Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05988 and BL00221
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:02
# Commandline: needle
# -asequence dna-align/BSNT_05988___deaD.1.5803.seq
# -bsequence dna-align/BL00221___deaD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05988___deaD-BL00221___deaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05988___deaD-BL00221___deaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05988___deaD
# 2: BL00221___deaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1487
# Identity: 1021/1487 (68.7%)
# Similarity: 1021/1487 (68.7%)
# Gaps: 88/1487 ( 5.9%)
# Score: 3254.5
#
#
#=======================================
BSNT_05988___ 1 ATGAGTCA-------TTTTAAAAACTATCAAATCAGTCATGAC-ATTTTA 42
||||| || |||||.|.|||||..|.|.|| .|.| ||.|||
BL00221___dea 1 ATGAG-CAAAGCCAGTTTTAGAGACTATGCATTAAG---CGGCGATATTA 46
BSNT_05988___ 43 CGAGCATTGGAAGGAC---------TGGGATATACAGAACCGACCAAGGT 83
||| |||..| |.|||||||..||.|||||...|||
BL00221___dea 47 CGA-------AAGCGCTCGATCACTTAGGATATAAGGAGCCGACTGCGGT 89
BSNT_05988___ 84 GCAGCAGAG-TGTGATCCCCGC--TGCCCTAGAA--CGAAAGGATCTTGT 128
|||| ||.| .|||||.||||| || |.||.|| || ||||.||||
BL00221___dea 90 GCAG-AGCGAAGTGATTCCCGCGGTG-CTTAAAAAGCG---GGATGTTGT 134
BSNT_05988___ 129 CGTCAAATCACAGACAGGAAGCGGGAAAACGGCTTCGTTCGGGATTCCTC 178
.||.|||||.|.|||.||.||||||||.|||||..|||||||.|||||.|
BL00221___dea 135 GGTGAAATCGCGGACGGGGAGCGGGAAGACGGCCGCGTTCGGAATTCCGC 184
BSNT_05988___ 179 TCTGTGAGCTGGCGGATTGGGATGAAAACAAGCCGCAGGCGCTT-ATTTT 227
|.||.||||||.|.||.|||||.||.|||||.||.||.|| ||| .||||
BL00221___dea 185 TTTGCGAGCTGACCGAATGGGAAGAGAACAAACCACAAGC-CTTGGTTTT 233
BSNT_05988___ 228 AACTCCAACCCGTGAGCTTGCGGTGCAAGTAAAGGAAGATATCACGAACA 277
.||.||.||.||.||||||||.|..||.||.|||||.|||.|.|||||||
BL00221___dea 234 GACACCGACGCGCGAGCTTGCCGCTCAGGTTAAGGAGGATTTGACGAACA 283
BSNT_05988___ 278 TCGGACGATTTAAACGGATCAAAGCGACAGCCGTATTTGGAAAATCCTCC 327
||||.||.|.||||.|.||.|||||..|.||.||.|..||.||.||.|||
BL00221___dea 284 TCGGCCGCTATAAAAGAATAAAAGCAGCGGCTGTTTACGGGAAGTCATCC 333
BSNT_05988___ 328 TTTGATAAACAAAAAGCTGAGCTTAAGCAAAAAAGTCACATTGTTGTCGG 377
|||||....||||||.|.|||||.|||||||||.|.||.||.||||||||
