Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06287 and BL00109
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:14
# Commandline: needle
# -asequence dna-align/BSNT_06287___gidA.1.5803.seq
# -bsequence dna-align/BL00109___gidA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06287___gidA-BL00109___gidA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06287___gidA-BL00109___gidA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06287___gidA
# 2: BL00109___gidA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1900
# Identity: 1499/1900 (78.9%)
# Similarity: 1499/1900 (78.9%)
# Gaps: 26/1900 ( 1.4%)
# Score: 5915.5
#
#
#=======================================
BSNT_06287___ 1 ATGGGGTATGAAGCAGGCCAATACGATGTGATTGTGATTGGCGCCGGGCA 50
|||||.|||||||||||||||||.||.||..||||..|.||||||||.||
BL00109___gid 1 ATGGGCTATGAAGCAGGCCAATATGACGTCGTTGTCGTCGGCGCCGGACA 50
BSNT_06287___ 51 TGCCGGTGTTGAGGCTGCCCTCGCATCTGCACGCCAAGGCGCCAAAACGC 100
.|||||||||||.||.||.||.||.||.||..|.||||||||.|||||||
BL00109___gid 51 CGCCGGTGTTGAAGCGGCGCTGGCGTCAGCCAGACAAGGCGCAAAAACGC 100
BSNT_06287___ 101 TTGTCTTGACCATCAACCTAGATATGGTTGCATTTATGCCATGTAATCCG 150
|||||||.||.||.|||||.|||||||||||.||.|||||||||||.|||
BL00109___gid 101 TTGTCTTAACGATTAACCTTGATATGGTTGCTTTCATGCCATGTAACCCG 150
BSNT_06287___ 151 TCTGTCGGCGGCCCCGCAAAAGGGATTGTCGTCCGCGAAATTGACGCGCT 200
|||||||||||.||.||||||||.||.|||||||||||||||||||||||
BL00109___gid 151 TCTGTCGGCGGACCTGCAAAAGGAATCGTCGTCCGCGAAATTGACGCGCT 200
BSNT_06287___ 201 CGGCGGAGAAATGGGAAGAAACATCGATAAAACGCATATTCAAATGAGAA 250
||||||.|||||||..|.|||.||.||||||||||||||.||||||||..
BL00109___gid 201 CGGCGGGGAAATGGCTAAAAATATTGATAAAACGCATATCCAAATGAGGC 250
BSNT_06287___ 251 TGCTGAATACAGGAAAAGGTCCTGCGGTTCGTGCATTGCGTGCGCAAGCA 300
|..|.||||||||||||||.|||||.|||||.||..|.||.||.||.||.
BL00109___gid 251 TTTTAAATACAGGAAAAGGACCTGCCGTTCGGGCGCTTCGGGCTCAGGCT 300
BSNT_06287___ 301 GACAAATTCCAATATCAGCACGAAATGAAAAATACGCTTGAAAAAGAACC 350
||.|||||||||||||||||.|||||||||||.||.|||||.||.|||||
BL00109___gid 301 GATAAATTCCAATATCAGCATGAAATGAAAAAGACACTTGAGAATGAACC 350
BSNT_06287___ 351 AAACTTAACATTGCTGCAAGGAATTGTGGAGCGGCTGATCGTTGAAGACG 400
.||.||.||..|||||||||||||.||.||.||.||..|..|||||||||
BL00109___gid 351 GAATTTGACCATGCTGCAAGGAATGGTCGAACGCCTTCTTATTGAAGACG 400
BSNT_06287___ 401 GCGAATGCCGAGGCGTTATTACACAAACCGGCGCACATTATCGTGCGAAA 450
|.||||||||.||||||||.||.||.||.||.||..|.||.|||.|.||.
BL00109___gid 401 GGGAATGCCGGGGCGTTATAACCCAGACAGGGGCGGAGTACCGTTCTAAG 450
BSNT_06287___ 451 GCAGTTGTCATGACGACAGGGACATATTTAAGAGGACGTATCATTCTTGG 500
.|.|||||..|||||||.|||||||.|||.|||||....|||||||||||
BL00109___gid 451 ACCGTTGTTCTGACGACGGGGACATTTTTGAGAGGGAAAATCATTCTTGG 500
BSNT_06287___ 501 TGATCTGTCTTACTCAAGCGGCCCAAATAACCAGCAGCCTTCTATTAAGC 550
.||||||||.|||||.|||||.||.||.|||||||||||.||.||.||||
BL00109___gid 501 CGATCTGTCATACTCCAGCGGACCGAACAACCAGCAGCCGTCCATCAAGC 550
BSNT_06287___ 551 TTTCTGAGCATTTGGAGGAACTTGGTTTTGACCTTGTTCGTTTTAAAACA 600
|.|||||.|||.|.||.||.||.||.||||||||.||.||||||||||||
BL00109___gid 551 TGTCTGAACATCTTGAAGAGCTCGGCTTTGACCTCGTCCGTTTTAAAACA 600
BSNT_06287___ 601 GGTACGCCGCCTCGCGTTAAAAGCGACACGATTGATTACAGCAAAACGGA 650
||.||||||||.||.||.||.||..|..|.|||||.||||||||||||||
BL00109___gid 601 GGGACGCCGCCGCGGGTCAACAGTCATTCAATTGACTACAGCAAAACGGA 650
BSNT_06287___ 651 AATTCAGCCTGGTGACGATGTGCCTCGCGCTTTCTCATATGAAACAGTGG 700
|||.|||||.|||||.||.|||||.||.||.||.||.|||||.||.||||
BL00109___gid 651 AATCCAGCCCGGTGATGAAGTGCCGCGGGCCTTTTCGTATGAGACGGTGG 700
BSNT_06287___ 701 AATATATCACAGATCAGCTCCCTTGCTGGCTGACATATACAAGCCCTGAG 750
|||||||.|||||.|||||.||.||||||||.|||||||||||.||.||.
