Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05743 and BL00136
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:51
# Commandline: needle
# -asequence dna-align/BSNT_05743___thrZ.1.5803.seq
# -bsequence dna-align/BL00136___thrZ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05743___thrZ-BL00136___thrZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05743___thrZ-BL00136___thrZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05743___thrZ
# 2: BL00136___thrZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1967
# Identity: 1349/1967 (68.6%)
# Similarity: 1349/1967 (68.6%)
# Gaps: 97/1967 ( 4.9%)
# Score: 4302.5
#
#
#=======================================
BSNT_05743___ 1 ATGAGT---------AAACATGTACACATTCAGCTTCCGGACGGACAGAT 41
|||||| |.|.|.||.|| ||||| ..||.|||.|.|.
BL00136___thr 1 ATGAGTGAAAGTTTAATAAAAGTTCA-ATTCA-----AAGAAGGAAATAC 44
BSNT_05743___ 42 CAAGGAATATCCGAAAGGCATCACAATCAAAGAAGCG----GCTGGTTCT 87
.|||||||.||||||.||.||.|||||.||| || ||.|..||.
BL00136___thr 45 GAAGGAATTTCCGAAGGGGATAACAATAAAA----CGTATTGCAGAATCC 90
BSNT_05743___ 88 ATCAGTTCCAGTCTGCAAAAGAAGGCGGCTGCAGGTCAGGTCAATGGCAA 137
||.|||.|.|.|.|...||||.|.||.|.||.||...||||..|||..||
BL00136___thr 91 ATTAGTACAACTTTAAGAAAGCACGCTGTTGTAGCAAAGGTTGATGAAAA 140
BSNT_05743___ 138 GCTTGTTGATCTCAGTTTCAAGCTGGAGGAGGATGCTGAGCTTTCG--AT 185
..|.||.|||.|.||.|..|..||.||..||||||.|.|.| ||| ||
BL00136___thr 141 ATTCGTGGATTTAAGCTATACCCTTGACAAGGATGTTAAAC--TCGATAT 188
BSNT_05743___ 186 TGTTACACTCGATTCACAAGAAGGCTTGCAGGTGCTTCGCCACACATCAG 235
|.||||.||.|||||..|||||||.|||..||||.|..|.||.|||||..
BL00136___thr 189 TTTTACTCTAGATTCGAAAGAAGGTTTGTCGGTGTTAAGACATACATCCA 238
BSNT_05743___ 236 CGCATGTGCTGGCCCAAGCAGTAAAACGGCTGTACGGCGAAGTGTCA--T 283
|.|||.|..||||.||.||.||.|||.||||.||| .|.|||||.| |
BL00136___thr 239 CCCATATATTGGCACACGCTGTGAAAAGGCTTTAC--AGTAGTGTAAGTT 286
BSNT_05743___ 284 TGGGGGTAGGGCCTGTGATTGAAGACGGCTTCTACTATGACATGAAGCTG 333
||||..|.||.||.||.||||||||.|..||.|.||||||..||||.||.
BL00136___thr 287 TGGGTATTGGACCAGTAATTGAAGATGAGTTTTTCTATGATTTGAAACTT 336
BSNT_05743___ 334 GGGAAAAGCTTGGCATCAGGA-GACTTAGAGGCCATCGAAAAAGAAATGA 382
|...|.||.|||.| ||..|| ||.|||...||.||.|||...||.|||.
BL00136___thr 337 GAACACAGTTTGTC-TCCCGAGGATTTACTAGCAATTGAACGTGAGATGG 385
BSNT_05743___ 383 AAAACATAATAAATGAGAACCTTGAAATCAAACGTATAGAGGTTTCTTAC 432
||||.||.||.||.|||||..|.|||||.|||||.||.|..||.|||||.
BL00136___thr 386 AAAAGATTATTAAGGAGAATATAGAAATTAAACGAATTGTTGTCTCTTAT 435
BSNT_05743___ 433 GAAGAAGCTGATGAGCTGTTTGCACAAAAAGACGAGCGGCTCAAGCTTGA 482
||.||||||||..||.|.||||.|.||||..|.||.|...|.||||||||
BL00136___thr 436 GAGGAAGCTGAAAAGTTATTTGAAGAAAATAATGAACCATTAAAGCTTGA 485
BSNT_05743___ 483 GATTTTAA-AGGATATTCCGCGCGGGGAGGATATCACACTGTACCAGCAA 531
.||.|||| |||| |||||....||..|.||.||.||.||.|||||.||.
BL00136___thr 486 AATATTAAGAGGA-ATTCCAAAAGGCCAAGAAATAACTCTTTACCAACAG 534
BSNT_05743___ 532 GGGGAATTCGTTGACCTGTGCCGCGGGCCGCATCTTCCTTCTACAGGGAT 581
||.|||||..||||.||.||.|||||.||.||.|||||.||.||.||..|
BL00136___thr 535 GGAGAATTTATTGATCTTTGTCGCGGTCCACACCTTCCATCAACTGGTTT 584
BSNT_05743___ 582 GATCAAGGCGTTCAAACTGACAAGAGTATCAGGCGCTTATTGGCGCGGAG 631
.||.||.||.||.|||.|.||..|.|||||.||.|||||||||.|.|||.
