Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06288 and BL00110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:15
# Commandline: needle
# -asequence dna-align/BSNT_06288___trmE.1.5803.seq
# -bsequence dna-align/BL00110___trmE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06288___trmE-BL00110___trmE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06288___trmE-BL00110___trmE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06288___trmE
# 2: BL00110___trmE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1405
# Identity: 1062/1405 (75.6%)
# Similarity: 1062/1405 (75.6%)
# Gaps: 50/1405 ( 3.6%)
# Score: 3961.0
#
#
#=======================================
BSNT_06288___ 1 ATGGATACAATTGCGGCAATTTCCACACCGATGGGAGAAGGCGCGATTGC 50
||||||||.||.||.||.|||||.||.||||||||||||||.||||||||
BL00110___trm 1 ATGGATACCATCGCTGCGATTTCAACGCCGATGGGAGAAGGGGCGATTGC 50
BSNT_06288___ 51 GATTGTACGGTTGAGCGGACCAGAAGCCATTCAAATCGCAGATAAAATTT 100
|||.||.|||.|||||||.||.||.||..||...|||||.||||||.|.|
BL00110___trm 51 GATCGTCCGGATGAGCGGCCCTGAGGCTCTTGCGATCGCCGATAAAGTGT 100
BSNT_06288___ 101 ATAAGGGACCGAAGGGGAAAACACTCAGCTCGGTCGAATCACATACGATT 150
||||.|||||....||.||||..||.||.||.|||||.||||||||||||
BL00110___trm 101 ATAAAGGACCTCGCGGAAAAAGGCTGAGTTCCGTCGATTCACATACGATT 150
BSNT_06288___ 151 CATTATGGTCATATCGTAGACAGACCTTCGG-ATCG-----TGTCGTTGA 194
.|.||.|||||||||||.|| |.||| |.|| .|||||.||
BL00110___trm 151 AACTACGGTCATATCGTTGA------TCCGGAAACGGAAAAAGTCGTGGA 194
BSNT_06288___ 195 GGAAGTAATGGTATCAGTGTTAAAAGCGCCGAGAACTTTTACACGGGAAG 244
.|||||.|||||.||.||..|.||||||||||.|||||||||.|||||||
BL00110___trm 195 AGAAGTCATGGTTTCGGTACTGAAAGCGCCGAAAACTTTTACGCGGGAAG 244
BSNT_06288___ 245 ATGTTATCGAGATAAACTGTCACGGGGGAATTGTGACTGTGAACCAAGTG 294
||.||.|.||.||.|||||.|||||.|||.||||||||||.|||||.|||
BL00110___trm 245 ATATTGTAGAAATCAACTGCCACGGCGGACTTGTGACTGTCAACCAGGTG 294
BSNT_06288___ 295 CTTCAGCTCGCATTGAGAGAGGGGGCGAGACTGGCAGAGCCTGGCGAATT 344
||||||||||..|||||||||||.|||.|.|||||.||.||.||.|||||
BL00110___trm 295 CTTCAGCTCGTTTTGAGAGAGGGAGCGCGTCTGGCGGAACCGGGAGAATT 344
BSNT_06288___ 345 TACGAAACGTGCGTTTTTAAACGGGCGAATCGATCTTTCACAGGCGGAAG 394
|||||||.|.||.|||||.|||||..|||||||||||||.|||||.||||
BL00110___trm 345 TACGAAAAGAGCCTTTTTGAACGGAAGAATCGATCTTTCCCAGGCTGAAG 394
BSNT_06288___ 395 CGGTTATGGACTTAATCAGAGCGAAAACGGACCGGGCAATGAACGTTGCT 444
|.||.|||||..|.|||||.||.|||||.||||||||||||||.||.||.
BL00110___trm 395 CTGTCATGGATCTCATCAGGGCCAAAACAGACCGGGCAATGAATGTGGCC 444
BSNT_06288___ 445 ATGAATCAAATGGAAGGGCGTCTTTCTGCTTTGGTGCGCCGTTTGCGCAG 494
||||||||.||||||||..|.||.|||.|..||.|....||.|||.|...
BL00110___trm 445 ATGAATCAGATGGAAGGAAGGCTGTCTTCACTGATCAAACGGTTGAGGGC 494
BSNT_06288___ 495 TGAGATTTTAGAAACACTGGCCCATGTTGAGGTGAATATCGATTATCCGG 544
.||||||.|.||||||.|||||||.|||||.||||||||.||.|||||||
BL00110___trm 495 CGAGATTCTTGAAACATTGGCCCACGTTGAAGTGAATATTGACTATCCGG 544
BSNT_06288___ 545 AGTATGATGATGTAGAGGAAATGACGCATCAGATTTTAGTCGAAAAGGCA 594
|.||.|||||.||.||.|||||||||||..||||..|..|.|||||.||.
BL00110___trm 545 AATACGATGACGTTGAAGAAATGACGCACAAGATGCTGATTGAAAAAGCG 594
BSNT_06288___ 595 ACCGCCGTGAAAAAGGAAATTGAGGCGCTGCTGAGGACTTCTGAGCAAGG 644
||....||.|||||||||||.|||||||||||||.||||||.|||||.||
BL00110___trm 595 ACAAAGGTCAAAAAGGAAATCGAGGCGCTGCTGACGACTTCAGAGCAGGG 644
BSNT_06288___ 645 AAAAATCTTGCGTGAAGGTCTTTCTACCGTCATTATCGGCCGGCCGAACG 694
.|||||.||..|.|||||..|.||.||.||.||.|||||.|||||.||.|
BL00110___trm 645 TAAAATATTAAGAGAAGGCATCTCGACAGTTATCATCGGGCGGCCCAATG 694
BSNT_06288___ 695 TAGGAAAATCATCTCTTCTGAACAGCCTCGTTCATGAGGCAAAAGCCATT 744
|.||.||.||.||.|||.|.|||||.|||||.||.|||.|||||||.||.
