Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04208 and BL00310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_04208___ysdB.1.5803.seq
# -bsequence dna-align/BL00310___ysdB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04208___ysdB-BL00310___ysdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04208___ysdB-BL00310___ysdB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04208___ysdB
# 2: BL00310___ysdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 422
# Identity: 282/422 (66.8%)
# Similarity: 282/422 (66.8%)
# Gaps: 49/422 (11.6%)
# Score: 888.5
#
#
#=======================================
BSNT_04208___ 1 ATGTTTGTCATGGTTCTAAGGATTATTTTGCTTGCACTTTTTGCTTATTG 50
|||.|||||||..|..|.||..|...||||||.||.|||||.|
BL00310___ysd 1 ATGATTGTCATCATATTGAGACTGGCTTTGCTGGCGCTTTTGG------- 43
BSNT_04208___ 51 TATTTATGCCGTG---------GTCAAATATGTCGCGAATCCTAAGAGAA 91
|.||.|.|||| ||..|||.|.|.|.||..||..|.||||
BL00310___ysd 44 --TCTACGTCGTGTACAGGGCCGTTCAATTTTTGGGGAGCCCGGACAGAA 91
BSNT_04208___ 92 GGCTTAAGCTGGCCCAATCAAAAGAACATTTTTATATTATTGATGAACAA 141
||||.||....||.||..|||||.|.||.||||||.||.|.||.||||||
BL00310___ysd 92 GGCTGAAATCAGCACAGGCAAAAAAGCACTTTTATGTTTTGGACGAACAA 141
BSNT_04208___ 142 AACAATACCCGGAAGAATTTTCAGCTGACGTATAAAGGCGTGCTGTTTGA 191
||.|||||.||.||.|||.|..|||||||.|.||||||||||||.||.||
BL00310___ysd 142 AAGAATACACGCAAAAATCTCAAGCTGACATTTAAAGGCGTGCTTTTCGA 191
BSNT_04208___ 192 GGGAGAAAAGCATATTCCTTCCAAGGATCATCCGCTGTTTATTCACACGA 241
.||||||||.||.||||||||.||.||.|||||||||||.||.||.||||
BL00310___ysd 192 AGGAGAAAAACACATTCCTTCAAAAGACCATCCGCTGTTCATCCATACGA 241
BSNT_04208___ 242 TCTTTGTCTGGACAGAATCTCCT---GAGAAGCTGAAACA----TTTCTC 284
|.|||||.|||||.|||.|.||| ||.||||| || |||..|
BL00310___ysd 242 TTTTTGTATGGACGGAAGCGCCTGAAGAAAAGCT----CAGCTCTTTTAC 287
BSNT_04208___ 285 TGCAAAAGATTTTG-AGAACATTGAAGAAAAAGTACTGGAACGA----TA 329
.|.|.||||.||.| .|||| |||||||||| ||.| ||.|| ||
BL00310___ysd 288 GGAAGAAGACTTCGCGGAAC-TTGAAGAAAA--TATT--AAAGAGCACTA 332
BSNT_04208___ 330 TCCAAATTGTAAGATTGACTGGGA--CCAGC--CCATTAAACTCGCA--- 372
|||..||||.||.||.|||||||| |.|.| ||| |||.|.|.|
BL00310___ysd 333 TCCCGATTGCAAAATCGACTGGGATTCGAACATCCA--AAAGTGGAAAAA 380
BSNT_04208___ 373 -AAAAAAGCAGAAGAGCGTTAA 393
||||||||||||||||..|||
BL00310___ysd 381 CAAAAAAGCAGAAGAGCAATAA 402
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