BL00109___gid 701 AATATATTACAGACCAGCTTCCATGCTGGCTCACATATACAAGTCCGGAA 750
BSNT_06287___ 751 ACACATGAGATTATTGACAGCAACCTGCACCGTTCACCGATGTATTCCGG 800
||.||.||.||.|||||||.|||..||||.||||||||||||||.|||||
BL00109___gid 751 ACGCACGAAATCATTGACAACAATTTGCATCGTTCACCGATGTACTCCGG 800
BSNT_06287___ 801 TATGATCAAAGGTACGGGCCCAAGATACTGCCCATCCATTGAAGATAAAG 850
.|||||||||||.|||||.||.|||||.|||||.||.||||||||.||.|
BL00109___gid 801 CATGATCAAAGGAACGGGACCGAGATATTGCCCGTCTATTGAAGACAAGG 850
BSNT_06287___ 851 TTGTACGATTTAATGATAAACCGCGTCACCAGATCTTCCTTGAGCCGGAA 900
|.||.||.|||||.||.||.|||.|.|||||.|||||.||||||||.|||
BL00109___gid 851 TCGTCCGCTTTAACGACAAGCCGAGACACCAAATCTTTCTTGAGCCTGAA 900
BSNT_06287___ 901 GGCAGAAATACACAGGAAGTCTATGTCCAAGGTTTATCTACAAGTCTTCC 950
||..|.||.||.|||||||||||||||||.||.||.||.|||||.|||||
BL00109___gid 901 GGGCGCAACACCCAGGAAGTCTATGTCCAGGGATTGTCGACAAGCCTTCC 950
BSNT_06287___ 951 AGAAGACGTACAGCAAAGAATGCTTGCAACGATTCCTGGACTTGAAAACG 1000
||||||.||.||||.||.|||||||.||||.|||||.||.|||||.||.|
BL00109___gid 951 AGAAGATGTGCAGCGAAAAATGCTTTCAACTATTCCCGGCCTTGAGAATG 1000
BSNT_06287___ 1001 TGCAAATGATGAGAGCCGGCTATGCGATCGAGTATGATGCAATCGTACCG 1050
|||||||||||.|.||.||.||||||||.||.||||||||.|||||||||
BL00109___gid 1001 TGCAAATGATGCGGGCGGGGTATGCGATTGAATATGATGCGATCGTACCG 1050
BSNT_06287___ 1051 ACACAGCTCTGGCCGACACTTGAAACAAAAAAAATCACAAACCTTTACAC 1100
||||||||.|||||||||.|.|||||.||||||||..|....||.|.|||
BL00109___gid 1051 ACACAGCTGTGGCCGACATTGGAAACGAAAAAAATTCCGGGACTCTTCAC 1100
BSNT_06287___ 1101 TGCAGGCCAAATTAACGGAACTTCCGGTTATGAAGAAGCTGCGGGACAAG 1150
.||.||.||.|||||||||||.||.||.|||||||||||.||.|||||.|
BL00109___gid 1101 AGCCGGACAGATTAACGGAACATCAGGCTATGAAGAAGCGGCCGGACAGG 1150
BSNT_06287___ 1151 GGATTATGGCGGGAATCAATGCAGGACGAAAAGCGCTTGGAAAAGAAGAA 1200
|.||||||||.||.||||||||.||.||.|||||||||||.||||||||.