BL00221___dea 334 TTTGAACGGCAAAAAACGGAGCTCAAGCAAAAATGCCATATCGTTGTCGG 383
BSNT_05988___ 378 TACGCCGGGACGTGTTCTGGATCATATCGAAAAAGGCACGCTGCCGTTGG 427
..|||||||.||.||..|||||||.||.||||||||.||.||.||.||.|
BL00221___dea 384 GCCGCCGGGCCGCGTATTGGATCACATTGAAAAAGGAACCCTTCCATTAG 433
BSNT_05988___ 428 ATCGTCTCTCTTATTTGGTCATTGATGAAGCGGATGAGATGCTGAATATG 477
|....||....||..|.|||||.|||||.||.|||||.||||||||||||
BL00221___dea 434 AAAAACTGAAATACCTTGTCATCGATGAGGCCGATGAAATGCTGAATATG 483
BSNT_05988___ 478 GGCTTTATCGAGCAGGTGGAGGCGATTATCAAGCATCTTCC-GACTGAGC 526
||.||||||||.||.||||..||.||.|||...|||.|.|| || .||.|
BL00221___dea 484 GGATTTATCGATCAAGTGGGAGCAATCATCCGCCATTTGCCTGA-AGAAC 532
BSNT_05988___ 527 GCACGACGATGCTGTTTTCGGCGACGCTGCCAGAGGACATTGAGAAATTA 576
|...|||.|||||||||||.||.||..|.||.|||||..|.|||.|..||
BL00221___dea 533 GGCTGACAATGCTGTTTTCAGCAACTTTTCCGGAGGATGTGGAGCATCTA 582
BSNT_05988___ 577 AGCCGTCAATATATGCAAAACCCGGAGCATATCGAAATCAAAGCGGCCGG 626
..||.||||||||||.||.||||...|.|.|||||.||.|||||.|.|||
BL00221___dea 583 TCCCTTCAATATATGAAAGACCCTTTGAAAATCGAGATTAAAGCAGGCGG 632
BSNT_05988___ 627 GCTTACCACAA---GAAATATTGAACATGCGGTGATTCA-AGTAAGAGAA 672
|||.|||| .|.|.||.||.|||....||| ||| .||||..|||
BL00221___dea 633 ---TACGACAACCGCAGACATCGAGCATCAACTGA-TCATTGTAAACGAA 678
BSNT_05988___ 673 GAGAATAAATTTTCATTGCTGAAA---GATGTGCTGATGACGGAGAATCC 719
.|..||..|||||| |||...| |||.||.|.||....||.||.||
BL00221___dea 679 AATGATCCATTTTC---GCTTTTAGTGGATCTGTTCATTGTTGAAAACCC 725
BSNT_05988___ 720 CGACAGCTGCATCATTTTCTGCCGAACGAAAGAGCACGTCAATCAGCTG- 768
.||||||||||||.|.||.|||||.||..|.|||||.||.|||.||.||
BL00221___dea 726 GGACAGCTGCATCGTCTTTTGCCGCACACAGGAGCAAGTGAATGAGTTGC 775
BSNT_05988___ 769 ------ACCGATGAATTGGATGACTTAGGATATCCATGCGATAAAATTCA 812
.||.||...|| ||.||.|||||.|||||.||||||||
BL00221___dea 776 AGTGGCGCCTATCCGTT-------TTGGGTTATCCGTGCGAGAAAATTCA 818
BSNT_05988___ 813 CGGCGGAATGATTCAGGAAGACCGATTCGACGTCATGAATGAATTTAAAC 862
||||||.|||..||||||.||.||.||.|.|||.|||||....||.|.||
BL00221___dea 819 CGGCGGCATGCCTCAGGAGGATCGTTTTGCCGTGATGAACCGTTTCAGAC 868
BSNT_05988___ 863 GTGGCGAGTACCGTTACTTAGTGGCGACGGATGTCGCCGCGCGCGGGATT 912
|.||.|.||.|||.||.|||.|.|||||.|||||.||.||..|.||.||.
