Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04138 and BL00311

See Amino acid alignment / Visit BSNT_04138 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_04138___ysnA.1.5803.seq
#    -bsequence dna-align/BL00311___ysnA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04138___ysnA-BL00311___ysnA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04138___ysnA-BL00311___ysnA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04138___ysnA
# 2: BL00311___ysnA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity:     445/602 (73.9%)
# Similarity:   445/602 (73.9%)
# Gaps:          25/602 ( 4.2%)
# Score: 1561.0
# 
#
#=======================================

BSNT_04138___      1 ATGAAAGAAGCAATTATTGCGACACATAATCCG--GGAAAAGTGAAGGAA     48
                     |||||.||||..||.|||||  |||..||..||  ||.|||||.|.||||
BL00311___ysn      1 ATGAAGGAAGTCATCATTGC--CACGAAAAACGAAGGGAAAGTCAGGGAA     48

BSNT_04138___     49 TTCAAAGAAATTCTTGAGCCAAGAGGCTATGATGTCAAATCTTTAGCT-G     97
                     |||||||..||.|||||.||.||.|||||.||||||||||||||| || |
BL00311___ysn     49 TTCAAAGCGATGCTTGAACCGAGGGGCTACGATGTCAAATCTTTA-CTGG     97

BSNT_04138___     98 AAATTGGATTTACAGAAGAAATTGAAGAAACAGGCCATACATTTGAAGAA    147
                     |.||.||.|.||||...|||||.||||||||.||.||.||.|||||||||
BL00311___ysn     98 ACATCGGCTATACACCCGAAATCGAAGAAACCGGGCAGACTTTTGAAGAA    147

BSNT_04138___    148 AATGCCATTCTGAAAGCGGAAGCTGTTGCCAAAGCAGTAAAC----AAAA    193
                     ||.||..|..|.|||||||||.|..||.|.||||    ||||    ||||
BL00311___ysn    148 AACGCTGTGATTAAAGCGGAAACAATTTCGAAAG----AAACCGGAAAAA    193

BSNT_04138___    194 TGGTGATTGCGGACGACTCCGGTCTATCCATCGATAATCTTGGCGGCAGA    243
                     |.||||||||.|||||||||||.||.||..||||..||||.||||||||.
BL00311___ysn    194 TCGTGATTGCCGACGACTCCGGCCTGTCTGTCGACTATCTCGGCGGCAGC    243

BSNT_04138___    244 CCCGGGGTTTATTCAGCCCGCTATGCAGGGGAACAGAAAGACGACCAGGC    293
                     |||||.||.||.||.||||||||||||||.|||.|||||.||||.|..||
BL00311___ysn    244 CCCGGCGTATACTCGGCCCGCTATGCAGGAGAAGAGAAAAACGATCTCGC    293

BSNT_04138___    294 AAATATCGAAAAAG-TGCTCAGCGAGCTGAAAGGTATCGAAAAAGAACAG    342
                     .|||.| ||||||| |..|.|..|||||..||||..|.|||||||||.|.
BL00311___ysn    294 CAATCT-GAAAAAGCTATTGAAAGAGCTCGAAGGGGTGGAAAAAGAAGAC    342

BSNT_04138___    343 CGCACCGCCCGTTTCCGCTGCGCACTGGCCGTGAGTATTCCCGGTGAGGA    392
                     ||..||||..|.|||.|.|||||.||.||..|..|.||||||||..||||
BL00311___ysn    343 CGTTCCGCGAGGTTCAGATGCGCGCTCGCAATATGCATTCCCGGACAGGA    392

BSNT_04138___    393 AACAAAAACAGTCGAAGGCCATGTTGAAGGGTATATTGCCGAAGAACCGA    442
                     |||.|||||.||||||||...|||.||||||||.|||.|||||||.|||.
BL00311___ysn    393 AACGAAAACGGTCGAAGGTTCTGTGGAAGGGTACATTACCGAAGAGCCGC    442

BSNT_04138___    443 GAGG-AGAATATGGCTTTGGCTATGACCCAATCTTTATCGTGAAAGATAA    491
                     |.|| |.|| |.|||||.|||||.|||||..|.|||.||||.|||||.||
BL00311___ysn    443 GCGGCACAA-ACGGCTTCGGCTACGACCCGGTTTTTCTCGTCAAAGACAA    491

BSNT_04138___    492 AGATAAGACAATGGCTGAACTGACAAGTGATGAAAAAAATAAAATCAGCC    541
                     ||||.|.||.|||||.||.||..||||.|..|||||.||.||||||||||
BL00311___ysn    492 AGATCAAACGATGGCCGAGCTCTCAAGCGGCGAAAAGAACAAAATCAGCC    541

BSNT_04138___    542 ATAGGGCTGACGCGCTTAAAAAGCTGTCTAAGCTT--TTGG---AGGCAT    586
                     |.||.||.||.|||||.|||||||||||  .||||  ||||   |.||.|
BL00311___ysn    542 ACAGAGCGGAAGCGCTGAAAAAGCTGTC--CGCTTTATTGGATCAAGCGT    589

BSNT_04138___    587 AA    588
                     ||
BL00311___ysn    590 AA    591


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