BL00109___gid 1151 GAATTATGGCCGGTATCAATGCGGGCCGGAAAGCGCTTGGCAAAGAAGAG 1200
BSNT_06287___ 1201 GTGATTTTAAGCCGTTCTGACGCCTATATTGGTGTTCTGATTGATGACCT 1250
||.|||.|.|||||.||.|||||.|||||.||.||..||||.||.|||||
BL00109___gid 1201 GTCATTCTCAGCCGCTCAGACGCTTATATCGGCGTATTGATCGACGACCT 1250
BSNT_06287___ 1251 TGTGACAAAAGGTACCAATGAGCCATATCGTCTTTTGACATCACGTGCGG 1300
||||||||||||.||.||.||.|||||.||.||..||||.||.|||||.|
BL00109___gid 1251 TGTGACAAAAGGAACAAACGAACCATACCGCCTGCTGACTTCGCGTGCAG 1300
BSNT_06287___ 1301 AATACAGATTGCTGCTTCGCCATGACAATGCTGATTTGCGTCTGACAGAA 1350
|.|||||..||||.||.||.||.||||||||.||.|||||.|||||.||.
BL00109___gid 1301 AGTACAGGCTGCTCCTGCGTCACGACAATGCAGACTTGCGCCTGACCGAG 1350
BSNT_06287___ 1351 ATCGGACACCGCATTGGATTGATTTCTGATGAGCGCTAT-----GCGGCT 1395
|||||..|.|..||.||.|||||||||||.||..|.||| |
BL00109___gid 1351 ATCGGCTATCAGATCGGCTTGATTTCTGAAGAAAGATATCAAAAG----- 1395
BSNT_06287___ 1396 TTTGAGAAGAAAAAAGCGGCGATCGAGGCGGAGAAAAAACGTCTTCATTC 1445
|||.|..|||||||||||||.||.||.||.|||||||||||.||||||||
BL00109___gid 1396 TTTCAAGAGAAAAAAGCGGCCATTGAAGCAGAGAAAAAACGCCTTCATTC 1445
BSNT_06287___ 1446 TGTAATTATCAAGCCGTCTCCGGAAAATCAAGAATATATCCGTTCTCTTG 1495
|||.||||||||.|||.|...|||||||||.||||||||||||||.||.|
BL00109___gid 1446 TGTTATTATCAAACCGACAAAGGAAAATCAGGAATATATCCGTTCACTGG 1495
BSNT_06287___ 1496 GCGGAAGCGAATTGAAAGATGGAGTTCGCGGCACAGACTTGATGAAGCGT 1545
||||.|||||..|.|||||.||..||||||..||.|||.||||||||||.
BL00109___gid 1496 GCGGCAGCGAGCTCAAAGACGGCATTCGCGCGACCGACCTGATGAAGCGG 1545
BSNT_06287___ 1546 CCTGAAATGAACTATGAAACAGTCACAAAACTGGCGCCGCC------AGA 1589
|||||||||||.||||||||.|||||....||.|||||||| |.|
BL00109___gid 1546 CCTGAAATGAATTATGAAACCGTCACTGCTCTTGCGCCGCCTGAACAAAA 1595
BSNT_06287___ 1590 AGT-GCCAGTTCCTCAAGACGTGGCAGAACAAGTAGAAATCCAAGTGAAA 1638
||| |||.| .|||||.||.|||||.||.|||||.|||.|.||.
BL00109___gid 1596 AGTCGCCGG-------CGACGTTGCCGAACAGGTGGAAATTCAAATTAAG 1638
BSNT_06287___ 1639 TATGAAGGATATATTGAAAAATCTCTT-CAGCAAGTGGAAAAACTGAAGA 1687
||||||||||||||||||||.|| ||| |||||.||.||||||||.||||
BL00109___gid 1639 TATGAAGGATATATTGAAAAGTC-CTTGCAGCAGGTCGAAAAACTAAAGA 1687
BSNT_06287___ 1688 AGATGGAAAATAAAAAAATTCCAGATCGAATTGATTATGACGCAATTAAG 1737
|.||||||||||||||.|||||.||..||||.||.||||||||.||.||.
BL00109___gid 1688 AAATGGAAAATAAAAAGATTCCTGACAGAATCGACTATGACGCGATCAAA 1737
BSNT_06287___ 1738 GGGATTGCGACCGAGGCGCGTCAAAAACTGAAAAATGTACGGCCTTTGTC 1787
||.|||||.||.||.|||||.||||||.|||||.|.||..|.||..||||
BL00109___gid 1738 GGCATTGCAACGGAAGCGCGCCAAAAATTGAAAGAGGTCAGACCGCTGTC 1787
BSNT_06287___ 1788 TGTTGCCCAAGCTTCCCGCATTTCCGGTGTAAACCCGGCGGACATTTCAA 1837
|||.||.||.||.||.||.||||||||.||.||.||.||.||.|||||.|
BL00109___gid 1788 TGTCGCACAGGCCTCACGGATTTCCGGCGTCAATCCTGCTGATATTTCCA 1837
BSNT_06287___ 1838 TTCTATTGGTGTATTTAGAGCAGGGACGCATTGCGAAGATAGCCGAATAG 1887
|.||..|.||.|||||||||||||||||.|||||.|||.|.||.||||||
BL00109___gid 1838 TACTGCTCGTTTATTTAGAGCAGGGACGGATTGCCAAGGTTGCGGAATAG 1887
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