Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05283 and BL00256
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:23
# Commandline: needle
# -asequence dna-align/BSNT_05283___yvcS.1.5803.seq
# -bsequence dna-align/BL00256.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05283___yvcS-BL00256.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05283___yvcS-BL00256.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05283___yvcS
# 2: BL00256
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2332
# Identity: 1117/2332 (47.9%)
# Similarity: 1117/2332 (47.9%)
# Gaps: 836/2332 (35.8%)
# Score: 1981.0
#
#
#=======================================
BSNT_05283___ 1 ATGAATTTGAGAACTATCGCCCG--------TAAAAA---CATTCTTGGG 39
|| ||.||.|||.|.| |||.|| |||||
BL00256 1 ----AT----GACCTTTCGTCAGTTCGCGTTTAACAATGTCATTC----- 37
BSNT_05283___ 40 AATCTGCAA-------CGGTATGTGGCCTACTTTTTAAGCTGTGTGTTTG 82
|||| |.|||||..||.||.|||.|.|||.|..|||||.
BL00256 38 -----GCAACAAAAGGCTGTATGCCGCTTATTTTCTCAGCAGCATGTTTA 82
BSNT_05283___ 83 CCGTTTCGGTGTTTTTTGTCTTCACATCATTT---ATTTTT------CAT 123
|.||...|||.|||||.| ||||| |||||| ||.
BL00256 83 CGGTGATGGTTTTTTTCG---------CATTTGCGATTTTTGCTTTCCAC 123
BSNT_05283___ 124 CC--TGATG-TCAATGA-----AGACAATATATATGGC----GGAAGCCT 161
|| ||||| .||.||| .||| .|..||| ||.|||
BL00256 124 CCGGTGATGACCAGTGATTCTTTGAC-----TTCCGGCATCGGGCAGC-- 166
BSNT_05283___ 162 TGTCAAAACATGCTTGAGC--GCAGCTCTTGTTGTCATCATTGTGTTTTG 209
|..|||.|||..|| ||.|.|| |..|.|..||||.| |||||
BL00256 167 -----ATGCATCCTTTGGCCTGCTGGTC--GCCGGCGGCATTAT-TTTTG 208
BSNT_05283___ 210 TAT----ATTTTTCATCACATATTC----------CAATTCAGCGTTTTT 245
|.| .||||||.| |.|.| .|.|||| |||.|
BL00256 209 TCTTCTCTTTTTTCTT----TGTGCTGTACTCGATGAGTTCA---TTTCT 251
BSNT_05283___ 246 GCAGGCAAGAAAGAAAGAGTTTGGGCTGCTGACACTGTTT---GGCACAT 292
.||..|.|||||.||.||.||.||..|..| |.||.|| ||.|..|
BL00256 252 TCAATCGAGAAAAAAGGAATTCGGCGTTTT---AATGATTCAAGGGATGT 298
BSNT_05283___ 293 CAAAGCAGCAGCTTCGCAAGATG--ATTT------ATTATGAGCAGTCAC 334
|.|.||..||..||||||.|||| |||| |.|||| |
BL00256 299 CGATGCGCCAAATTCGCATGATGGTATTTCTTGAAAATATG--------C 340
BSNT_05283___ 335 TTATT---TCTCTTGCGGCGATTGCGGCCGGCATTG-GAGCAGGCCTGTT 380
|.||| |.|.|||||.|.|| ||| |||.|||| |..|.|||..||.
BL00256 341 TGATTGGATTTTTTGCGACAAT--CGG-CGGGATTGTGCTCGGGCTCGTC 387
BSNT_05283___ 381 ATTTTCAAA-----ACTGTT------------TTTTATGATTATGACATG 413
.|...|||| ||||.| |.|..|||||||
BL00256 388 TTCGCCAAATTGATACTGCTCACTGCGGAAAATGTCCTGATTAT------ 431
BSNT_05283___ 414 GATGCTCAGCGTGAAGGTGCCGATTTCGT---TTGCCATTG-TGCCGAAA 459
||.|.| .|||.| |||||| | ||.||.||| ||.|||
BL00256 432 --TGATAA----CAAGCT--CGATTT--TTACTTCCCGTTGATGGCGA-- 469
BSNT_05283___ 460 GCGTTTGTGATGACAATTGC------CGG------CTT-------TCTCA 490
.|.||||||.|...|||.| ||| ||| |||..
