Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06045 and BL00228
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_06045___nupC.1.5803.seq
# -bsequence dna-align/BL00228___nupC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06045___nupC-BL00228___nupC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06045___nupC-BL00228___nupC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06045___nupC
# 2: BL00228___nupC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1197
# Identity: 898/1197 (75.0%)
# Similarity: 898/1197 (75.0%)
# Gaps: 30/1197 ( 2.5%)
# Score: 3237.5
#
#
#=======================================
BSNT_06045___ 1 ATGAAGTATTTGATTGGGATTATCGGTTTAATCGTGTTTTTAGGCCTCGC 50
|||||.|||.|.||.|||.|.||.||||||.|.||..|.|||||.||.||
BL00228___nup 1 ATGAAATATCTCATCGGGCTCATTGGTTTATTTGTCGTCTTAGGGCTTGC 50
BSNT_06045___ 51 GTGGATCGCGAGCAGCGGCAAAAAAAGAATTAAGAT-CCGCCCAATTGTT 99
.|||.|.|..||||||||.||.||||||.|.|| || ||||||..||.|.
BL00228___nup 51 ATGGCTGGTCAGCAGCGGAAAGAAAAGAGTGAA-ATACCGCCCGGTTATC 99
BSNT_06045___ 100 GTTATGCTCATTTTGCAATT--TATTCTTGGCTACATTCTCCTCAATACC 147
||.|||.||.|..||||||| .|| |.||.||.||..|.||.||.||.
BL00228___nup 100 GTCATGATCGTGCTGCAATTCGCAT--TGGGATATATATTGCTGAACACG 147
BSNT_06045___ 148 GGGATAGGGAATTTCCTCGTAGGAGGATTTGCAAAAGGTTTCGGTTACCT 197
||..|.||.||.|..|||||.||.||.|||||.||.||.|||||.||..|
BL00228___nup 148 GGTGTCGGAAACTATCTCGTCGGCGGTTTTGCCAAGGGCTTCGGCTATTT 197
BSNT_06045___ 198 GCTTGAATACGCGGCAGAGGGAATTAACTTTGTGTTTGGCGGCTTGGTGA 247
|||||||||.||||||||.||..|.||.|||||.||||||||..||||||
BL00228___nup 198 GCTTGAATATGCGGCAGAAGGTGTGAATTTTGTCTTTGGCGGACTGGTGA 247
BSNT_06045___ 248 ATGCGGACCAAACGACATTCTTTATGAATGTTCTCTTGCCAATCGTGTTT 297
|||.|.|..||.|.||||||||.||.|..||.||..|.||.||.||.|||
BL00228___nup 248 ATGTGAATGAATCCACATTCTTCATCAGCGTACTTCTACCGATTGTTTTT 297
BSNT_06045___ 298 ATTTCCGCTCTGATCGGGATTCTGCAAAAGTGGAAAGTCCTCCCGTTTAT 347
||.||.|||.|.|||||.|||||||||.|.||||.|.||||.||||||||
BL00228___nup 298 ATATCTGCTTTAATCGGTATTCTGCAATATTGGAGAATCCTTCCGTTTAT 347
BSNT_06045___ 348 CATTAGATATATCGGCCTTGCCCTCAGCAAGGTAAACGGTATGGGAAGAT 397
.||.|.||||||.||.|||||.||||||||..|.|||||.|||||.|.|.
BL00228___nup 348 TATAAAATATATTGGTCTTGCGCTCAGCAAAATCAACGGGATGGGCAAAC 397
BSNT_06045___ 398 TGGAATCGTATAACGCAGTGGCTTCTGCGATTTTAGGGCAGTCAGAAGTA 447
||||.||.||.||.||.||||||||.|||||..|.|||||.||.||||||
BL00228___nup 398 TGGAGTCATACAATGCCGTGGCTTCGGCGATACTGGGGCAATCTGAAGTA 447
BSNT_06045___ 448 TTTATCTCCTTGAAGAAAG-AACTCGGTCT----TTTAAATCAGCAGCGC 492
||.||.||.|| ||.|||| |.||.||.|| ..|||| || ||| .|
BL00228___nup 448 TTCATTTCGTT-AAAAAAGCAGCTTGGCCTGCTGCCTAAA-CA-CAG-AC 493
BSNT_06045___ 493 TTGTACACGCTTTGCGCATCTGCGATGTCAACTGTATCAATGTCGATTGT 542
|| ||.|||||.|||||.||.||||||||.||.||.||.|||||.||.||
BL00228___nup 494 TT-TATACGCTGTGCGCTTCGGCGATGTCGACCGTCTCGATGTCTATCGT 542
BSNT_06045___ 543 CGGCGCGTATATGACAATGCTGAAACCGGAATATGTTGTAACAGCGCTTG 592
||||||.||||||||.||||||||.||.|||||.|||||.||.|||||.|
BL00228___nup 543 CGGCGCCTATATGACGATGCTGAAGCCCGAATACGTTGTCACCGCGCTCG 592
BSNT_06045___ 593 TTTTGAACTTATTTGGCGGTTTCATTATCGCTTCTATTATCAATCCGTAC 642
|.|||||||||||.|||||.||.|||||||||||.|||||||||||.||.
