.||.||.||.|||.|.||.|||||.||.|||||.|| |.|..|||
BL00314___ger 669 AACGGCGACACAGCCGGTCACCGTCTATTATTTGGCTGAATCAGATAAAG 718
BSNT_04141___ 707 ACAGTGAATACTACGTGCCGGTGACGAAACGAA--TCGACAATTCGGAAA 754
.|| .|||.|||||.||||||||.||.||.| ||..||| ..||||
BL00314___ger 719 GCA---CATATTACGTTCCGGTGACAAAGCGGACGTCTGCAA--AAGAAA 763
BSNT_04141___ 755 AAGACGACATCACAGCAGCCATTAATGAATTGGCTAAAGGCC----CAAG 800
||||..|..|.||.||.||.|||||.||..||.||.||||.| |||.
BL00314___ger 764 AAGATCAGGTGACGGCGGCGATTAAAGAGCTGACTGAAGGACCGGACAAT 813
BSNT_04141___ 801 CAAGGTGAGCGGGCTGTTAACAGACTT-CAGTGAAGATGTAAAGCTGGTC 849
.|| |||||.|||.|..|.||.|| ||| |..||.||.|||||.|..
BL00314___ger 814 AAA----AGCGGCCTGCTCTCCGATTTCCAG-GGCGACGTCAAGCTTGAA 858
BSNT_04141___ 850 AGCAAACCGAAAATCAAAGACGGGCGCGTGACGTTGGATTTCAATCAATC 899
|.|||.|||||.||..|||||||.|..||.||..|.||.||.||..||.|
BL00314___ger 859 AACAAGCCGAAGATTGAAGACGGCCATGTAACCCTCGACTTTAACGAAGC 908
BSNT_04141___ 900 TATATTCGGCAGCGCCGATG---AGAAGACGAAAA-TGATTTCTTCAGAA 945
.||.|.|||.||.|||||.| |||| |||| ||||.||....|||
BL00314___ger 909 GATCTACGGAAGTGCCGACGGCCAGAA----AAAAGTGATATCGGATGAA 954
BSNT_04141___ 946 GTGCTGAACAGCATTGTGCTGACGTTAACGGAGCAGCCGGATGTAAAAAG 995
|||.|.|||||.||.|||.||||.|||||.||.|.|||.|||||.|||||
BL00314___ger 955 GTGTTAAACAGTATCGTGTTGACATTAACCGAACTGCCTGATGTGAAAAG 1004
BSNT_04141___ 996 CGTCTCTGTTAAAGTGAACGGAAAATCAGAGCTTGTAAATGAAAAAGGCG 1045
.||.||.||||..||||||||||||||.|||||.||.|||||||||||.|
BL00314___ger 1005 TGTGTCGGTTACCGTGAACGGAAAATCCGAGCTCGTGAATGAAAAAGGAG 1054
BSNT_04141___ 1046 AAAAGCTCACAGAACCGGTCTCCAGACCTTCTCAA-GTGAATACGGGTAG 1094
|||||||..|..|.|||||.||.||||| ...||| |||||.||.|||||
BL00314___ger 1055 AAAAGCTTTCCAAGCCGGTTTCAAGACC-GAGCAAGGTGAACACAGGTAG 1103
BSNT_04141___ 1095 TTTTTAA 1101
|||||||
BL00314___ger 1104 TTTTTAA 1110
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