BL00256 470 -TGATTGTGACGTTTATTTCTTTTAACGGTCTGTTCTTATTTATCTCTTT 518
BSNT_05283___ 491 TCCTGTTTCAGACGCTGCTCATTTTATCACTGGGACGGATTCGGAAGCTG 540
||.|||.|| |....|||||| |||..|| |||||||
BL00256 519 TCTTGTGTC-GTTTGTGCTCA-----------GGAGCGA----GAAGCTG 552
BSNT_05283___ 541 GAAATCATTGAACTGATTAAATCGG----------CCAAA---AAGCCGA 577
||||..||| |||||..|| ||||| .|||||
BL00256 553 ------ATTGTTCTG-TTAAAAGGGAACAAAATCTCCAAAGGGGAGCCG- 594
BSNT_05283___ 578 AAAG--TTTGCCGGTTTATTCGAAATGGCT--CACTGTATTGTCTTTGCT 623
|||| |.|||| |.||| |.||| ||...||||
BL00256 595 AAAGCATCTGCC-------------TTGCTTACGCTG----GTTGCTGCT 627
BSNT_05283___ 624 ATG--TCTTGGCAGTGGTTATTATCTATCTGCAACAGC-CAATGCCATTG 670
.|| .||||.|.|.||.|||| |||.| |..|| ||||
BL00256 628 GTGCTGCTTGCCGGAGGCTATT-----------ACACCGCTTTG--ATTG 664
BSNT_05283___ 671 ACA---------------------TGATGTTTCGGGT-ATTTCCAATTTT 698
.|| .||||.|.|.||| | .
BL00256 665 TCAAAGAAGGAGGCGTTCTTGTGGCGATGGTGCCGGTGA----------C 704
BSNT_05283___ 699 GATTTTAGT-GTTAGTTGGCACGTATTTCTTTTTTACACAAAGCAGTGTG 747
||||.|.|| .||| |.|||||.|||.|..|.|||||.| |||.|.|||
BL00256 705 GATTGTTGTCATTA-TCGGCACATATCTGCTGTTTACGC--AGCTGAGTG 751
BSNT_05283___ 748 GCGTTTT------TCCGCATGCTGTACCGAAA-----GAAACACAGCTTC 786
||| ||||||.||| |.||| |||||.|.|.||
BL00256 752 ----TTTATGTGATCCGCAGGCT----CAAAAAACGGGAAACCCTGTTT- 792
BSNT_05283___ 787 TACAAAGGC-----ACGAATATCATTGTGCGTTCCAACATGAT-----AT 826
.||| ||||||||.|||.||..||| |||| .|
BL00256 793 -----TGGCGGAAAACGAATATGATTTTGTTTTC-----TGATCTGTCTT 832
BSNT_05283___ 827 TCAGGCTGAAGGATCATGCACGCATGCTGTTTTTAACCTCT----GTCAT 872
.||||.||||.||..||.|.|| |..|||||| |.| |.|||
BL00256 833 ACAGGATGAAAGACAATTCGCG---GACGTTTTT----TATGGTGGCCAT 875
BSNT_05283___ 873 TA---CAGCGGTCATATTAACAGCTACAGGTGTCAT-------CTATATG 912
|| |..|.|||..||| |||| |.||| ||.||
BL00256 876 TATCTCTACTGTCGCATT--CAGC-------GCCATTGGGACGCTGTA-- 914
BSNT_05283___ 913 TTTTATTCCGATTTACAAAGGCAGGAGGAGCAAA--GCATTCCTCAGTCT 960
||.|||.||||..|.||.| .|||| |.|||
BL00256 915 --------CGGTTTCCAAACTCTGGTG--ACAAACGGAATT--------- 945
BSNT_05283___ 961 GTTTCCTGGGTGGAAAAG-GATGCTTCCCG----CTTTCAGGTCAT-GAA 1004
|||| |||| ..|||| |.||| |||| .||
BL00256 946 --------------AAAGAGATG-AACCCGCATACGTTC---TCATATAA 977
BSNT_05283___ 1005 GCCTGAGACGGCTGA-------GAATACATTGAAAAA-AGCTCAT-GCTG 1045
|| ||.|.|| .||.||||.|||||| | |.| |||.