BL00221___dea 869 GGGGAGCGTTCCGCTATTTAATCGCGACAGATGTGGCGGCAAGAGGCATC 918
BSNT_05988___ 913 GATATTGAAAATATCTCCCTTGTTATCAACTATGATCTTCCGGTTGAAAA 962
||.|||||.||.|||.|.|.|||.|||||||||||.||.||..|.||..|
BL00221___dea 919 GACATTGAGAACATCACACATGTCATCAACTATGAGCTGCCATTAGATCA 968
BSNT_05988___ 963 GGAAAGCTATGTCCACCGCACGGGCCGAACGGGACGCGCGGGGAACAAAG 1012
.|||||||||||.||.||.||.||..||||.||.||.||.||.|.|...|
BL00221___dea 969 AGAAAGCTATGTGCATCGTACCGGAAGAACAGGCCGAGCCGGCAGCCGGG 1018
BSNT_05988___ 1013 GAAAGGCCATTTCGTTTGTCACGGC-CTTCGAAAAACGGTTTTTAGCCGA 1061
||||.||.|||.|..|||.||..|| |.| |||||..||.|..|.||.||
BL00221___dea 1019 GAAAAGCGATTACTCTTGCCAGTGCGCGT-GAAAAGAGGATGATTGCTGA 1067
BSNT_05988___ 1062 CATTGAAGAATATATCGGATTTGAAATCCAAAAAATAGAAGCCCCTTCTC 1111
|||||||||.||||||||.|||.|.||.|..|..||.||.|..||.||..
BL00221___dea 1068 CATTGAAGACTATATCGGTTTTCATATTCCTATTATTGAGGAGCCGTCAA 1117
BSNT_05988___ 1112 AAGAGGAAGTGGCAAGGAAGAAACCAGAATTTCTAGCTAAACTGAATGAC 1161
||||.|||.|.|||.||...|||.|.|..||||.|...|||.|.|||
BL00221___dea 1118 AAGAAGAAATTGCACGGGCAAAAGCGGCGTTTCAAAAGAAAATCAAT--- 1164
BSNT_05988___ 1162 CGTCCGGAA-----AGC--AAAAAGGACAAAAGCGAAGAGTTGAATAAAG 1204
.|||| ||| |||.|||||||.||||||..|||.|||||.|
BL00221___dea 1165 ----AGGAAGCCGGAGCTTAAACAGGACAAGAGCGAATCGTTAAATAAGG 1210
BSNT_05988___ 1205 ACATTATGAAGCTGTATTTTAACGGCGGAAAGAAAAAGAAAATCAGAGCC 1254
|.||.||||.|||.||.||||||||.|||||.||.|||||..|.|||||.
BL00221___dea 1211 AAATCATGAGGCTCTACTTTAACGGGGGAAAAAAGAAGAAGCTTAGAGCT 1260
BSNT_05988___ 1255 GTTGATTTTGTAGGAACGATTGCCAAAATTGACGGTGTGTCAGCTGACGA 1304
||||||||.||.|||||||||||.|||||||||||.||.||.||.||.||
BL00221___dea 1261 GTTGATTTCGTCGGAACGATTGCTAAAATTGACGGCGTCTCCGCCGAGGA 1310
BSNT_05988___ 1305 CATCGGCATCATCACGATCATGGATAACGCCTCATACGTTGAGATTTTAA 1354
.|||||.||.|||||||||..|||..|.|..||||.||||||.|||||||
BL00221___dea 1311 TATCGGGATTATCACGATCCAGGAGCAAGGTTCATTCGTTGAAATTTTAA 1360
BSNT_05988___ 1355 ATGGTAAAGGCCCTCATGTTCTCA-AAGTGATGAAGAACACAACCGTCAA 1403
|.||.|||||.||.| |..|||.| |.|.||||||.|||||.||.||.||
BL00221___dea 1361 ACGGCAAAGGTCCGC-TCGTCTTAGATGCGATGAAAAACACGACAGTGAA 1409
BSNT_05988___ 1404 AGGGAAACAGCTGAAGGTGAATAAAGCGAATAAATGA 1440
|||||||..||||||.|||.|||||||||..||||.|
BL00221___dea 1410 AGGGAAATTGCTGAAAGTGCATAAAGCGAGGAAATAA 1446
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