BL00136___thr 585 CATTAAAGCATTTAAATTAACTCGTGTATCTGGAGCTTATTGGAGAGGAA 634
BSNT_05743___ 632 ACAGCAAAAATGAAGTCCTGCAGCGGGTGTACGGGGTTGCGTTTCAAAAG 681
|..||.||||.|||||.||.||.||.||.||.||.||.||.|||.|||||
BL00136___thr 635 ATCGCCAAAAAGAAGTTCTTCAACGAGTTTATGGAGTAGCTTTTAAAAAG 684
BSNT_05743___ 682 AAAAAAGATTTGGATGCGCACCTGCATATGCTGGAAGAAGCGGCAAAACG 731
|||.|.|||||..|||...|.||..||.|..|.|||.||||.|||||||.
BL00136___thr 685 AAAGACGATTTAAATGAATATCTATATTTTTTAGAACAAGCAGCAAAACA 734
BSNT_05743___ 732 AGACCATCGCAAGCTCGGCAAACAGTTAGGGCTGTTTATGTTTTCTGAAG 781
.||.|||||..||.|.||.|||||.||||...|.||||||||.||.||.|
BL00136___thr 735 TGATCATCGACAGTTAGGAAAACAATTAGATTTATTTATGTTCTCAGAGG 784
BSNT_05743___ 782 AAGCGCCGGGGATGCCGTTTTATTTGCCGAAAGGGCAGATTGTCCGCAAT 831
||||.|||||.|||||.|||||..|.||.|||||.||.|||||..|.||.
BL00136___thr 785 AAGCACCGGGAATGCCCTTTTACCTACCTAAAGGACAAATTGTTAGAAAA 834
BSNT_05743___ 832 GAGCTGGAACGCTTCTCGCGTGAACTGCAAACAAATGC--CGGCTACAAT 879
||..||||....||.||.||||||||.||||..||||| || |||.||
BL00136___thr 835 GAATTGGAGAAATTATCCCGTGAACTTCAAAATAATGCATCG--TACGAT 882
BSNT_05743___ 880 GAGGTGCGTACGCCGTTTATGATGAATCAGCGGTTATGGGAGCAGTCAGG 929
|||||.|.|||.|||||||||||||||.|.||.|||||||||.|.||.||
BL00136___thr 883 GAGGTCCATACACCGTTTATGATGAATTATCGATTATGGGAGAAATCCGG 932
BSNT_05743___ 930 CCATTGGGACCATTATCGCGACAATATGTACTTTTCAGAAGTGGATGATA 979
.||||||||.|||||.|..||.||||||||||||||.||.||.|||.|||
BL00136___thr 933 TCATTGGGATCATTACCAAGAAAATATGTACTTTTCTGAGGTCGATAATA 982
BSNT_05743___ 980 CAAGATTCGCAATGAAGCCGATGAATTGCCCCGGCCACATGCTCATCTTT 1029
|||..||.|||||.||.||.||||||||.||.||.||.|||||.||||||
BL00136___thr 983 CAAAGTTTGCAATCAAACCAATGAATTGTCCTGGACATATGCTAATCTTT 1032
BSNT_05743___ 1030 AAAAACAGCCTGTATTCTTATCGGGATCTGCCGATTCGCATGGCGGAATT 1079
|||||.|..||.||.||.|||||.|||||.||.|||||..|||||||||.
BL00136___thr 1033 AAAAATAATCTTTACTCCTATCGAGATCTACCTATTCGATTGGCGGAATA 1082
BSNT_05743___ 1080 CGGACAGGTGCATCGCCATGAATACAGCGGCGCTTTAAACGGAATGCTTC 1129
.|||||.||.|||||.|||||||..||.||..|.|||||||||.||||||
BL00136___thr 1083 TGGACAAGTTCATCGACATGAATTTAGTGGTTCATTAAACGGATTGCTTC 1132
BSNT_05743___ 1130 GCGTTCGGACGTTCTGTCAGGATGACGCCCATATTTTCGTTCGGGAGGAT 1179
|.||.||.||.||.||||||||||||||.||.||.||.|||||.||.|||
BL00136___thr 1133 GGGTACGCACATTTTGTCAGGATGACGCTCACATCTTTGTTCGAGAAGAT 1182
BSNT_05743___ 1180 CAGATTGAGAGTGAGATCAAAGAAGCGA-TTCGGCTGATTGATGAGGTAT 1228
||.|||||.|||||.|| .||||||..| |||...|.|||||..|.||.|
BL00136___thr 1183 CAAATTGAAAGTGAAAT-TAAGAAGGTATTTCATTTAATTGACCAAGTGT 1231
BSNT_05743___ 1229 ATCGGACATTTGGTTTCGAGTATTCAGTTGAGCTTTCGACTCGCCCGGAG 1278
||||.||..|||||||.|||||||||||.||.||.||.|||||.||.||.
