Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00736 and BL00141
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_00736___ydaF.1.5803.seq
# -bsequence dna-align/BL00141___ydaF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00736___ydaF-BL00141___ydaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00736___ydaF-BL00141___ydaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00736___ydaF
# 2: BL00141___ydaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 645
# Identity: 350/645 (54.3%)
# Similarity: 350/645 (54.3%)
# Gaps: 186/645 (28.8%)
# Score: 765.0
#
#
#=======================================
BSNT_00736___ 1 ATGTTCACTTGCAAGGTAAATGA---GCACATCACCATCCG-ATT----- 41
||||| |||||.| |.||.|.|..|||.| |||
BL00141___yda 1 ATGTT-----------TAAATTAATGGTACGTGATGATCTGTATTTAAAA 39
BSNT_00736___ 42 AT--TGGAGCCGAATGATGCGGAGCGGCTGGCCGAACTCATT-------- 81
|| |.||.||.||.||||| |.| ||||| ||
BL00141___yda 40 ATGCTCGAACCAAAAGATGC----CAG--GGCCG------TTTATATGCA 77
BSNT_00736___ 82 -ATCCAA-AATC---AGCA------GCGGCTCAGCCAGTGGCTGTTTTGG 120
|||||| |.|| || | |||| .|.||||||||||||
BL00141___yda 78 GATCCAACAGTCTAAAG-ATGTGTTGCGG------AAATGGCTGTTTTGG 120
BSNT_00736___ 121 G----CGGAAAATCCAAGCAGCGCTGACACGTACAG-------------A 153
| |||.| |.||||| ||||..|..|||.| |
BL00141___yda 121 GTGGACGGCA---CAAAGCA--GCTGGAAGATACCGAAGCTTTTATCGAA 165
BSNT_00736___ 154 GAAACCATCATTCCAGAA--TGGCGGCATCAGTATGCAGACCTGAACGGC 201
||||.||| ||| .|||.|| ||||.|| |||||.
BL00141___yda 166 GAAAGCAT-------GAAACAGGCCGC-------TGCAAAC---AACGGG 198
BSNT_00736___ 202 ATTGAGGCGGGGCTCCTTTATGACGGCA--GCCTAT---GCGGCATGATC 246
.||.|.||||| ..||||.|..|| |||.|| .|||.||.|||
BL00141___yda 199 TTTCAAGCGGG-----AATATGGCATCAAGGCCAATTTGCCGGAATCATC 243
BSNT_00736___ 247 AGCCTGCATAAC-----CTTGATCAAGTGAATCGAAAGGCTGAAATCGGA 291
.|.||.|||.|| ||.|||| ||.||.|.|.||...|||||.
BL00141___yda 244 GGACTCCATTACATTAACTGGATC-----AACCGCACGACTTCGATCGGC 288
BSNT_00736___ 292 TATTGGATTG------CTAAAGACTTTGAAGGGAAAGGCATTATTACAGC 335
||||||.|.| || |||.||||.|||||.||.||.||.|.
BL00141___yda 289 TATTGGCTCGGGGAGCCT------TTTCAAGGAAAAGGAATGATGACGGA 332
BSNT_00736___ 336 TGCCTGCCGAAAACTCATTACG-TATGCTTTT----GAAGA-GCTTGAGC 379
|||||||||....||.|| || ||.|||||| |||.| |.||
BL00141___yda 333 TGCCTGCCGGGCGCTGAT--CGATACGCTTTTCAGCGAATACGATT---- 376
BSNT_00736___ 380 TGAATCGTGTGGCGATCTGTGCGGCTGTCGGAAACGAAAAAAG-CAGAGC 428
|.||.||..|.|..|||.|.||.|||||...|||||.|||||| ||| ||
BL00141___yda 377 TAAACCGGATTGAAATCAGGGCCGCTGTTCAAAACGTAAAAAGCCAG-GC 425
BSNT_00736___ 429 GGTTCCGGAGCGGATCGGGTTTCTAGAGGAAGGAAGGGCACGGGATGGCT 478
..|||||||..||.|||| ||..|.|||.||| ||.||.||
BL00141___yda 426 CATTCCGGAAAGGCTCGG----CTTCACGAAAGAA-------GGCTGCCT 464
BSNT_00736___ 479 TATACGTAAA--CGGCAGGCATCACGACC---TCGTCTAC---------T 514
.|.|| || ||...|||..||||||| |||.|.|| |
BL00141___yda 465 CAGAC---AATGCGAGTGGCTCCACGACCACTTCGCCGACCATTTCGTAT 511
BSNT_00736___ 515 ACAG---TCTGTTAAAGCGTGAATGGGAAGG--CGAA--AAATAA 552
||.| |||| ||||.| ||||..| ||| ||.| ||||.|
BL00141___yda 512 ACGGGCTTCTG--AAAGAG-GAATATG-AGGCCCGCAGCAAATGA 552
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