Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00744 and BL00146
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:23
# Commandline: needle
# -asequence dna-align/BSNT_00744___ydaP.1.5803.seq
# -bsequence dna-align/BL00146___ydaP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00744___ydaP-BL00146___ydaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00744___ydaP-BL00146___ydaP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00744___ydaP
# 2: BL00146___ydaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1777
# Identity: 1272/1777 (71.6%)
# Similarity: 1272/1777 (71.6%)
# Gaps: 107/1777 ( 6.0%)
# Score: 4211.0
#
#
#=======================================
BSNT_00744___ 1 ATGGCACACAAAACTGCAGGACA---AGCAATGACAGAGCTGCTTGAGCA 47
||||||.|||||||.||||||.| ||| || ||||.|||||..||.|
BL00146___yda 1 ATGGCAAACAAAACCGCAGGAAAAATAGC--TG-CAGAACTGCTGAAGGA 47
BSNT_00744___ 48 ATGGGGAGTTGATCATGTATACGGCATCCCCGGAGACAGTATAAATGAGT 97
||||....||||||||||.||||||||.||.||.|||||..|.||.||.|
BL00146___yda 48 ATGGAACATTGATCATGTTTACGGCATGCCGGGCGACAGCGTCAACGAAT 97
BSNT_00744___ 98 TTATCGAAGAATTAAGACACGAAAGAAATCA-ACTGAAGTTCATTCAAAC 146
|||||||.|||||..|.||.| ||||||.|| .||....|||||||||..
BL00146___yda 98 TTATCGATGAATTGCGGCATG-AAGAAAACAGCCTCCGCTTCATTCAAGT 146
BSNT_00744___ 147 CCGCCACGAAGAGGTAGCGGCACTGGCAGCCGCGGCTGAAGCAAAACTCA 196
.||.||.|||||....||.||.||.||.|||||.||.||.|||||.||.|
BL00146___yda 147 GCGTCATGAAGAAACCGCTGCTCTCGCTGCCGCAGCCGATGCAAAGCTGA 196
BSNT_00744___ 197 CCGGCAAGATCGGAGTCTGTCTGTCAATCGCAGGGCCGGGAGCGGTGCAC 246
|.|||||.|||||.|||||.||.||.||.||.||.|||||.||.||.||.
BL00146___yda 197 CAGGCAAAATCGGCGTCTGCCTTTCGATAGCGGGCCCGGGCGCCGTTCAT 246
BSNT_00744___ 247 TTATTAAATGGTTTATATGATGCTAAAGCCGACGGCGCCCCTGTGCTGGC 296
.|..|.||.||.||.||||||||.|||||.|||||.||.||||||||.||
BL00146___yda 247 CTGCTGAACGGCTTGTATGATGCGAAAGCTGACGGGGCGCCTGTGCTTGC 296
BSNT_00744___ 297 GATTGCAGGACAGGTTTCTTCTGGCGAAGTCGGACGGGACTATTTCCAGG 346
||||.||||||||||.|||||.|..|||.||||..|.||.|||||.||||
BL00146___yda 297 GATTACAGGACAGGTGTCTTCGGATGAAATCGGGAGAGATTATTTTCAGG 346
BSNT_00744___ 347 AGATTAAGCTGGAGCAAATGTTTGAGGACGTGGCCGTGTTCAA-CAGAGA 395
||||....||.||.|.||||||||||||.|||||..|.||.|| ||| .|
BL00146___yda 347 AGATCGGTCTTGAACGAATGTTTGAGGATGTGGCTCTCTTTAATCAG-CA 395
BSNT_00744___ 396 GGTACATAGCGCGGAATCACTTCCGGATCTCTTAAATCAGGCGATCAGGA 445
|||.|||...||.|||.|.||.||.|||||.||.||||||||||||.|.|
BL00146___yda 396 GGTGCATTCGGCTGAAGCCCTGCCAGATCTTTTGAATCAGGCGATCCGTA 445
BSNT_00744___ 446 CCGCCTACAGCAAAAAAGGCGTTGCGGTATTGAGCGTGTCAGATGATTTG 495
||||.||||||.|||||||.|..||.||..|||||||.||.||||||.||
