Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00744 and BL00146

See Amino acid alignment / Visit BSNT_00744 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence dna-align/BSNT_00744___ydaP.1.5803.seq
#    -bsequence dna-align/BL00146___ydaP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00744___ydaP-BL00146___ydaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00744___ydaP-BL00146___ydaP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00744___ydaP
# 2: BL00146___ydaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1777
# Identity:    1272/1777 (71.6%)
# Similarity:  1272/1777 (71.6%)
# Gaps:         107/1777 ( 6.0%)
# Score: 4211.0
# 
#
#=======================================

BSNT_00744___      1 ATGGCACACAAAACTGCAGGACA---AGCAATGACAGAGCTGCTTGAGCA     47
                     ||||||.|||||||.||||||.|   |||  || ||||.|||||..||.|
BL00146___yda      1 ATGGCAAACAAAACCGCAGGAAAAATAGC--TG-CAGAACTGCTGAAGGA     47

BSNT_00744___     48 ATGGGGAGTTGATCATGTATACGGCATCCCCGGAGACAGTATAAATGAGT     97
                     ||||....||||||||||.||||||||.||.||.|||||..|.||.||.|
BL00146___yda     48 ATGGAACATTGATCATGTTTACGGCATGCCGGGCGACAGCGTCAACGAAT     97

BSNT_00744___     98 TTATCGAAGAATTAAGACACGAAAGAAATCA-ACTGAAGTTCATTCAAAC    146
                     |||||||.|||||..|.||.| ||||||.|| .||....|||||||||..
BL00146___yda     98 TTATCGATGAATTGCGGCATG-AAGAAAACAGCCTCCGCTTCATTCAAGT    146

BSNT_00744___    147 CCGCCACGAAGAGGTAGCGGCACTGGCAGCCGCGGCTGAAGCAAAACTCA    196
                     .||.||.|||||....||.||.||.||.|||||.||.||.|||||.||.|
BL00146___yda    147 GCGTCATGAAGAAACCGCTGCTCTCGCTGCCGCAGCCGATGCAAAGCTGA    196

BSNT_00744___    197 CCGGCAAGATCGGAGTCTGTCTGTCAATCGCAGGGCCGGGAGCGGTGCAC    246
                     |.|||||.|||||.|||||.||.||.||.||.||.|||||.||.||.||.
BL00146___yda    197 CAGGCAAAATCGGCGTCTGCCTTTCGATAGCGGGCCCGGGCGCCGTTCAT    246

BSNT_00744___    247 TTATTAAATGGTTTATATGATGCTAAAGCCGACGGCGCCCCTGTGCTGGC    296
                     .|..|.||.||.||.||||||||.|||||.|||||.||.||||||||.||
BL00146___yda    247 CTGCTGAACGGCTTGTATGATGCGAAAGCTGACGGGGCGCCTGTGCTTGC    296

BSNT_00744___    297 GATTGCAGGACAGGTTTCTTCTGGCGAAGTCGGACGGGACTATTTCCAGG    346
                     ||||.||||||||||.|||||.|..|||.||||..|.||.|||||.||||
BL00146___yda    297 GATTACAGGACAGGTGTCTTCGGATGAAATCGGGAGAGATTATTTTCAGG    346

BSNT_00744___    347 AGATTAAGCTGGAGCAAATGTTTGAGGACGTGGCCGTGTTCAA-CAGAGA    395
                     ||||....||.||.|.||||||||||||.|||||..|.||.|| ||| .|
BL00146___yda    347 AGATCGGTCTTGAACGAATGTTTGAGGATGTGGCTCTCTTTAATCAG-CA    395

BSNT_00744___    396 GGTACATAGCGCGGAATCACTTCCGGATCTCTTAAATCAGGCGATCAGGA    445
                     |||.|||...||.|||.|.||.||.|||||.||.||||||||||||.|.|
BL00146___yda    396 GGTGCATTCGGCTGAAGCCCTGCCAGATCTTTTGAATCAGGCGATCCGTA    445

BSNT_00744___    446 CCGCCTACAGCAAAAAAGGCGTTGCGGTATTGAGCGTGTCAGATGATTTG    495
                     ||||.||||||.|||||||.|..||.||..|||||||.||.||||||.||
BL00146___yda    446 CCGCATACAGCCAAAAAGGGGCCGCCGTTCTGAGCGTATCCGATGATCTG    495

BSNT_00744___    496 TTTGCGGAGAAAATCAAACGGGAGCCCGTGTATACTTCACCGGTGTATAT    545
                     |||||.||.||.||.||.|||.||||.||.|||||.||..||.|.|||||
BL00146___yda    496 TTTGCAGAAAAGATTAAGCGGAAGCCGGTTTATACGTCTGCGCTTTATAT    545

