Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05153 and BL00204
See
Amino acid alignment /
Visit
BSNT_05153 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:16
# Commandline: needle
# -asequence dna-align/BSNT_05153___yvfR.1.5803.seq
# -bsequence dna-align/BL00204___yvfR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05153___yvfR-BL00204___yvfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05153___yvfR-BL00204___yvfR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05153___yvfR
# 2: BL00204___yvfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 948
# Identity: 647/948 (68.2%)
# Similarity: 647/948 (68.2%)
# Gaps: 96/948 (10.1%)
# Score: 1977.5
#
#
#=======================================
BSNT_05153___ 1 ATGAAAGAAGTAGTAACAGTAAGCAACGTGACAAA-ACATTTCCATCGAA 49
||||...|.||.||||...|.|..||.|||||||| ||| ||||..|.||
BL00204___yvf 1 ATGAGCAATGTTGTAAGCTTGACGAATGTGACAAAGACA-TTCCGCCAAA 49
BSNT_05153___ 50 AAACCGCTGTAAACCACATCAG---CTTCAGTATTGAAAAAGGAGAAATT 96
||||.||.||..|.||.|| || .|||| |||.||||||||||||||
BL00204___yvf 50 AAACGGCGGTTGATCAGAT-AGATTTTTCA--ATTAAAAAAGGAGAAATT 96
BSNT_05153___ 97 GCAGCCATTCTCGGGCCAAATGGGGCAGGGAAGACGAC--CGTCATCTCT 144
|.|||||||||.||||||||.||.||.|||||.||.|| || ||.||.
BL00204___yvf 97 GTAGCCATTCTAGGGCCAAACGGAGCCGGGAAAACAACAACG--ATTTCA 144
BSNT_05153___ 145 ATGATATTAGGATTGCTGAAACCGAGTGAGGGAGAAATCAAACTATTTAA 194
||||||||.||..||.|.|||||||..|..||..|.||||.|.||||
BL00204___yvf 145 ATGATATTGGGGCTGTTAAAACCGACGGCTGGCAACATCACATTATT--- 191
BSNT_05153___ 195 CCGGGTTC----CCG-ATGATCAACAGGTTCGTGAAAAAATAGGTGTAAT 239
.|.||| ||| ||||..|||.|||.|||||||||||.||....||
BL00204___yvf 192 --CGATTCCATGCCGCATGAAAAACGGGTGCGTGAAAAAATCGGCACGAT 239
BSNT_05153___ 240 GCTTCAGGAAGTAAGTGTCATGCCGGGCCTTAAGGTG--GATGAAATTCT 287
|||.||||||||.||.||||||||.|| ||...||| |.||||||..|
BL00204___yvf 240 GCTCCAGGAAGTCAGCGTCATGCCTGG--TTTGCGTGCAGGTGAAATCAT 287
BSNT_05153___ 288 TGAACTCTTCCGGAGCTATTATCCGAATCCATTGTCCATGAAAGAACTCG 337
.||||||.||||||||||.|||||.||.||..|.|||.|..||.| |
BL00204___yvf 288 CGAACTCATCCGGAGCTACTATCCAAAGCCTCTATCCTTTCAAAA----G 333
BSNT_05153___ 338 TTT----CGTTAACAGCACTCACCAAAGAA-GATTTGAAAACA-AGAGCA 381
.|| ||||.||||...|.| ||.|.|| |||||.|||||| || |||
BL00204___yvf 334 CTTAGAACGTTGACAGGTTTGA-CAGACAAGGATTTAAAAACACAG-GCA 381
BSNT_05153___ 382 GAAAAATTATCCGGCGGACAAAAACGCCGTTTGAGCTTTGCTTTGGCTCT 431
|||||.||.||||||||.|||||.||.|||.|..|||||||.|||||.||
BL00204___yvf 382 GAAAAGTTGTCCGGCGGGCAAAAGCGGCGTCTAGGCTTTGCCTTGGCACT 431
BSNT_05153___ 432 TGCCGGGAACCCAGAGCTGCTTATACTTGATGAACCGACAGTCGGCATGG 481
||||||..|.|||||.|||.|.||..||||.|||||.||.||||||||||
BL00204___yvf 432 TGCCGGCGATCCAGAACTGATGATCTTTGACGAACCCACGGTCGGCATGG 481
BSNT_05153___ 482 A---CACTTCATCAAGACACCGATTCTGGCAGACCATTCA--CGGACTGT 526
| |||| ||||||.||||.||.|||||.||..|||| || ||..
BL00204___yvf 482 ATATCACT---TCAAGAAACCGCTTTTGGCAAACGGTTCAATCG--CTCG 526
BSNT_05153___ 527 CGGACCAAGGAAAAACAATTATTTTTTCAACTCATTATTTACAGGAAGCA 576
|.||.|||||||||||.||.||||||||.||.||.||.||||||||||||
BL00204___yvf 527 CAGAGCAAGGAAAAACGATCATTTTTTCTACACACTACTTACAGGAAGCA 576
BSNT_05153___ 577 GACGATGCCGCACAGCGAATCCTATTTTTTACTGAAGGACAGCTTGTTGC 626
||.||||||||.||.||||||.|..|.||||..||.||..||.|.||.||
BL00204___yvf 577 GATGATGCCGCGCAACGAATCTTGCTGTTTAAAGACGGCAAGATAGTAGC 626
BSNT_05153___ 627 AGACGGCTCACCAATGCAAATCCGCTCAAGAAT-TCAAAAACAGTCTGTT 675
.||.||..|.||..|.|||||....|||||||| || .||.||.||.|||
BL00204___yvf 627 TGATGGAACGCCGCTCCAAATAAAATCAAGAATATC-GAAGCATTCGGTT 675
BSNT_05153___ 676 TCCTTTACGCTTCATTCAAGTGAA---TCAGTGGA-AAGACTGTCTTGTC 721
||.||||...||.||.| .||| |||.|.|| ||| ||||.|...|
BL00204___yvf 676 TCATTTATAGTTGATCC---GGAACAGTCACTCGAGAAG-CTGTATCAGC 721
BSNT_05153___ 722 ACCCGGAAGTCG-AGAGAGTGATCCACGAGCATGAGAGAACC------AT 764
||||.|||..|| |.|||.|..|| |.| .|.|.|||| |
BL00204___yvf 722 ACCCAGAAACCGAACAGATTTTTC-----GTA-AAAACAACCGGGTTTA- 764
BSNT_05153___ 765 CATCCAGACATCAAATACAGACAAAGTGTTGGCGCTGATCTTTC-AAGAA 813
||||.|.||..|.|||||.||||||.|..|||..||.|| |||| .||||
BL00204___yvf 765 CATCGACACGGCCAATACGGACAAAATACTGGAACTCAT-TTTCTCAGAA 813
BSNT_05153___ 814 AACATACATGCACGG-------GATATTCGAATTGAGCAAGCAACGCTCG 856
||.|| ||| |||||||.||||||||..|.||..||||
BL00204___yvf 814 AAGAT-------CGGCGCTTATGATATTCAAATTGAGCGCGGAAATCTCG 856
BSNT_05153___ 857 ATGAGGCATTTCGCCAGCTGGCTGAC-GGCAACAGGGAGGCGATGTGA 903
|.|||||||||||||| |||||| .||| |.||||.||| ||.|
BL00204___yvf 857 AAGAGGCATTTCGCCA----GCTGACAAGCA--AAGGAGACGA-GTAA 897
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.