Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06277 and BL00102

See Amino acid alignment / Visit BSNT_06277 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:14
# Commandline: needle
#    -asequence dna-align/BSNT_06277___yyaD.1.5803.seq
#    -bsequence dna-align/BL00102___yyaD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06277___yyaD-BL00102___yyaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06277___yyaD-BL00102___yyaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06277___yyaD
# 2: BL00102___yyaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1045
# Identity:     738/1045 (70.6%)
# Similarity:   738/1045 (70.6%)
# Gaps:          59/1045 ( 5.6%)
# Score: 2451.5
# 
#
#=======================================

BSNT_06277___      1 GTGTTGTGGAGAGCCGGAATGAAGTGGATGCTGCTCATATTAGGGAGCCT     50
                        .|||||||||||||.||||||||||||||.||.||.|||||.|||.|
BL00102___yya      1 ---GTGTGGAGAGCCGGGATGAAGTGGATGCTTCTTATTTTAGGAAGCTT     47

BSNT_06277___     51 GATTGGGGCCGGATATGCGAGCGGTCAGGAGATATGGCAGTTTTTTGGGG    100
                     .||.||.||.||||||||...|||.|||||.|||||||||||||||||.|
BL00102___yya     48 AATAGGTGCGGGATATGCATCCGGCCAGGAAATATGGCAGTTTTTTGGTG     97

BSNT_06277___    101 CGGAAAGCGGACTTGCTATTGTGCTGTTTACAATTATGTTCATTTTCTCG    150
                     ..|||||||||||.|||||..||.|||||||.||.|||||||...|.||.
BL00102___yya     98 ATGAAAGCGGACTGGCTATCCTGTTGTTTACGATCATGTTCAGCCTGTCA    147

BSNT_06277___    151 TCTTATATTGTGATGAAAATCAGTTTT----AAAGTTCAATCCACTCATT    196
                     .|.||||||||||||||.|||||.|.|    |||    ||||....||||
BL00102___yya    148 ACCTATATTGTGATGAAGATCAGCTATGAACAAA----AATCAGAGCATT    193

BSNT_06277___    197 TTCTGCCGGTTCT-GGAGCATTTAATGGGGCC-ATGGCTGGCGAAAATTT    244
                     |||||||.||.|| |.|.|| |||||.||.|| || ||||||.|||.|.|
BL00102___yya    194 TTCTGCCTGTGCTCGAAACA-TTAATCGGTCCGAT-GCTGGCTAAAGTAT    241

BSNT_06277___    245 ATGATGTCCTCATCATTTTTTATTTGTTTTCGACGACTATGGTGATGATT    294
                     |.|||||.||.|||||..|.|||||||||.|||||||.||.|||||||||
BL00102___yya    242 ACGATGTGCTGATCATCCTGTATTTGTTTACGACGACGATTGTGATGATT    291

BSNT_06277___    295 GCCGGAGGCGGTGTGACCCTGCAAATGTACAAGCTT-------CCTTTCT    337
                     ||.||||||||.||.||.||||||||       |||       ||.||.|
BL00102___yya    292 GCAGGAGGCGGGGTAACGCTGCAAAT-------CTTTCATATCCCGTTTT    334

BSNT_06277___    338 GG--TGGGGAATCACGCTGATTTGTATTGTG-ACAGTGTGTTTGTTTTTG    384
                     ||  |||.|  |||...||.||||| ||.|| ||||.||..|||||||||
BL00102___yya    335 GGACTGGCG--TCATCTTGTTTTGT-TTATGCACAGGGTTGTTGTTTTTG    381

BSNT_06277___    385 TGGGATGTGAAAGGAATATTATCTATAAATAG-TATTTTGATTCCTG-TG    432
                     ||||...|.||.||.|||||.||..|.||||| ||.||  |.|||.| |.
BL00102___yya    382 TGGGGGCTCAATGGCATATTGTCCGTTAATAGCTACTT--AATCCCGATT    429

BSNT_06277___    433 TTAGTAGCGGGGCTTTTATATGCGCTGATCTCCTTTCAGAGCA-CACATC    481
                     ||.||.||||||||..|.|||||||||||.||.||||| |.|| |.||||
BL00102___yya    430 TTGGTGGCGGGGCTGCTGTATGCGCTGATTTCTTTTCA-AACAGCTCATC    478

