Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05771 and BL00235
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05771___ywfE.1.5803.seq
# -bsequence dna-align/BL00235.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05771___ywfE-BL00235.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05771___ywfE-BL00235.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05771___ywfE
# 2: BL00235
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1754
# Identity: 753/1754 (42.9%)
# Similarity: 753/1754 (42.9%)
# Gaps: 811/1754 (46.2%)
# Score: 1209.5
#
#
#=======================================
BSNT_05771___ 1 -------ATGGAGAGAAAAACAGTATTGGTCATCGCTGATCTTGGAGGCT 43
|..||.|.|||||| ||||.|||
BL00235 1 TTGACGAAACGAAACAAAAAC----TTGGCCAT----------------- 29
BSNT_05771___ 44 GCCCGCCGCACATGTTTTATAA-AAGCGCTGCTGAAAAATATAACCTGGT 92
|||.|.|.|.|| |||| |||| |.
BL00235 30 ----------CATTTGTCAAAATAAGC----------------ACCT-GC 52
BSNT_05771___ 93 CAGCTTTATTCCAAGACCTTTTGCA-ATTACAGCCTCCCATGCAGCATT- 140
|| ||||| |||||.| | ||| || |||.||
BL00235 53 CA--TTTAT---------TTTTGAAGA----AGC------TG-AGCGTTT 80
BSNT_05771___ 141 --GATTGAAAAATACTCGGTCGCGGTCATAAAAGATAAAGACTATTTTAA 188
||||||| ||||.||.|| |||.|
BL00235 81 AGGATTGAA--------GGTCACGTTC------------------TTTTA 104
BSNT_05771___ 189 GAGTTTAGC---TGATTT--TGAGC-ATCCTGATTCCATTTATTGGGCGC 232
.|.||..|| .||||| .|.|| ||| |||| |||
BL00235 105 CAATTCGGCCGAAGATTTCCCGGGCAATC----TTCC--------GGC-- 140
BSNT_05771___ 233 ATGAGGATCATAACAAGC---------CT-------------GAGGAAGA 260
||.||| |.|| || ||.|||||
BL00235 141 -TGTGGA-------ACGCTGTGTGCCGCTGCCGTTGTTTGAAGATGAAGA 182
BSNT_05771___ 261 GGTCGTCGA-GCAAATCGTCAAGG-------TTGCCGAAAT---GTTTG- 298
.| ||.||| |.|..||||| ||| |||.||||.| |||||
BL00235 183 AG-CGGCGATGGATGTCGTC-AGGCAGACATTTGTCGAATTTCCGTTTGA 230
BSNT_05771___ 299 GGGCG-GATGCCATCACAACAAACAATGAATTATT--------CATTGC- 338
.|||| |||| |||.|| || |.||||
BL00235 231 CGGCGTGATG------------ACACTG-----TTTGAACCGGCTTTGCC 263
BSNT_05771___ 339 --TCCGATGGCGAAAGC--------CTGTGAACGTCTGGGCCTGAGAGGT 378
|| |.|||.||||| ||.|||| || |
BL00235 264 TTTC--ACGGCAAAAGCTGCTGAAGCTTTGAA--TC-------------T 296
BSNT_05771___ 379 GCCGGCGTGCAGGCAGCC-------------GAAAA-TGCCAGAGATAAA 414
||||| |||..|| ||||| |||| |..|||||
BL00235 297 GCCGG------GGCTTCCTTTCACAACAATGGAAAACTGCC-GCAATAAA 339
BSNT_05771___ 415 AATAAAATGAGGGACGCTTTTAATAAGGCCGGAGTCAAA--TCGATCAAA 462
||||||| .|||.|| ||.| || |.||
BL00235 340 AATAAAA--------------------CCCGCAG-CATACTTC-AGCA-- 365
BSNT_05771___ 463 AACAAACGAGTCACAACTCTTGAAGATTTCCGTGCTGCTCTTGAAGAGAT 512
||||| || |||||.|...
BL00235 366 ---AAACG----------------GA--------------TTGAATACGC 382
BSNT_05771___ 513 CGGCACACCTCTTATCTTAAAGCCTACATACTTAGCGAGTTCAATCGGTG 562
||| |..||..|||||||.||
BL00235 383 CGG-------------------------TTTTTCACGAGTTCCAT----- 402
BSNT_05771___ 563 TAACGCTGATTACG--GACACTGAGACGGCAGAAGATGAATTTAACAGAG 610
||||| || ||| ||| ||| |||||
BL00235 403 --ACGCT-----CGCTGAC-CTG--------------GAA---AACAG-- 425
BSNT_05771___ 611 TCAATGACTATC-TGAAATCAATTA-ACGTGCCAAAGGCGGTTA----CG 654
.|| |||.|| | |||.|||| .||| .|||.||||.| |.
