Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06103 and BL00182

See Amino acid alignment / Visit BSNT_06103 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:07
# Commandline: needle
#    -asequence dna-align/BSNT_06103___iolR.1.5803.seq
#    -bsequence dna-align/BL00182___iolR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06103___iolR-BL00182___iolR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06103___iolR-BL00182___iolR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06103___iolR
# 2: BL00182___iolR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 774
# Identity:     577/774 (74.5%)
# Similarity:   577/774 (74.5%)
# Gaps:          27/774 ( 3.5%)
# Score: 2120.0
# 
#
#=======================================

BSNT_06103___      1 ATGAAACTGATGCGGATTCAGGAAATGGAGGAGTACATTTTATCGCATGG     50
                     |||||..|.|||||||||.|.||||||||.||.||.|||||..|..||||
BL00182___iol      1 ATGAAGTTAATGCGGATTAAAGAAATGGAAGATTATATTTTGACCAATGG     50

BSNT_06103___     51 CACTGTTTC-CTTAGATGAGCTGTGCCAGGTGTTCAATGTCTCCAAAAAC     99
                     |||.||||| ||| |||||.||.||||||||.||.|||||.||.||||||
BL00182___iol     51 CACCGTTTCGCTT-GATGAACTATGCCAGGTCTTTAATGTTTCAAAAAAC     99

BSNT_06103___    100 ACAGTCAGACGTGATATCAACAAGCTAACAGAAAAGGGTGCGATTGAAAA    149
                     ||.||||||||.||.||.||||||||.||.||.||.||.|..||..||||
BL00182___iol    100 ACGGTCAGACGCGACATTAACAAGCTGACCGAGAAAGGAGTTATAAAAAA    149

BSNT_06103___    150 AGTATACGGCGGCGTAACATCTATTGAAAAAACCGCATTAGTTCCTTTTG    199
                     |||.|||||||||||||||.|.||.||||||||.||.||..|.|||||||
BL00182___iol    150 AGTCTACGGCGGCGTAACAGCGATCGAAAAAACGGCCTTGATCCCTTTTG    199

BSNT_06103___    200 AAAATCGCACCATTCAGCACCAGGATGAAAAAACAAAAATCGCCCATTAT    249
                     ||||..|.||||||||..||.||||||..||.|||||||||||.|..|||
BL00182___iol    200 AAAACAGAACCATTCAAAACAAGGATGCCAAGACAAAAATCGCGCGCTAT    249

BSNT_06103___    250 GCTTCCCGATTTATTGAAGATCACGATTTGGTCTTCATTGATTCAGGAAC    299
                     |||||.||.|||||||||||.||.||..||.|.||.||||||||.||.||
BL00182___iol    250 GCTTCACGCTTTATTGAAGACCATGACCTGATTTTTATTGATTCCGGCAC    299

BSNT_06103___    300 GACGACAAAGTCTATTCTTGATACGCTTGATCCAGCCAAAAATGTCACCA    349
                     .|||||....||.||..|.||.||.|||||||||...||||||||.|||.
BL00182___iol    300 AACGACCCGATCCATATTGGAAACTCTTGATCCAAATAAAAATGTAACCG    349

BSNT_06103___    350 TCTTAACCAACAGTTTAGACATTATCAATGCGGCGTCAGCATTGAAGAAT    399
                     |.|||||.|||||..|.|||||||||||.||.||..||||..||.|.|||
BL00182___iol    350 TTTTAACGAACAGCCTCGACATTATCAACGCTGCTGCAGCGATGCAAAAT    399

BSNT_06103___    400 ATCAACTTAATCATTATCGGAAACAACTATAAGAGAAAAACCCGCTCCTT    449
                     ||.|||||.|||||.|||||.|.||||||.||..|.|||||.|..|||||
BL00182___iol    400 ATAAACTTGATCATCATCGGCAGCAACTACAAACGGAAAACGCAGTCCTT    449

BSNT_06103___    450 TGTCGGCATGGACGACCCGGCTATGCTTGATAAGTACAATATCAACAAAG    499
                     .|||||||||||.||.||||..|.|||.|||||.||.|||||.||.||||
BL00182___iol    450 CGTCGGCATGGATGATCCGGGAACGCTGGATAAATATAATATTAATAAAG    499

BSNT_06103___    500 CCTTTATGTCCGCTACCGGAACGACGCTGACACACGGATTGACCAATTCG    549
                     |.||.|||||.||.|||||..|.||.||.||.||.|||.||||.||.||.
BL00182___iol    500 CTTTCATGTCGGCAACCGGCGCAACACTTACCCATGGACTGACAAACTCC    549

BSNT_06103___    550 GATCTGCTGGAGTATGAAATTAAAAAGAGGATTTCAGAAAAAGCAAAAGA    599
                     ||||||||.||.||||||||||||||||..||.||.||||||||||||.|
BL00182___iol    550 GATCTGCTTGAATATGAAATTAAAAAGAAAATATCCGAAAAAGCAAAACA    599

BSNT_06103___    600 AGTGTATCTATTGGCTGACCATTCTAAATTCGGAAAATCAACGCTTCTGA    649
                     |||.|||.|..||||.||||||||.||||||||.||.||.||.||.||||
BL00182___iol    600 AGTATATTTGCTGGCCGACCATTCCAAATTCGGGAAGTCGACCCTGCTGA    649

BSNT_06103___    650 CGTATGCGCCGTTTGACAGGCTGCATTGC-----ATTGTGACCTCTCAGC    694
                     ||||.||||||||||||||     |||||     ||.||.||.||||||.
BL00182___iol    650 CGTACGCGCCGTTTGACAG-----ATTGCACGCGATCGTCACATCTCAGG    694

BSNT_06103___    695 CATTAGACGACGAGTA-CACGCAGTACTGCAATGA--GCATCAAATCGGC    741
                     |..|.||.||.||.|| |||| .||||||.||.||  |||  ||||.|..
BL00182___iol    695 CGCTTGATGAGGAATATCACG-TGTACTGTAAAGATCGCA--AAATTGAA    741

BSNT_06103___    742 ATTCATCTGGCCTAA---------    756
                     ||.|||.||||..||         
BL00182___iol    742 ATCCATTTGGCAAAACATGTATAG    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06103 and BL00182

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
