Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05106 and BL00168
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:13
# Commandline: needle
# -asequence dna-align/BSNT_05106___yvaQ.1.5803.seq
# -bsequence dna-align/BL00168___yvaQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05106___yvaQ-BL00168___yvaQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05106___yvaQ-BL00168___yvaQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05106___yvaQ
# 2: BL00168___yvaQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2029
# Identity: 1018/2029 (50.2%)
# Similarity: 1018/2029 (50.2%)
# Gaps: 650/2029 (32.0%)
# Score: 2115.5
#
#
#=======================================
BSNT_05106___ 1 --------------ATGCGACTGACGATTTC--------CCGCAAATTCA 28
||| || ||.||.|| |.||||||.|.
BL00168___yva 1 GTGAAAAGCCCAAGATG-GA---ACAATATCACAATCGGCGGCAAATACG 46
BSNT_05106___ 29 GCCTGGTATTTTTGACACTGATCCTGATCAATTTACTTGTAGGCGGAATA 78
||.| |||||| || |..|||| .||.||
BL00168___yva 47 GCAT--TATTTT-----CT--TTGTGAT--GTTAAC-------------- 71
BSNT_05106___ 79 GGCGTTCTTAATATGCAG---------CATA---TCATTCAAAAAA---- 112
.|||||.||||.|| |.| |||| ||..|.||||.|
BL00168___yva 72 AGCGTTTTTAACAT-CCGTTTTGATTACATATGGTCTGTTAAAAGATACG 120
BSNT_05106___ 113 ------------CAG---ATGAAATCAACACAAAATGGATTGACGG---- 143
||| |.||||||.| ||||||.| ||||
BL00168___yva 121 AGCCAGACGGTTCAGGATACGAAATCGA---AAAATGAA---ACGGCCGT 164
BSNT_05106___ 144 -----CATCAAAG-----------AAATCACTTCAATTAATTATGTAACC 177
|..||||| |.|||| ||.|||.|||.|
BL00168___yva 165 TCAGTCGGCAAAGCTGATGTCCCTATATCA----AAATAAATATTT---- 206
BSNT_05106___ 178 GAGCACCT------GT-CTTC-TAAA----------GAAAAG------GA 203
||||.| || |.|| |||| |||||| ||
BL00168___yva 207 --GCACATTCCGGAGTACATCATAAACGCCCAGGATGAAAAGCTGACCGA 254
BSNT_05106___ 204 CTTTCTG--------------ATTT----ATACAGACAAAA----GCAAA 231
.|.|.|| |||| ||||.|.||||| |.|||
BL00168___yva 255 TTATATGAAGTACAGCCAGGAATTTGCCGATACGGCCAAAAAGCTGAAAA 304
BSNT_05106___ 232 A-----TGGATACACTTGATCA---AGAAATG---AATCAAATCATGGA- 269
| ||.||.|...|||.|| .||.||| .||||||||||.||
BL00168___yva 305 AAGAGCTGCATTCGGATGAGCAGCTTGACATGTTCGATCAAATCATTGAA 354
BSNT_05106___ 270 ---AGTCATTAACCAAAAGCTCGATAACTACGAAAAAACGATCTCCACTG 316
|.|||||.| ||.|||.|.||| .|.|.|
BL00168___yva 355 AACAATCATTCA-------CTGGATGAGTAC---------TTTTTC---- 384
BSNT_05106___ 317 ATAAAGAGCAGAAACTGTT-----CGAGCAGCTTCAAACTGAAGTGAATA 361
||| ||||.|||| ||.||||| ||.|.||.|
BL00168___yva 385 ------AGC-GAAATTGTTCCCAACGTGCAGC---------AAATCAACA 418
BSNT_05106___ 362 CCTATATGGATATT------CATGCGCAAATTATCGAAAGCGGCCGCACG 405
||.| ||.||| |.|.|..||| ||||||
BL00168___yva 419 CCGA----GAAATTTTTAACCCTTCAGAAA------AAAGCG-------- 450
BSNT_05106___ 406 AATGACATGGACAAAGTAAGAGGTTTATTGGTTCAGAC-------TGAGG 448
.|||.|..|| |||||| |||| |.|||
BL00168___yva 451 ---AACAAGCTCA----AAGAGG-----------AGACGATGACGTTAGG 482
BSNT_05106___ 449 C--CAGCTTTGAGGATA----TGAAAAAAACAATCACTCAGCTTGTTGAC 492
| .|||||..|.||.| ||..||||.||| ||||||.