BL00228___nup 593 TATTGAACTTATTCGGCGGATTTATTATCGCTTCGATTATCAATCCTTAT 642
BSNT_06045___ 643 GAGGTTGCAAAAGAAGAGGATATGCTTCGT----GTTGAGGAAGAAGAAA 688
||.||.|....||||.|.|||||| || ||..|||||||.||||
BL00228___nup 643 GAAGTCGATCGAGAACATGATATG----GTAGAGGTACAGGAAGAGGAAA 688
BSNT_06045___ 689 AACAATCCTTCTTCGAAGTGCTCGGAGAATACATTCTTGACGGTTTCAAA 738
|||||||||||||.|||.||||.||.|||||.|||.|.|||||.||.|||
BL00228___nup 689 AACAATCCTTCTTTGAAATGCTGGGCGAATATATTATGGACGGCTTTAAA 738
BSNT_06045___ 739 GTAGCGGTTGTCGTCGCTGCGATGCTGATTGGATTTGTCGCGATTATTGC 788
||.||.||.|||||.||.||.||||||||.||||||||||||||.||.||
BL00228___nup 739 GTCGCCGTCGTCGTGGCCGCCATGCTGATCGGATTTGTCGCGATCATCGC 788
BSNT_06045___ 789 CTTGATCAATGGCATTTTTAATGCAGTATTCGGTATTTCGTTCCAAGGCA 838
..||||.||.||||||||.|..||.|.|.|.|||||.||.|||| |||.|
BL00228___nup 789 AATGATTAACGGCATTTTCAGCGCCGCACTAGGTATATCATTCC-AGGAA 837
BSNT_06045___ 839 -TTCTTGGATATGTGTTTGCTCCATTCGCTTTTCTTGTGGGTATCCCATG 887
|.||.||||.|.|.|||||.||.||.||.||.||..|||||||.|||||
BL00228___nup 838 CTGCTCGGATTTATTTTTGCGCCGTTTGCCTTCCTGATGGGTATTCCATG 887
BSNT_06045___ 888 GAATGAAGCTGTTAATGCGGGAAGCATTATGGCAACAAAAATGGTATCGA 937
|.|||||||.||.|||||.|||||.||.||||||||.||||||||.||.|
BL00228___nup 888 GCATGAAGCGGTGAATGCTGGAAGTATCATGGCAACCAAAATGGTCTCAA 937
BSNT_06045___ 938 ATGAATTTGTCGCCATGACGTCGCTTACGCAAAA--CGGTTTCCATTTCA 985
|||||||||||||.|||..|||.|| ||||.|| |.|.||||||||||
BL00228___nup 938 ATGAATTTGTCGCGATGCAGTCTCT--CGCACAAGGCAGCTTCCATTTCA 985
BSNT_06045___ 986 GCGGCCGTACAACAGCGATCGTATCGGTATTCCTTGTGTCCTTTGCGAAC 1035
|||||||.||...||||||.||.||.||.|||||.||.||.|||||.||.
BL00228___nup 986 GCGGCCGCACCGAAGCGATTGTTTCCGTCTTCCTCGTCTCATTTGCCAAT 1035
BSNT_06045___ 1036 TTCTCCTCAATCGGAATCATTGCCGGTGCCGTAAAAGGACTGAATGAAAA 1085
|||||.||.|||||.||.||.||||||||.||.||||||||||||||.||
BL00228___nup 1036 TTCTCATCGATCGGTATTATCGCCGGTGCGGTTAAAGGACTGAATGAGAA 1085
BSNT_06045___ 1086 GCAAGGAAATGTCGTCGCTCGTTTCGGCTTGAAATTATTATACGGTGCTA 1135
.||||||||.||||||||.||.|||||.||||||||..|.|||||.||.|
BL00228___nup 1086 ACAAGGAAACGTCGTCGCGCGCTTCGGGTTGAAATTGCTGTACGGCGCAA 1135
BSNT_06045___ 1136 CGCTTGTCAGCTTTTTATCAGCAGCAATTGTGGGCTTGATTTACTGA 1182
||||.|||||.||.||..||||..|..||||.||.|||||.||.|||
BL00228___nup 1136 CGCTCGTCAGTTTCTTGACAGCGACCGTTGTAGGATTGATCTATTGA 1182
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