BL00146___yda 446 CCGCATACAGCCAAAAAGGGGCCGCCGTTCTGAGCGTATCCGATGATCTG 495
BSNT_00744___ 496 TTTGCGGAGAAAATCAAACGGGAGCCCGTGTATACTTCACCGGTGTATAT 545
|||||.||.||.||.||.|||.||||.||.|||||.||..||.|.|||||
BL00146___yda 496 TTTGCAGAAAAGATTAAGCGGAAGCCGGTTTATACGTCTGCGCTTTATAT 545
BSNT_00744___ 546 TGAAGGGAACCTTGAACCGAA-AAAAGAACAGCTCGT-CACCTGCGCCCA 593
.|||||..|.||||||||||| ||||| .|||||..| || .||.||.||
BL00146___yda 546 CGAAGGCGATCTTGAACCGAAGAAAAG-CCAGCTGATGCA-GTGTGCACA 593
BSNT_00744___ 594 ATATATTAATAACGCTAAGAAACCGATTATCCTGGCAGGGCAGGGAATGA 643
||..|||||..|.||.||.||||||.|.||..|.||.||.|.||||||||
BL00146___yda 594 ATTGATTAACCAGGCAAAAAAACCGGTGATTTTAGCGGGACGGGGAATGA 643
BSNT_00744___ 644 AAAAGGCGAAACGGGAGCTCTTAGAATTTGCGGACAAAGCCGCCGCTCCG 693
||..|||||.|...|||||..|.||.|||||.||.|||||.|||||||||
BL00146___yda 644 AATCGGCGAGAGACGAGCTGCTCGAGTTTGCAGATAAAGCGGCCGCTCCG 693
BSNT_00744___ 694 ATCGTTGTTACACTCCCGGCAAAAGGTGTCGTTCCCGATAAGCACCCGCA 743
|||.||||.||||||||.||.|||||.|||||.||.|||..|||||||||
BL00146___yda 694 ATCATTGTCACACTCCCAGCGAAAGGGGTCGTACCTGATCGGCACCCGCA 743
BSNT_00744___ 744 TTTTCTCGGCAACCTCGGGCAGATCGGAACAAAGCCGGCTTACGAGGCAA 793
|.|.|||||.||||||||.||.|||||.||||||||.||.||.||.||.|
BL00146___yda 744 TATGCTCGGGAACCTCGGACACATCGGCACAAAGCCTGCATATGAAGCGA 793
BSNT_00744___ 794 TGGAGGAATGTGATTTATTAATCATGCTCGGAACATCATTCCCGTACCGT 843
||||||||.|.|||.|.||.||||||||.||.||.|||||.||||||||.
BL00146___yda 794 TGGAGGAAAGCGATCTGTTGATCATGCTGGGGACTTCATTTCCGTACCGC 843
BSNT_00744___ 844 GATTATTTGCCTGATGACACGCCGGCAATCCAGCTCGATTCAGAC---CC 890
||||||.||||.||.||..|.|||||.||.|||||.|| || || ||
BL00146___yda 844 GATTATCTGCCGGAAGATGCCCCGGCTATTCAGCTTGA--CA-ACAATCC 890
BSNT_00744___ 891 GGCAAAAATCGGAAAACGGTATCCGGTGACAGCGGGCCTTGTCTGCGATT 940
|||.||||||||.|||||||||||.||.||.||.|||||||||||||||.
BL00146___yda 891 GGCGAAAATCGGCAAACGGTATCCTGTCACCGCCGGCCTTGTCTGCGATG 940
BSNT_00744___ 941 C--------GGCTCTCGGTCTGCGCGAATTGACAGAGTA-TATTGAACGC 981
| ||||.| ..|||.|||| ||..| .||||||||.
BL00146___yda 941 CGAAAAAAGGGCTTT--------TTGAACTGAC-GAAAACAATTGAACGG 981
BSNT_00744___ 982 AA--GGAAGACAGAAGATTCCT-GAATGCCTGCACAGAACATATGCAGCA 1028
|| .|| ||.|...|||..| |||.| |||.|.|.||||||||..|.|
BL00146___yda 982 AAATCGA--ACCGCGCATTTTTGGAAAG-CTGTATACAACATATGAGGAA 1028
BSNT_00744___ 1029 TTGGTGGAACGAAATTGAAAAAGATGAGACAGAGGCAACAACA---CCGC 1075
.|||.|..|.|||.||||||||||.|| |.|||.|.|.||| ||||
BL00146___yda 1029 GTGGCGTTATGAAGTTGAAAAAGACGA---ACAGGTAGCGACAGAGCCGC 1075
BSNT_00744___ 1076 TTAAACCTCAGCAGGTCGTGGCCCGTCTTCAGGAAGCGGCAGCCGATGAT 1125
|.||.|||||||||||..|.||..|.|||.||||.||||..||.||||||
BL00146___yda 1076 TGAAGCCTCAGCAGGTGATTGCAAGACTTGAGGACGCGGTCGCAGATGAT 1125