BL00168___yva 483 CGAAAGCTTGAAAGAAAACGCTGTCAAAACCAA----------TGTTGAG 522
BSNT_05106___ 493 TTAAATCAAGAAGGCAGCAACACAGCGGTAAAAGAAACGAAGGCCGTCTA 542
|.||.|..|.|||.| |||..|| |.|.| |||||..||.|.||
BL00168___yva 523 TCAATTGGACAAGCC--CAATCCA-----ATATG--ACGAAAACCATTTA 563
BSNT_05106___ 543 TCATAAAG--GGCTCATTTACACTGCTTT----GCTTGTGGCAGCATCAA 586
|..|..|| |.||||.|| |||.||| |.|||||.|.||...|.
BL00168___yva 564 TATTTTAGGCGTCTCAATT---CTGATTTCGGCGATTGTGTCGGCGGGAC 610
BSNT_05106___ 587 TCCTCATCAGCATTTTCATCTGGCTTTATATCACGCGAAACAT-TGTAAA 635
||||.|| ||||.|||.|.||| |.|||| .||||.|| || ||
BL00168___yva 611 TCCTGAT---CATTGTCAGCCGGC---AGATCA--AGAAAAATCTG--AA 650
BSNT_05106___ 636 GCCTAT-----CATTCGCA--TGAAGGAATCTGCCAA---TCATATTGCC 675
||.|.| || ||| .||||.||| |||.|| ||||
BL00168___yva 651 GCGTGTTGTGGCA---GCAAGCGAAGAAAT-TGCAAAGGGTCAT------ 690
BSNT_05106___ 676 GAAGGCGATCTGTCGAACGATATGGAGCCGCT------CAACTCAAAAGA 719
|.|||| |.||.|||| || |||...||||||
BL00168___yva 691 ------------TTGAAC--TTTGAAGCC-CTTGATTACAAAGGAAAAGA 725
BSNT_05106___ 720 CGAGCTGGGTGATCTGAATGAAGCGCTGCAAAAAATGGTAGGGAATCT-- 767
.||..|.||..|.||.....|||||.||.|..|.||||..||.|..||
BL00168___yva 726 TGAAATCGGCCAGCTTTCGCAAGCGGTGAATCATATGGGCGGAAGCCTGC 775
BSNT_05106___ 768 GAGAGAT-ATTGTCGGATATTCTAAAGACATATCA--------AGCCGGG 808
|.||||| ||.|||| ||| ||||| |||||..
BL00168___yva 776 GTGAGATGATCGTCG---------AAG---TATCAGGGATCGCAGCCGAA 813
BSNT_05106___ 809 TTC---------TTTCTTCTTCACAGGTGCTTGCAACCGCAACGAATGAA 849
.|| |.|||| || |.||.|.|.||...||..|||.
BL00168___yva 814 GTCGACAAGCAATGTCTT----AC----GTTTACGAGCGTCTCGGCTGAT 855
BSNT_05106___ 850 ACAAGATCCGGCAGCAAACATATTACTG-AAACGATGAACGAAATGGCTG 898
...|||...||.|||.||||.||..||| .|.||.|||| |||.||||..
BL00168___yva 856 GTCAGAGAAGGAAGCGAACAGATCGCTGTCACCGTTGAA-GAATTGGCAA 904
BSNT_05106___ 899 A--GGGCTCTGAACAGCAGGCCCAAGACGCGGTGACGATTGCCGAATCGA 946
| ||||...|| |.|||||..|.||.||.|..|..|||.||||...||
BL00168___yva 905 ACGGGGCCACGA--ATCAGGCAAATGAAGCAGCTAATATTTCCGAGCAGA 952
BSNT_05106___ 947 TGAATGAGTTCACTGAAAGCATTGATAAAGCCTATAATCACGGCATCACC 996
...|.|||.||||.| .||| ||| .||.|||.
BL00168___yva 953 CACAGGAGCTCACCG--GGCA--------------AAT----TCAGCACG 982
BSNT_05106___ 997 ATCA--------GCGATACG----------TCTCAAA-----------AC 1017
.||| ||||.||| |.||||| ||
BL00168___yva 983 CTCATGAAAGCGGCGAAACGCTGGCCCGGTTTTCAAAAGAAGTGCTTCAC 1032
BSNT_05106___ 1018 GT---TCTCGAACTCGCGGTAAGCGGAAACGAAAATATGGCTACGTCATT 1064
|| |.|||| |||..||.||.|.||||||...|||||
BL00168___yva 1033 GTGTCTGTCGA------------CGGCGACAAACAGATGGCTCAATCATT 1070
BSNT_05106___ 1065 ACAGCAAATGAAAACCATCCATCATATTGTTGAAGAAGCCGTGCATAAAG 1114
..||||||||||...||||.|||||.|..|.||||.|.||||..|.||||
BL00168___yva 1071 GGAGCAAATGAATGTCATCAATCATGTAATGGAAGCATCCGTAGAAAAAG 1120
BSNT_05106___ 1115 TGAGATCACT---GGAACAG-CATTCTCAGGATATTAACAAGCTCGTTCA 1160
|.||....|| ||||||| || |||...||..|||||||.||..|
BL00168___yva 1121 TCAGTGTGCTGGAGGAACAGACA----CAGTCAATCCACAAGCTTGTCGA 1166
BSNT_05106___ 1161 AGTCATCAAC-GGAATTGCCGAGCAAACGAATTTGCTGTCCCTTAACGCC 1209
|.|.|| ||| ||.||.|||||.||||||||||||||..|..|.|||||.