BSNT_00744___    546 TGAAGGGAACCTTGAACCGAA-AAAAGAACAGCTCGT-CACCTGCGCCCA    593
                     .|||||..|.||||||||||| ||||| .|||||..| || .||.||.||
BL00146___yda    546 CGAAGGCGATCTTGAACCGAAGAAAAG-CCAGCTGATGCA-GTGTGCACA    593

BSNT_00744___    594 ATATATTAATAACGCTAAGAAACCGATTATCCTGGCAGGGCAGGGAATGA    643
                     ||..|||||..|.||.||.||||||.|.||..|.||.||.|.||||||||
BL00146___yda    594 ATTGATTAACCAGGCAAAAAAACCGGTGATTTTAGCGGGACGGGGAATGA    643

BSNT_00744___    644 AAAAGGCGAAACGGGAGCTCTTAGAATTTGCGGACAAAGCCGCCGCTCCG    693
                     ||..|||||.|...|||||..|.||.|||||.||.|||||.|||||||||
BL00146___yda    644 AATCGGCGAGAGACGAGCTGCTCGAGTTTGCAGATAAAGCGGCCGCTCCG    693

BSNT_00744___    694 ATCGTTGTTACACTCCCGGCAAAAGGTGTCGTTCCCGATAAGCACCCGCA    743
                     |||.||||.||||||||.||.|||||.|||||.||.|||..|||||||||
BL00146___yda    694 ATCATTGTCACACTCCCAGCGAAAGGGGTCGTACCTGATCGGCACCCGCA    743

BSNT_00744___    744 TTTTCTCGGCAACCTCGGGCAGATCGGAACAAAGCCGGCTTACGAGGCAA    793
                     |.|.|||||.||||||||.||.|||||.||||||||.||.||.||.||.|
BL00146___yda    744 TATGCTCGGGAACCTCGGACACATCGGCACAAAGCCTGCATATGAAGCGA    793

BSNT_00744___    794 TGGAGGAATGTGATTTATTAATCATGCTCGGAACATCATTCCCGTACCGT    843
                     ||||||||.|.|||.|.||.||||||||.||.||.|||||.||||||||.
BL00146___yda    794 TGGAGGAAAGCGATCTGTTGATCATGCTGGGGACTTCATTTCCGTACCGC    843

BSNT_00744___    844 GATTATTTGCCTGATGACACGCCGGCAATCCAGCTCGATTCAGAC---CC    890
                     ||||||.||||.||.||..|.|||||.||.|||||.||  || ||   ||
BL00146___yda    844 GATTATCTGCCGGAAGATGCCCCGGCTATTCAGCTTGA--CA-ACAATCC    890

BSNT_00744___    891 GGCAAAAATCGGAAAACGGTATCCGGTGACAGCGGGCCTTGTCTGCGATT    940
                     |||.||||||||.|||||||||||.||.||.||.|||||||||||||||.
BL00146___yda    891 GGCGAAAATCGGCAAACGGTATCCTGTCACCGCCGGCCTTGTCTGCGATG    940

BSNT_00744___    941 C--------GGCTCTCGGTCTGCGCGAATTGACAGAGTA-TATTGAACGC    981
                     |        ||||.|        ..|||.|||| ||..| .||||||||.
BL00146___yda    941 CGAAAAAAGGGCTTT--------TTGAACTGAC-GAAAACAATTGAACGG    981

BSNT_00744___    982 AA--GGAAGACAGAAGATTCCT-GAATGCCTGCACAGAACATATGCAGCA   1028
                     ||  .||  ||.|...|||..| |||.| |||.|.|.||||||||..|.|
BL00146___yda    982 AAATCGA--ACCGCGCATTTTTGGAAAG-CTGTATACAACATATGAGGAA   1028

BSNT_00744___   1029 TTGGTGGAACGAAATTGAAAAAGATGAGACAGAGGCAACAACA---CCGC   1075
                     .|||.|..|.|||.||||||||||.||   |.|||.|.|.|||   ||||
BL00146___yda   1029 GTGGCGTTATGAAGTTGAAAAAGACGA---ACAGGTAGCGACAGAGCCGC   1075

BSNT_00744___   1076 TTAAACCTCAGCAGGTCGTGGCCCGTCTTCAGGAAGCGGCAGCCGATGAT   1125
                     |.||.|||||||||||..|.||..|.|||.||||.||||..||.||||||
BL00146___yda   1076 TGAAGCCTCAGCAGGTGATTGCAAGACTTGAGGACGCGGTCGCAGATGAT   1125