BL00235 426 -GAA--ACTGTCGT---ATCCATTAGTCGT---CAAGCCGGTCAACGGCT 466
BSNT_05771___ 655 TTTGAAGC----------GCCGT-----TTATCGCTGAAGAATTTTTACA 689
|.|.|||| .|||| |.|||| ||||.|..||.|
BL00235 467 TCTCAAGCCAGGGCGTCGTCCGTGTTGATGATCG--GAAGGAGCTTGA-- 512
BSNT_05771___ 690 GGGTG--AGTACGGAGACTGGTA-----TCAAACAGAAGGGTACTC---C 729
||.| .||.||||.|.|.| | ||||.|| |||||..||| |
BL00235 513 -GGAGGCCGTCCGGAAAGTCG-AGGCCGTCAACCA-AAGGGACCTCAATC 559
BSNT_05771___ 730 GACTATATCA--GTATAGAAGGCATCATGGCTGACGGTGAG-TATTTCCC 776
||.|....|| |.|.|...||||||.|.|| .||| .||||..|
BL00235 560 GATTCGTGCACGGCAAAACGGGCATCGTAGC------CGAGCAATTTATC 603
BSNT_05771___ 777 GAT----CGCCATTCATGA-TAAAACGCCGCAAATCGGGTTTACAGAGAC 821
||| ||..||||..|| |.||||||.| || |.||.|..||.||
BL00235 604 GATGGGCCGGAATTCGCGATTGAAACGCTG----TC-GATTCAAGGAAAC 648
BSNT_05771___ 822 ATCCCACAT---------------TAC-----------------GCCGTC 839
.| |||| ||| |||||
BL00235 649 GT---ACATGTTCTTTCGATTGGATACAAAGGGAACAGCAAAGGGCCGT- 694
BSNT_05771___ 840 CATTCTGGATGAAGAGG-----------------CAA--AAAAGAAAATT 870
||.|.||.||||.|| ||| .||||||.|
BL00235 695 --TTTTTGAAGAAGGGGTCTATATTGCTCCGGCTCAATTGAAAGAAGA-- 740
BSNT_05771___ 871 GTCGAAGC----TGC------CAAAAAGGCAAATGAAGGGCTTGGCC--T 908
||.|| ||| ||| |.||.|||.|||| ||| |
BL00235 741 ---GACGCGCCTTGCGATCGTCAA----GGAAGTGACGGGC---GCCGTT 780
BSNT_05771___ 909 GCAAAATTGCG---------CAACA----------CATACAGAGATCAAG 939
.|| ||| ||.|| |||||||||.|.|.|
BL00235 781 TCA-----GCGCTGGGCATTCACCAGGGGCCGGCTCATACAGAGCTGAGG 825
BSNT_05771___ 940 CTAATGAAAA--ACAGAGAACCGGGTTTA----ATAGA-GTCGGCAGCCA 982
|| .||.|| |..||..||| ||| ||.|| ||.||| ||||
BL00235 826 CT--GGACAAGGATGGAACACC----TTATGTTATCGAGGTGGGC-GCCA 868
BSNT_05771___ 983 GATTCG------CAGGCTGGAATATGATTCCTAATA-----TTAAAAAGG 1021
||.||| |||| .|.||||.|.|| |.|||.||.
BL00235 869 GAATCGGCGGTTCAGG--------GGTTTCCCATTACATCGTCAAAGAGA 910
BSNT_05771___ 1022 TCTTTGGCCTTGATATGGCGCAATTATTAT-TAGATGTCCTCTGTTTCGG 1070
.|...|||.| |||.| |||| .||.| |||.|.|.
BL00235 911 GCACAGGCAT----------CAACT-TTATGCAGCT------TGTCTTGC 943
BSNT_05771___ 1071 AAAA------GACGCCGATCTGCCGGACGGATTA------TTG------- 1101
|||| .|.||| ||.||| ||..| |||
BL00235 944 AAAATGCATTAAAGCC-----GCTGGA--GAGCAGCGAGTTTGAAGGCGA 986
BSNT_05771___ 1102 GATCA-----------AGAGCC--TTATTATGTTGCCGACTGCCATT--T 1136
||||| |.|||| ..|||||.| |||| |
BL00235 987 GATCAGGCCTGTAAGGACAGCCGGCAATTATAT----------CATTCCT 1026
BSNT_05771___ 1137 GTAC------CCGCAGCA--TTTCAAACAAAATGGCCAGATTCCAGAAAC 1178
|||| ||| ||| |||.|| |||||.|.|.||
BL00235 1027 GTACAGGGCTCCG--GCACTTTTGAA--AAAATCGACGGA---------- 1062
BSNT_05771___ 1179 CGCTG--AGGATTTGGTCATTGAAGCGATCGATATTCCGG-ACGGGCTTT 1225
||| ||.| |||| ||..|| || |.|.|.||
BL00235 1063 --CTGGAAGAA----GTCA---AACAGA----------GGCAGGAGGTT- 1092
BSNT_05771___ 1226 TAAAAGGGGATACTGAAATCGTTTCATTTT-------CAGCCGCA----- 1263
|||.||.| ||||||.||| .||.||||
BL00235 1093 ---AAGCGGGT---------GTTTCAATTTATGAGAAGAGGCGCAAAGAT 1130
BSNT_05771___ 1264 ------GCACCAGGCACTT---CAGTTGAT------------TTGA---- 1288
|.||| .|||||| |.||| || ||.|
BL00235 1131 CCTCCCGTACC-CGCACTTTTCCGGTT-ATCCGGGGTTTATATTAACAAG 1178
BSNT_05771___ 1289 ----CATTGTT----------TGAAGCTTTCAATTCCATTGCTGCATTTG 1324
||||.|| |||||||||| |.||
BL00235 1179 CCATCATTCTTATGAAGAATGTGAAGCTTTC--TACC------------- 1213
BSNT_05771___ 1325 AACTGAAAGGCAGTAATTCACAGGATG-TG-GCTGAATCA-ATCAGACAA 1371
||.|| |.||||| || ||| ||| |||
BL00235 1214 --------GGGAG-------CTGGATGATGAGCT---TCATATC------ 1239
BSNT_05771___ 1372 ATTCAGCAGCATGCAAAGCTGACGGCAAAGTATGTGCTGCCAGTATGA-- 1419
|||.|.||..|| ||..|||||| ||| ||.||.||
BL00235 1240 ATTTATCAAAAT---AATTTGACGG----GTA--------CAATAGGAGG 1274
BSNT_05771___ 1419 ---- 1419
BL00235 1275 TTAA 1278
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