BL00168___yva 1167 AATGAT-AACAGGTATGGCCGAACAAACGAATTTGCTCGCATTAAACGCG 1215
BSNT_05106___ 1210 GCGATTGAAGCTGCCCGCGCTGGAGAAAGCGGCAAAGGCTTCGCCGTTGT 1259
.|.||.|||||.||..|.||.||.||...|||.|||||.||.||||||||
BL00168___yva 1216 TCCATAGAAGCGGCAAGGGCCGGCGACGCCGGAAAAGGGTTTGCCGTTGT 1265
BSNT_05106___ 1260 GGCTGATGAAGTCAGAAAG-CTGGCTGACGGCGT------TTCTGATTCC 1302
.||.|..||.||.| |||| ||||||||.|..|| .|||| ||
BL00168___yva 1266 AGCCGGCGAGGTGA-AAAGACTGGCTGAAGAAGTGAAAAGCTCTG--TC- 1311
BSNT_05106___ 1303 GTGCAGGATATTACCCGGATTGTAGGCGGGACACAGCAGGAGATCCACAC 1352
.|||| .||.|||...||.|| ||| ||.|||.||.||
BL00168___yva 1312 -GGCAG--CATCACCGAAATCGT--------CAC----GGCGATTCAAAC 1346
BSNT_05106___ 1353 TG--TCATTACGTACTTGG------------AAAGCAGCTTTACAGAAGT 1388
.| .||| |.|.|.||| |||.|.|.|||.|||||||
BL00168___yva 1347 CGAAACAT--CTTCCATGGCCGGTGATTTAAAAACCGGTTTTTCAGAAGT 1394
BSNT_05106___ 1389 CGAAAAAGGAACGGAAAACCTGACAGACACCGGACAGGCTATGCGGCATA 1438
..|.||||||| ||||||.||..||.|| .|.|||
BL00168___yva 1395 TCATAAAGGAA---AAAACCAGATTGAGAC----------TTCCGG---- 1427
BSNT_05106___ 1439 TCAAGCAATCCGTCACTCATGTTGCAGACAGCATTAAGGAAGTAACGGA- 1487
|||..||| ||.||||.|..|..||..||||.|||||
BL00168___yva 1428 ---------CCGATACT----TTTCAGAGATTAAAAATAAAGTGACGGAT 1464
BSNT_05106___ 1488 -----TGGCC-TGAAGCAGTTAACA------AACCA--ATCG-ATT---- 1518
||||| ||.|.|.| ||| |..|| |||| |||
BL00168___yva 1465 ATGGCTGGCCGTGTATCGG---ACATTTCGGAGGCATTATCGCATTTCAG 1511
BSNT_05106___ 1519 ACTATCAATCAA-------------TCGATTGAAAATATCGCTTCTGTAT 1555
||..||||.|.| |||.|.||..|||||||..|..|.|
BL00168___yva 1512 ACGTTCAAGCGAGGAGATTAACGGCTCGGTCGAGCATATCGCGGCGATTT 1561
BSNT_05106___ 1556 CCGAAGAGTCGGCCGCCGGCATTGAAGAAACATTTTCA----------AT 1595
|||||||....||.|||||...|||||||| ||||| ||
BL00168___yva 1562 CCGAAGAAAGCGCGGCCGGTTCTGAAGAAA---TTTCAGCGTCCGTACAT 1608
BSNT_05106___ 1596 AACCGAGCAATCCGCCT--ATT----CGATGGA-------TCAAGTGCTT 1632
||||||..||.|| ||| .|||||| .|||| ||||
BL00168___yva 1609 ----GAGCAAAGCGGCTCGATTGAAAAGATGGACGAAAGCGCAAG-GCTT 1653
BSNT_05106___ 1633 CAAAATGCTGAAGA---GCTTGAGCAGCTGGCCAAGGAGCTTAATGAGAA 1679
| || |.||| |.||||.|.|.|| ||||.||.
BL00168___yva 1654 C----TG--GGAGAGATGGTTGAACGGATG------------AATGTGAT 1685
BSNT_05106___ 1680 GATGGGTCAGTTTACGATTTAA------- 1701
|| ||| .|||.|||||
BL00168___yva 1686 GA----TCA---AACGGTTTAAGCTCTGA 1707
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