BSNT_00744___   1126 GCGGTGCTCTCTGTCGATGTCGGCACTGTGACAGTCTGGATGGCGCGTCA   1175
                     |||||.||.||.||.||.|||||.|.||||||.||.||||.||||||.||
BL00146___yda   1126 GCGGTTCTGTCCGTTGACGTCGGAAATGTGACGGTTTGGACGGCGCGCCA   1175

BSNT_00744___   1176 TTTCAAAATGAACGCGAACCAGGATTTCATCGTCTCCAGCTGGCTTGCGA   1225
                     |||.||.||||   |.||.||||||||..|..|.||.||||||||||..|
BL00146___yda   1176 TTTTAATATGA---CCAATCAGGATTTTTTGATATCAAGCTGGCTTGGCA   1222

BSNT_00744___   1226 CAATGGGCTGCGGCCTGCCGGGAGCGATCGCCGC-AAGCTTGTCCGAACC   1274
                     |.|||||.|||||.||.||.||.|||||..|.|| |||||| |||.|.||
BL00146___yda   1223 CGATGGGATGCGGTCTTCCAGGCGCGATTTCTGCAAAGCTT-TCCCATCC   1271

BSNT_00744___   1275 GGAACGCCAGGCGATCGCTGTCTGTGGTGACGGGGGATTTTC--CATGGT   1322
                     |||||||||||...|.||.||.||.||.|||||.||  ||||  ||| ||
BL00146___yda   1272 GGAACGCCAGGTTGTAGCCGTGTGCGGAGACGGCGG--TTTCAGCAT-GT   1318

BSNT_00744___   1323 C-ATGCAGGATCTTCCGACCGCTGTCAAATATAAGCTCCCGATCACAGTC   1371
                     | |||||.|||.|||||||.|||||||||||..|.||.||.||....||.
BL00146___yda   1319 CTATGCACGATTTTCCGACTGCTGTCAAATACGAACTGCCCATTGTTGTT   1368

BSNT_00744___   1372 GTCATTTTAAACAACGAAAATCTT-GGTATGATTGAGTACGAGCAGCAGG   1420
                     ||.||||||||.||..|.|| ||| ||.||||||.|.||.||.|||||||
BL00146___yda   1369 GTGATTTTAAATAATCAGAA-CTTGGGAATGATTCAATATGAACAGCAGG   1417

BSNT_00744___   1421 TCAAAGGCAATATCGACTATGTCACAAAACTTCAAAATGTCGACTATGCC   1470
                     ..|||||..||.|..|.||||..||....||..||||.|||||.||||||
BL00146___yda   1418 AAAAAGGGCATGTTAATTATGCGACGGCGCTCGAAAACGTCGATTATGCC   1467

BSNT_00744___   1471 GCATTTGCAGAAAGCTGCGGAGCAAAGGGCATCAAAGTGACTAAAGC-GG   1519
                     ...|||||.|||..||||||.|..||||||.|||..||||| ||||| .|
BL00146___yda   1468 AAGTTTGCCGAAGCCTGCGGCGGGAAGGGCTTCAGCGTGAC-AAAGCACG   1516

BSNT_00744___   1520 AAGAGCTTGCGCCGGCATTCCATG-------AGGCGC--TGCACTCTGAC   1560
                     ||||||||        ||||| ||       |.||||  |.||.||  ||
BL00146___yda   1517 AAGAGCTT--------ATTCC-TGCTTTGAAAAGCGCCTTTCATTC--AC   1555

BSNT_00744___   1561 CAA--CCGGTCG-TTGTGGATGT--CATGATTGGAAACGAACCGCCGCTT   1605
                     .||  || |||| ||.|.|||||  ||  ||||.|.||||||||||.|||
BL00146___yda   1556 AAAAGCC-GTCGATTATCGATGTGGCA--ATTGAAGACGAACCGCCTCTT   1602

BSNT_00744___   1606 CCTGGCAAA--ATCACATACGGGCAGGC--GAAAGGTTTTAGCAAATACA   1651
                     ||.||.|||  |||..||||  .||.||  .|||  .|..||||||||.|
BL00146___yda   1603 CCGGGAAAAATATCCTATAC--ACAAGCTGTAAA--CTACAGCAAATATA   1648

BSNT_00744___   1652 TGCT-GAAAAACTTCTTCGAAAACCAAAAAA--TTGAAATGCCGTCACTG   1698
                     ||.| .|||||||..|| ||.||  ||||.|  |.||..|||||.|.|||
BL00146___yda   1649 TGATCAAAAAACTAGTT-GAGAA--AAAAGAGCTCGACTTGCCGCCGCTG   1695

BSNT_00744___   1699 AAGAAAAGTTTGAAACGGTTATTTTAG   1725
                     ||.||||||||.|||.||.|.||||||
BL00146___yda   1696 AAAAAAAGTTTAAAAAGGATTTTTTAG   1722


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