BSNT_06277___    482 ACCATACGTGGACGATTGATTTGTCCCAGCAGTATAACTGGCCTGCGAGC    531
                     |.||..|||||..|.|..|.|||.|.||.||.||.|||||||||||..||
BL00102___yya    479 ATCAGCCGTGGCTGCTCAACTTGACTCATCAATACAACTGGCCTGCCGGC    528

BSNT_06277___    532 ATTACGTTTACCTCTTTAAACATCCTTTCAGTTGTTGCGATTTTATCCTC    581
                     ||..|.||.||.||..|.|||||..|.||.|||||.||..|.|||||..|
BL00102___yya    529 ATCGCATTCACTTCCCTGAACATATTATCTGTTGTCGCTGTATTATCTGC    578

BSNT_06277___    582 TGTTGGGAAAGAGATGAAAGGGCTCGGAGAAGCAAAAATCGCAAGTGTGG    631
                     .||.||.|||||||||||.|||.|||||||||||||.||.||.||..|..
BL00102___yya    579 GGTCGGCAAAGAGATGAAGGGGGTCGGAGAAGCAAAGATTGCCAGCATAT    628

BSNT_06277___    632 CAAGCGGTCTTATTTTTGGCGTGATCTCATTTGTTTATAATGAAACGTTG    681
                     .||||||.||..|.|||||.|..||.||||...|.||.|||||.||..|.
BL00102___yya    629 TAAGCGGCCTGGTGTTTGGGGCTATTTCATACATGTACAATGAGACCCTT    678

BSNT_06277___    682 GTGGAGCTGGCGGGCTCCCTTTCTCAGTTTGAAATACCGCTGTTTGCCGT    731
                     ||.|||||.||.||....||..|.||.|.||||||.||..|.||.||.||
BL00102___yya    679 GTAGAGCTTGCCGGTGAACTGGCCCATTATGAAATTCCTTTATTCGCGGT    728

BSNT_06277___    732 TCTGGAGGGTGCGCCTTATTTCC--TTTTTTTATGTATGACGGCGGTGCT    779
                     |.|||||||.||||||  |||||  |||||.|.|.|||||||||.||.||
BL00102___yya    729 TTTGGAGGGCGCGCCT--TTTCCGATTTTTATTTTTATGACGGCTGTACT    776

BSNT_06277___    780 GTGCCTGGCGATTTACACGACGACGGT----AGCAGGTTTGCTGGGGCTG    825
                     .|||.|.||.||.||.|||||||||.|    ||||    |.||.||.|||
BL00102___yya    777 TTGCGTCGCAATCTATACGACGACGATCTCGAGCA----TTCTCGGTCTG    822

BSNT_06277___    826 TCCAGCCGGCTGATGGCGTTTATTCATATGCCTAGATGGATGATTG---T    872
                     ||||||||..|..||.|.|||.|..|...|||.||||||.||||.|   |
BL00102___yya    823 TCCAGCCGTTTTCTGTCCTTTGTGAACTGGCCGAGATGGGTGATCGTCAT    872

BSNT_06277___    873 GTTGATTTTGTTAGTGTTAATGGTACCTTTTACTTCTTTCGGATTTTCTG    922
                     ..||.||.|.|   .|.|.||||..||||||||.||..||||||||||..
BL00102___yya    873 CCTGCTTCTCT---CGATCATGGCTCCTTTTACGTCAATCGGATTTTCAA    919

BSNT_06277___    923 ATTTGATCGCGTTCTTGTATCCGATATATGGGATGCTCAATTTGTATTTG    972
                     ||||.|||||.||.||.|||||.||.||.||..|..|.|||||.|||||.
BL00102___yya    920 ATTTAATCGCTTTTTTATATCCAATTTACGGATTATTGAATTTATATTTA    969

BSNT_06277___    973 TTAGTTTGTCTGCTCTTATATCCTATTTTGAGTAAATGGAAATAA   1017
                     ||.||...|.|..|..|||||||.|||||||||||||||||||||
BL00102___yya    970 TTGGTAAATATTTTACTATATCCGATTTTGAGTAAATGGAAATAA   1014


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06277 and BL00102

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