BSNT_00744___ 1126 GCGGTGCTCTCTGTCGATGTCGGCACTGTGACAGTCTGGATGGCGCGTCA 1175
|||||.||.||.||.||.|||||.|.||||||.||.||||.||||||.||
BL00146___yda 1126 GCGGTTCTGTCCGTTGACGTCGGAAATGTGACGGTTTGGACGGCGCGCCA 1175
BSNT_00744___ 1176 TTTCAAAATGAACGCGAACCAGGATTTCATCGTCTCCAGCTGGCTTGCGA 1225
|||.||.|||| |.||.||||||||..|..|.||.||||||||||..|
BL00146___yda 1176 TTTTAATATGA---CCAATCAGGATTTTTTGATATCAAGCTGGCTTGGCA 1222
BSNT_00744___ 1226 CAATGGGCTGCGGCCTGCCGGGAGCGATCGCCGC-AAGCTTGTCCGAACC 1274
|.|||||.|||||.||.||.||.|||||..|.|| |||||| |||.|.||
BL00146___yda 1223 CGATGGGATGCGGTCTTCCAGGCGCGATTTCTGCAAAGCTT-TCCCATCC 1271
BSNT_00744___ 1275 GGAACGCCAGGCGATCGCTGTCTGTGGTGACGGGGGATTTTC--CATGGT 1322
|||||||||||...|.||.||.||.||.|||||.|| |||| ||| ||
BL00146___yda 1272 GGAACGCCAGGTTGTAGCCGTGTGCGGAGACGGCGG--TTTCAGCAT-GT 1318
BSNT_00744___ 1323 C-ATGCAGGATCTTCCGACCGCTGTCAAATATAAGCTCCCGATCACAGTC 1371
| |||||.|||.|||||||.|||||||||||..|.||.||.||....||.
BL00146___yda 1319 CTATGCACGATTTTCCGACTGCTGTCAAATACGAACTGCCCATTGTTGTT 1368
BSNT_00744___ 1372 GTCATTTTAAACAACGAAAATCTT-GGTATGATTGAGTACGAGCAGCAGG 1420
||.||||||||.||..|.|| ||| ||.||||||.|.||.||.|||||||
BL00146___yda 1369 GTGATTTTAAATAATCAGAA-CTTGGGAATGATTCAATATGAACAGCAGG 1417
BSNT_00744___ 1421 TCAAAGGCAATATCGACTATGTCACAAAACTTCAAAATGTCGACTATGCC 1470
..|||||..||.|..|.||||..||....||..||||.|||||.||||||
BL00146___yda 1418 AAAAAGGGCATGTTAATTATGCGACGGCGCTCGAAAACGTCGATTATGCC 1467
BSNT_00744___ 1471 GCATTTGCAGAAAGCTGCGGAGCAAAGGGCATCAAAGTGACTAAAGC-GG 1519
...|||||.|||..||||||.|..||||||.|||..||||| ||||| .|
BL00146___yda 1468 AAGTTTGCCGAAGCCTGCGGCGGGAAGGGCTTCAGCGTGAC-AAAGCACG 1516
BSNT_00744___ 1520 AAGAGCTTGCGCCGGCATTCCATG-------AGGCGC--TGCACTCTGAC 1560
|||||||| ||||| || |.|||| |.||.|| ||
BL00146___yda 1517 AAGAGCTT--------ATTCC-TGCTTTGAAAAGCGCCTTTCATTC--AC 1555
BSNT_00744___ 1561 CAA--CCGGTCG-TTGTGGATGT--CATGATTGGAAACGAACCGCCGCTT 1605
.|| || |||| ||.|.||||| || ||||.|.||||||||||.|||
BL00146___yda 1556 AAAAGCC-GTCGATTATCGATGTGGCA--ATTGAAGACGAACCGCCTCTT 1602
BSNT_00744___ 1606 CCTGGCAAA--ATCACATACGGGCAGGC--GAAAGGTTTTAGCAAATACA 1651
||.||.||| |||..|||| .||.|| .||| .|..||||||||.|
BL00146___yda 1603 CCGGGAAAAATATCCTATAC--ACAAGCTGTAAA--CTACAGCAAATATA 1648
BSNT_00744___ 1652 TGCT-GAAAAACTTCTTCGAAAACCAAAAAA--TTGAAATGCCGTCACTG 1698
||.| .|||||||..|| ||.|| ||||.| |.||..|||||.|.|||
BL00146___yda 1649 TGATCAAAAAACTAGTT-GAGAA--AAAAGAGCTCGACTTGCCGCCGCTG 1695
BSNT_00744___ 1699 AAGAAAAGTTTGAAACGGTTATTTTAG 1725
||.||||||||.|||.||.|.||||||
BL00146___yda 1696 AAAAAAAGTTTAAAAAGGATTTTTTAG 1722
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