BL00256 978 GC------CGCCGGAAACAAACAAACACATCGAAAAAGA---CGTGGCTT 1018
BSNT_05283___ 1046 TTATCAAGTATAAGGTGGATGCCACAGGGAT-TC----CTGTCA---CTT 1087
|.|||||..|.|...|||||| |.||..|| || |.|.|| ||
BL00256 1019 TCATCAATGACACACTGGATG--AAAGAAATATCAAAACAGACAAAGCT- 1065
BSNT_05283___ 1088 TTCAGTCAGACTTGCCGTATGGAAATAAGAAGATGGAAGCGG--AAGCTC 1135
|||| ||..||.| .||||....||||...|||| |.|...
BL00256 1066 -----TCAG-CTGTCCTT----CAATATTTCGATGTCGGCGGCAATGACA 1105
BSNT_05283___ 1136 TGCTGATT-TCAGAAAAA----GTCTATAATCAA-------------GTC 1167
|||||||| | ||||.| |.|||||| ||| |||
BL00256 1106 TGCTGATTGT--GAAAGAATCTGACTATAA-CAAGTTTGCCGATCTCGTC 1152
BSNT_05283___ 1168 GCA----------------------AAGGAAAA----AGGGTTCCCAGTT 1191
|.| |.|||||| .||.|.||.|||
BL00256 1153 GGAGCCGACCACGTCAAGCTTGAAGACGGAAAAGCGGCGGCTGCCGAGT- 1201
BSNT_05283___ 1192 ATTCATTTACAAGAAAATGAAGCATTTATTAATGTTTCTTTTCAAATGAT 1241
||||.| |||| |||
BL00256 1202 ----------------ATGAGG-------------------TCAA--GAT 1214
BSNT_05283___ 1242 --GGTGAAAGACACATTTGGAGAAGGGGAAACAGCAGCAT---TTCATAT 1286
|.|.|.|| |||||.|..| |.||||||| | |||
BL00256 1215 CGGCTTAGAG--------GGAGATGATG-ACCAGCAGC-TCCCTTC---- 1250
BSNT_05283___ 1287 GAAGTCAGGAAAAACCCTATCCTACGTCATGAAAAAGCAGCAAAACA--- 1333
||| ||.||||.| ||.||| .|.||||||
BL00256 1251 ---GTC-----AATCCCTTT---------TGCAAA---TGGAAAACAACT 1280
BSNT_05283___ 1334 -AAGG--GAT--ATTGATGTCTGTTGA-----------TGGAGTCAGCCG 1367
|||| ||| |..|| ||.|||.| ||.|..||||..
