Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04573 and BL00172

See Amino acid alignment / Visit BSNT_04573 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:43
# Commandline: needle
#    -asequence dna-align/BSNT_04573___yubF.1.5803.seq
#    -bsequence dna-align/BL00172___yubF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04573___yubF-BL00172___yubF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04573___yubF-BL00172___yubF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04573___yubF
# 2: BL00172___yubF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 270
# Identity:     195/270 (72.2%)
# Similarity:   195/270 (72.2%)
# Gaps:          15/270 ( 5.6%)
# Score: 711.5
# 
#
#=======================================

BSNT_04573___      1 GTGCAGAAATATAGACGCAGAAACACGGTTGCCTTTACAGTATTAGCTTA     50
                     .||||.|||||.|||.|.||||||||....||||||||.||..|..|.||
BL00172___yub      1 ATGCATAAATACAGAAGAAGAAACACAACGGCCTTTACGGTTATGTCATA     50

BSNT_04573___     51 TTTTACTTTTTTTGCGGGAGTATTTTTGTTTAGTATCGGACTCTATAATG    100
                     |||.||.|||||.||||||||.|||||.|||.|||||||.||.||.||||
BL00172___yub     51 TTTCACATTTTTCGCGGGAGTCTTTTTATTTGGTATCGGGCTATACAATG    100

BSNT_04573___    101 CTGATAACCTGGAACTCAATGAAAAAGGTTATTACATCGCTGTTATGATA    150
                     |.||.||.|||.|.||||||||||||||.||||||||.||.||.|||||.
BL00172___yub    101 CGGACAATCTGCAGCTCAATGAAAAAGGCTATTACATAGCCGTGATGATT    150

BSNT_04573___    151 CTTGTAGCAGTTGGTGCGATTCTTACACAAAAAGTGACCCGTGATAATGC    200
                     .|.||.||.||.||.||||||.|.||.||.||||||||..|.||.|||||
BL00172___yub    151 TTAGTGGCGGTCGGCGCGATTTTGACCCAGAAAGTGACGAGAGACAATGC    200

BSNT_04573___    201 GGAGGATAACGAAATCATCGCGGAACAGGAAAAAAGACAAAATCAATCTC    250
                     .|||||.||.||||||||.|||||.|||||.|.||||||.|||...||  
BL00172___yub    201 CGAGGACAATGAAATCATTGCGGAGCAGGAGAGAAGACAGAATTTGTC--    248

BSNT_04573___    251 ATATCG------AATCATAA    264
                      ||.||      ||      
BL00172___yub    249 -TAGCGGCGAGTAA------    261


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.