Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04140 and BL00312
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_04140___rph.1.5803.seq
# -bsequence dna-align/BL00312___rph.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04140___rph-BL00312___rph.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04140___rph-BL00312___rph.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04140___rph
# 2: BL00312___rph
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 758
# Identity: 561/758 (74.0%)
# Similarity: 561/758 (74.0%)
# Gaps: 37/758 ( 4.9%)
# Score: 2013.5
#
#
#=======================================
BSNT_04140___ 1 ATGAGACATGACGGAAGACAACACGATGAGCTGCGTCCAATCACATTCGA 50
||||||.|.||.||||||.||.||.||||.|||||.||..|||||.|.||
BL00312___rph 1 ATGAGATACGATGGAAGAAAAAACAATGAACTGCGCCCTGTCACAATGGA 50
BSNT_04140___ 51 TTTGGATTTTATCAGCCATCCGGAAGGTTCTGTTCTAATAACA----GCA 96
..|.||.|||||.|..|||||||||||.||.||.||.||.||| ||.
BL00312___rph 51 CCTCGACTTTATTACGCATCCGGAAGGATCGGTCCTGATTACAGTCGGCG 100
BSNT_04140___ 97 GGGAATACAAAGGTAATCTGCAACGCGTCTGTTGAGGATCGCGTACCGCC 146
|| ||||||||.||.||||||||||||||.||.||.|||||||||||
BL00312___rph 101 GG----ACAAAGGTGATATGCAACGCGTCTGTGGAAGACCGCGTACCGCC 146
BSNT_04140___ 147 GTTTTTGCGGGGCGGAGGGAAAGGCTGGATTACAGCAGAGTACAGCATGC 196
.||||||.|.||.|.||||||.||||||||.||.||.||.||||||||||
BL00312___rph 147 CTTTTTGAGAGGAGAAGGGAAGGGCTGGATCACCGCGGAATACAGCATGC 196
BSNT_04140___ 197 TGCCGCGGGCAACAAACCAAAGAACAATCAGAGAATCTTCTAAGGGGAAA 246
||||||||||.||.||||||||.||.|||||.|||||.||.||.||||||
BL00312___rph 197 TGCCGCGGGCCACGAACCAAAGGACGATCAGGGAATCGTCAAAAGGGAAA 246
BSNT_04140___ 247 ATTTCCGGCAGAACAATGGAGATCCAACGCCTGATCGGCCGCGCGCTTCG 296
||.|||||..|.||.|||||.||||||||.||||||||.||.||.|||||
BL00312___rph 247 ATCTCCGGGCGGACGATGGAAATCCAACGGCTGATCGGACGAGCTCTTCG 296
BSNT_04140___ 297 AGCTGTTGTAGATCTGGAAAAGCTCGGTGAACGGACGATTTGGATTGACT 346
.||.|||||.|||.||||||||||||||||.||||||||.|||||.||||
BL00312___rph 297 GGCGGTTGTTGATTTGGAAAAGCTCGGTGAGCGGACGATCTGGATCGACT 346
BSNT_04140___ 347 GTGATGTCATTCAAGCTGATGGAGGAACTAGAACAGCTTCCATTACAGGC 396
|.||.||||||||.||.||.|||||.||.|||||.||.||.|||||.||.
BL00312___rph 347 GCGACGTCATTCAGGCGGACGGAGGTACGAGAACTGCGTCGATTACCGGA 396
BSNT_04140___ 397 GCATTTCTTGCTATGGCGATTGCGATTGGCAAG-CTGATCAAAGCAGGAA 445
|||||....||.||||||.||||..|.|| ||| ||..||.||..|||..
BL00312___rph 397 GCATTCACCGCCATGGCGCTTGCCGTCGG-AAGACTCGTCGAAAAAGGCG 445
BSNT_04140___ 446 CAATCAA-GACAAGTCCGATCACTGATTTTCTTGCTGCGATCTCTGTTGG 494
|..|.|| ||.|.| ||||||||.||.|||.|.|||||.|..||.||.||
BL00312___rph 446 CGCTGAAGGAGATG-CCGATCACCGACTTTTTGGCTGCCACTTCAGTGGG 494
BSNT_04140___ 495 AATTGATAAGGAACAGGGAATTTTG----TTAGATTTAAATTATGAAGAA 540
.||.|||||||||.|.||| ||| || |||||.||.||..|.|||
BL00312___rph 495 CATCGATAAGGAAAAAGGA---TTGATCCTT-GATTTGAACTACCAGGAA 540
BSNT_04140___ 541 GATTCCTCCGCTGAAGTTGACATGAATGTCATCATGACAGGCAGCGGCCG 590
|||||..|.|||||.|||||.|||||.|||.|||||||||||...|||||
BL00312___rph 541 GATTCTGCAGCTGAGGTTGATATGAACGTCGTCATGACAGGCGAAGGCCG 590
BSNT_04140___ 591 TTTTGTGGAACTGCAGGGAACCGGGGAAGAGGCGACTTTTTCAAGAGAG- 639
.|||||.|||||.||||||||.||.||.||.|||||.||.|||||| ||
BL00312___rph 591 CTTTGTCGAACTTCAGGGAACAGGAGAGGAAGCGACATTCTCAAGA-AGT 639
BSNT_04140___ 640 GATCTGAACGGTCTTCTGGGTCTTGCGGAAAAAGGAATTCAAGAGCTGAT 689
||.|||.||||.|||.|.|..||.||.||||||||.||....||.||..|
BL00312___rph 640 GAACTGGACGGGCTTTTAGAGCTGGCTGAAAAAGGGATCGCCGAACTCCT 689
BSNT_04140___ 690 TGACAAGCAAAAAGAAGTGCTGGGTG-------ATTCTCTGCCAGAACTG 732
.||.|||||.|||||||||||.||.| |||.||| |.|.
BL00312___rph 690 CGAAAAGCAGAAAGAAGTGCTCGGCGACGTTGCATTATCT------ATTC 733
BSNT_04140___ 733 A--AATAA 738
| |||||
BL00312___rph 734 AACAATAA 741
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