BL00110___trm 695 TCGGCAAGTCCTCGCTTTTAAACAGTCTCGTCCACGAGACAAAAGCGATC 744
BSNT_06288___ 745 GTAACCGATATTCCCGGAACGACACGGGATGTAATTGAGGAATACGTGAA 794
|||||.||||||||.||.|||||.||||||||.|||||.|||||.|||||
BL00110___trm 745 GTAACGGATATTCCGGGCACGACGCGGGATGTCATTGAAGAATATGTGAA 794
BSNT_06288___ 795 TGTAAGGGGCGTCCCGCTTCGTCTGGTTGATACAGCAGGTATTCGCGAAA 844
|||.||.|||||.|||||.|||||.||.||||||||.||.||.|||||.|
BL00110___trm 795 TGTCAGAGGCGTGCCGCTGCGTCTCGTCGATACAGCCGGGATCCGCGAGA 844
BSNT_06288___ 845 CAGAGGATATTGTTGAGCGAATCGGTGTTGAACGTTCTCGCCAGGTTCTA 894
|.||.||.||.||.|||||||||||.|||||||||||..|.|||||..||
BL00110___trm 845 CCGAAGACATCGTCGAGCGAATCGGCGTTGAACGTTCAAGACAGGTATTA 894
BSNT_06288___ 895 AAGGAAGCGGACCTGATTTTACTTGTGCTTAATTATAGTGAAGAGCTTTC 944
||.|||||.||..|||||||.|||||.||.|||||.||.||....|||||
BL00110___trm 895 AAAGAAGCAGATTTGATTTTGCTTGTCCTCAATTACAGCGAGTCCCTTTC 944
BSNT_06288___ 945 TGAAGAAGACGTGAAGCTTTTTGAAGC--CGTTGAGGGCATGGATGTTAT 992
.||.||||||.|.|||||.|||||||| || .||||.|||||..|.||
BL00110___trm 945 AGATGAAGACATCAAGCTCTTTGAAGCAACG--AAGGGAATGGACATCAT 992
BSNT_06288___ 993 CGTGATTTTGAATAAGACTGACCTTGAGGCGAAGATTGACACTGAACGTG 1042
|||.|||.|.||||||||.||.||||||...|||.||||...|||.||.|
BL00110___trm 993 CGTCATTGTCAATAAGACCGATCTTGAGCAAAAGCTTGATCTTGATCGGG 1042
BSNT_06288___ 1043 TCCGTGA----GCTTGCCAATGGACGTCCAGTTGTTACGACATCTCTT-T 1087
|.||.|| || ||..||| |..||.||.||.|||||.|| ||| |
BL00110___trm 1043 TTCGGGAATTGGC-TGGGAAT---CAGCCTGTCGTGACGACTTC-CTTAT 1087
BSNT_06288___ 1088 TAAAAGAGGAAGGCATCAATGATCTGGAAGAAGCGATTCAATCATTGTTC 1137
|||||||||||||.||..||||.|||||.|||||.||||||||..||||.
BL00110___trm 1088 TAAAAGAGGAAGGGATTGATGAGCTGGAGGAAGCCATTCAATCGCTGTTT 1137
BSNT_06288___ 1138 TACACGGGTGCCATTGAAAGCGGTGATCTGACTTATGTCAGCAACACACG 1187
|.|||.||.||.||.||.|||||.||..||||.|||||||||||.|||.|
BL00110___trm 1138 TTCACAGGCGCGATCGAGAGCGGCGACTTGACATATGTCAGCAATACAAG 1187
BSNT_06288___ 1188 TCACATCTCTATTTTACAGC------AAGCAAAACGCGCCAT---TGAAG 1228
.|| |||||.||.|| |.||.||.|||||||| |||
BL00110___trm 1188 GCA------TATTTCACTGCTGCATGAGGCGAAGCGCGCCATCACTGA-- 1229
BSNT_06288___ 1229 ATGCGCTT---AGCGGCATCGAACAGGATGTCCCGATCGACATGGTGCAA 1275
|||.| || |||||||||.|.|||||.||||||||.|||||.|||
BL00110___trm 1230 ---CGCATTGGAG-GGCATCGAAAACGATGTGCCGATCGATATGGTTCAA 1275
BSNT_06288___ 1276 ATTGACCTTACAAGATGCTGGGAGCTTTTAGGGGAAATCATTGGAGATTC 1325
|||||..|.||||||||||||||..||.|.|||||.||||||||.|||.|
BL00110___trm 1276 ATTGATTTAACAAGATGCTGGGAAGTTCTTGGGGAGATCATTGGCGATGC 1325
BSNT_06288___ 1326 TGTCCACGAAAGCTTAATTGATCAGCTCTTTTCACAATTCTGTTTAGGAA 1375
|||.||||||||..|.||.||.||||||||.||.|||||.||.|||||||
BL00110___trm 1326 TGTACACGAAAGTCTGATCGACCAGCTCTTCTCTCAATTTTGCTTAGGAA 1375
BSNT_06288___ 1376 AATAA 1380
|||||
BL00110___trm 1376 AATAA 1380
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