BL00136___thr 1232 ATCGTACTATTGGTTTTGAGTATTCAGTGGAACTGTCTACTCGGCCAGAT 1281
BSNT_05743___ 1279 GATTCATTAGGCAATGA-CAGCCTTTGGGAAGCGTCGGAACGTGCCTTAG 1327
|||||||||||.|||.| || |||.|||||.|..||.||..|..|.|||.
BL00136___thr 1282 GATTCATTAGGAAATAATCA-CCTATGGGAGGTTTCTGAGGGATCATTAA 1330
BSNT_05743___ 1328 CACGCGTCCTTGAGGAGCTTGGC-CTCTCTTATGAGATCAATGAAGGCGA 1376
.|...||.|||||.|| .||.|| .||...|||.|..|.||||||||.||
BL00136___thr 1331 AAAATGTGCTTGACGA-TTTAGCAATCAAATATCAAGTTAATGAAGGTGA 1379
BSNT_05743___ 1377 TGGGGCGTTTTACGGGCCGAAAATTGATTTCCACATAAAAGATGCCCTGA 1426
||||||.||||||||.||.||||||||||||||.||.||||||||..|.|
BL00136___thr 1380 TGGGGCTTTTTACGGACCAAAAATTGATTTCCATATTAAAGATGCTTTAA 1429
BSNT_05743___ 1427 AACGGAGCCACCAATGCGCGACTATTCAGCTTGATTTTCAAATGCCGGAA 1476
|||||||.||.||.||||..||.||.||.|||||||||||.|||||.|||
BL00136___thr 1430 AACGGAGTCATCAGTGCGGAACAATCCAACTTGATTTTCAGATGCCTGAA 1479
BSNT_05743___ 1477 AAATTTGATTTAACATATATCAACGAACACAATGAAAAGGTTCGTCCCGT 1526
|||||||||||.||.|||||.||..|..|.||.|||||.||||||||.||
BL00136___thr 1480 AAATTTGATTTGACTTATATTAATCATAATAACGAAAAAGTTCGTCCTGT 1529
BSNT_05743___ 1527 TGTCATCCACAGAGCGGTTTTCGGCTCAATCGACCGTTTCTTCGGCATTT 1576
|||.||||||.|.||..||||.||.||.||.||.|||||.||.||.||||
BL00136___thr 1530 TGTTATCCACCGTGCTATTTTTGGTTCTATTGATCGTTTTTTTGGAATTT 1579
BSNT_05743___ 1577 TGATCGAGCATTACGGCGGG-GCTTTTCCAGTCTGGCTCGCACCGCTCCA 1625
|.||.||||||| ..||||| |.||||||.||.|||||.||.||..|.||
BL00136___thr 1580 TAATAGAGCATT-TTGCGGGTGTTTTTCCTGTTTGGCTTGCCCCTATTCA 1628
BSNT_05743___ 1626 GGTTCAAATCATACCGGTTTCTCACGTTCACTTAGACTATTGCAGAAAGG 1675
.||||||||.||.||..||||.||..|||||.|.||.|||||...|..|.
BL00136___thr 1629 AGTTCAAATTATTCCTATTTCACATATTCACCTGGAGTATTGTTTAGGGA 1678
BSNT_05743___ 1676 TGCAGGCGGAGCTGAAGCAGGCGGGGATAAGAGCCGGCATTGATGAGCGC 1725
|..||.||||.||.||.||....||||||||||.....|||.|.|||.|.
BL00136___thr 1679 TTAAGTCGGAACTCAAACAACACGGGATAAGAGTACAAATTAACGAGAGT 1728
BSNT_05743___ 1726 AATGAGAAGCTGGGCTATAAAATCAGAGAATCGCAGGTGCAGAAAATCCC 1775
|||.|.|||.|.||.||.|||||.||.|||.|.|||||.||.||||||||
BL00136___thr 1729 AATCAAAAGTTAGGGTACAAAATTAGGGAAGCACAGGTTCAAAAAATCCC 1778
BSNT_05743___ 1776 GTACGTGC--TGGTGCTTGGAGATCATGA-------------GGAGCAGG 1810
.|| |.| |.||..|.|||||..|||| ||||.|
BL00136___thr 1779 CTA--TACATTAGTAGTAGGAGACAATGAAATTAAAGAAAACGGAGTA-- 1824
BSNT_05743___ 1811 AGAATGCGGTA--AACGTCCGCCGATTCGG-ACATCAGCAGAGTGAACAC 1857
||| ||| ||.||..|..|| || |||.||..|.|.||
BL00136___thr 1825 --AAT---GTAAGAAAGTATGGAGA---GGAACAACAAAAAAATG----- 1861
BSNT_05743___ 1858 GTTCCTTTCCAAACTTTTAAAGATAAACTTGTCAAACAGGTGGAAAATCG 1907
.|||..||..||.||||.|||.|.|.|.||..|| |.||||..
BL00136___thr 1862 TTTCAATTGAAAGCTTTAAAAAAAATATTTTGCA--------GCAAATAA 1903
BSNT_05743___ 1908 AGGCATGTAG------- 1917
||.||.||||
BL00136___thr 1904 AGACACGTAGTGTCTAG 1920
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