BL00256 1281 GAAGGCTGATCAAACGA--TCCGTTCAAAAGCGTTATCTGAACCCAGCTA 1328
BSNT_05283___ 1368 TT-TATTGGTTGTCAGCGA-AAAGAGCTTTGGCAGTCTGTCACAGGATGT 1415
|| ||||| ||.|| || ||||| |||.|||
BL00256 1329 TTATATTG--TGACA--GACAAAGA--TTTCGCA---------------- 1356
BSNT_05283___ 1416 GCCGCTGAAGGAACAGATGAGAATGGTA-----GGTTATGAGCTTGAGCA 1460
|.||||||..|||.|| ||.|..| ||||.|..||.|| |||
BL00256 1357 -CAGCTGAAAAAACCGA----AAAGCGAAAACCGGTTCTATGCATG-GCA 1400
BSNT_05283___ 1461 TTGGCAGGAGACGGT----GGATGTCTCTGAAAAGCTTGAAAACATGG-- 1504
||||..|||.|.| |.|||.||.| || |||||.|..||
BL00256 1401 --GGCAAAAGAAGCTGACGGCATGGCTTT----AG--TGAAAGCCGGGGA 1442
BSNT_05283___ 1505 -----TGCCGAAAGAACA------TACATCTGATTTTCAAACAC-GTGCT 1542
|| |.|||||| | |||||.| |||| | |.|||
BL00256 1443 GGCTTTG-CAAAAGAA-ACTGGATTACATGT-ATTT-------CGGGGCT 1482
BSNT_05283___ 1543 CCTAG-TTATCA-------AAT-TGTGAAGC--AGGGAGTTGC-----AT 1576
.||| ||||.| ||| | |||| ||||..|.|| ||
BL00256 1483 -GTAGATTATGAGGTATATAATAT---AAGCAAAGGGTATGGCCCGATAT 1528
BSNT_05283___ 1577 TAATGCTGTTTATTGGTCTGTTTGTC---AGCGTGCTGTT--TTTTATCG 1621
|| |||.|.||.||||||.|| |.|||..|.|| |||.|.|
BL00256 1529 TA------TTTGTCGGACTGTTTATCGGAATCGTCTTCTTCGTTTCAGC- 1571
BSNT_05283___ 1622 TGCAAGGAAGCATGCTGTATTTGCGGATGTTTACGGAAATAGAAGATACG 1671
|||||||.|.||.|||||.|||.|||..||.||..|.||.|||
BL00256 1572 ----AGGAAGCTTCCTCTATTTCCGGTTGTACACTGATTTGGACGAT--- 1614
BSNT_05283___ 1672 AGAGTGCAGGTGTTAGC----CTTAAAAAGGAT--------AGGGGTTA- 1708
|| |.||| .||.|||..||| .|||.|||
BL00256 1615 -GA---------TAAGCAGAAATTCAAATCGATTGCCAAAATGGGCTTAA 1654
BSNT_05283___ 1709 -------CGGAC-----AAAGAGATTCACTCGATCCTTGGAAAGCAAATA 1746
||.|| ||||.|.|..|| |.|||.||.
BL00256 1655 CAGACCGCGAACTGCATAAAGTGCTGAAC------------AGGCAGATC 1692
BSNT_05283___ 1747 GGATTTTTATTCTTCATCCCATTTATCGCAGGTACGATT---CA------ 1787
||..|.||.||||||...|| ||||||.|.|.|..|| ||
BL00256 1693 GGCATCTTGTTCTTCGCGCC---TATCGCTGTTGCCCTTGTCCATGGAGC 1739
BSNT_05283___ 1788 -----CGCGG---GCTTT-GCGTATGCAGCGTTAAGTAATATGCTGAATT 1828
|||.| ||||| .||.|||| |.||.||||
BL00256 1740 TGTGGCGCTGACCGCTTTATCGCATGC--CTTTCAGTA------------ 1775
BSNT_05283___ 1829 CCAATTTATTTCTT----GAGGCCGTAATTGTCATCTTCATTTATTTTGT 1874
|| |..|||| ||..|.|.|||.||..||..|.|.|..||.|.
BL00256 1776 -CA----ACCTCTTCAAGGAATCTGCAATGGTGCTCGGCGTGTTCTTCGC 1820
BSNT_05283___ 1875 ATTCCAGGCTGTTTATTATATCGTCACCCGC---------------CATA 1909
..||||||...|.|||||..||.||..|||| ||.|
BL00256 1821 CATCCAGGTCATATATTACTTCATCGTCCGCTTCTACTATACAAAACAGA 1870
BSNT_05283___ 1910 TTTATAAGCGTGCTGTTCTTCAGCGTATGTAA 1941
||.||||| ||| ||.|||
BL00256 1871 --TAAAAGCG------------GCG-ATTTAA 1887
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