Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00372 and BL00132

See Amino acid alignment / Visit BSNT_00372 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:02
# Commandline: needle
#    -asequence dna-align/BSNT_00372.1.5803.seq
#    -bsequence dna-align/BL00132___ybyB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00372-BL00132___ybyB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00372-BL00132___ybyB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00372
# 2: BL00132___ybyB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 295
# Identity:     162/295 (54.9%)
# Similarity:   162/295 (54.9%)
# Gaps:          92/295 (31.2%)
# Score: 464.0
# 
#
#=======================================

BSNT_00372         1 ATGAAACAAAAG---CTGTTACTTTCAGGTCTCGCTGTT-TCAACTGTCG     46
                     |||||.||||||   |||   .|.|||||||||||.||| ||    |.||
BL00132___yby      1 ATGAAGCAAAAGAATCTG---ATCTCAGGTCTCGCCGTTGTC----GCCG     43

BSNT_00372        47 GCATCACTTCTTATCTATTAAAAGACCCGTCAAATCGCCAAA-AGGCAAG     95
                     |..||||..|.|||.|..|.||||||    .|||    |||| ||.|||.
BL00132___yby     44 GAGTCACCGCATATATGCTCAAAGAC----GAAA----CAAACAGACAAA     85

BSNT_00372        96 A---GAATTCAT------------TCACAGCATGAAGAT-----------    119
                     |   |||.||.|            |||.||.|  |||||           
BL00132___yby     86 AACTGAAATCGTACTTGCAAAACGTCAAAGAA--AAGATCCCTTACTTTT    133

BSNT_00372       120 --GAAAATAACAAAACAGCCAGACATGGAAACGTTCCCAGTTGATAAAGC    167
                       |||||..|||          ||.|.||..|.|||||.|||||.|||||
BL00132___yby    134 CGGAAAAACACA----------ACGTAGATTCATTCCCGGTTGAAAAAGC    173

BSNT_00372       168 CGGCCACCCTGAC-CCGCAAGATA-----------------GTTTCAGAA    199
                     .||.||||| |.| |||||.||||                 ||.||.|||
BL00132___yby    174 AGGACACCC-GTCTCCGCATGATATCGAAGATAACAAAATGGTATCGGAA    222

BSNT_00372       200 GGCTCCATGTATCCCGTCCAATACTACGATGA-------------    231
                     ||.||||||||.||.||.|||||||||||.||             
BL00132___yby    223 GGATCCATGTACCCTGTTCAATACTACGACGAAAAGAAAAAATAG    267


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