Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00304 and BL00096
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_00304___ybaR.1.5803.seq
# -bsequence dna-align/BL00096___ybaR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00304___ybaR-BL00096___ybaR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00304___ybaR-BL00096___ybaR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00304___ybaR
# 2: BL00096___ybaR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1536
# Identity: 1001/1536 (65.2%)
# Similarity: 1001/1536 (65.2%)
# Gaps: 168/1536 (10.9%)
# Score: 3016.0
#
#
#=======================================
BSNT_00304___ 1 TTGAATGATAGTTTTACATTAAAACAGC-AATGGTTCGGCAATATCCGAA 49
|||||| |||..|||.|.|||.||| |||||||....|||.|.||..
BL00096___yba 1 TTGAAT----GTTAAACAATTAAATAGCGAATGGTTTTCTAATGTACGGG 46
BSNT_00304___ 50 AAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTAATTCCTGAAGCG 99
..||.||.|||.|.||.||..|.||.|||.|.||..|.|||||||||||.
BL00096___yba 47 GGGATATCCTTTCGGGTATCGTCGTAGCGCTTGCTCTCATTCCTGAAGCC 96
BSNT_00304___ 100 ATTGGCTTTTCTATTATAGCCGGTGTGGATCCGATGGTCGGTCTTTATGC 149
||.|..||.||.||.||.||.|||||.||.||||||||.|||.|.||.||
BL00096___yba 97 ATAGCGTTCTCCATCATTGCGGGTGTAGACCCGATGGTAGGTTTGTACGC 146
BSNT_00304___ 150 GTCATTTTGTATAGCCATTATTATTTCTATTTTTGGCGGCAGACCTGGC- 198
.||.||||||||.|||.||.|.|||||..||...||||||.|.|| |||
BL00096___yba 147 ATCTTTTTGTATCGCCGTTGTCATTTCCTTTACGGGCGGCCGTCC-GGCG 195
BSNT_00304___ 199 ATGATTTCAGCTGCGACAGGCTCAATGGCAGTCGTT--ATGGTGTCGCTG 246
|||||.|||||.|||||.||..|.||||| ||.|| ||||...|..||
BL00096___yba 196 ATGATATCAGCCGCGACCGGGGCGATGGC--TCTTTTGATGGGAACTTTG 243
BSNT_00304___ 247 GTTGCTGATCATGGGCTTCAGTATTTATTTGCGGCTACGATTTTGACAGG 296
||....|||||.||||||.|.|||||||||||.|||||||||||.||.||
BL00096___yba 244 GTCAGAGATCACGGGCTTGATTATTTATTTGCTGCTACGATTTTAACGGG 293
BSNT_00304___ 297 TATTATTCAGGTGAT-TTTAGGTATCAGT----AAAATTGCAAGATTAAT 341
.||.||.||..|.|| |||.|| || ||.|||||..|.||.||
BL00096___yba 294 AATCATCCAATTAATATTTGGG-----GTGCTGAAGATTGCGCGCTTTAT 338
BSNT_00304___ 342 GAAATTCATCCCGCGTTCTGTGATGATCGGGTTTGTGAATGCGCTGGCGA 391
||||||.||.|||||.||.||.|||.|.||.||.||.|||||||||||.|
BL00096___yba 339 GAAATTTATTCCGCGGTCGGTTATGGTAGGTTTCGTAAATGCGCTGGCCA 388
BSNT_00304___ 392 TCCTTATCTTCTCAGCGCAGCTTCCCCAGTTTGAAGGTGCTTCTTGGAGC 441
|..|.|||||....||||||.||||.||.||||..||.|.||| ||..
BL00096___yba 389 TTTTAATCTTTATGGCGCAGGTTCCTCATTTTGTTGGAGTTTC---GAAT 435
BSNT_00304___ 442 AT---GTATGCGATGCTTGCCGGGT----CGTTGGTTATTATTTATGTGC 484
|| |||| |.|| ||.|.||| |||||.|.|||||.|||||.|
BL00096___yba 436 ATGACGTAT--GTTG--TGGCCGGTATTACGTTGTTGATTATCTATGTTC 481
BSNT_00304___ 485 TGCCGAGATTTACGACTGCTGTTCCGTCTCCGCTTGTGGCGATTATTGTG 534
|.||..|.|||||.|..||.|||||.|||.|.|||||.||.|||||||.|
BL00096___yba 482 TTCCCCGCTTTACAAAAGCCGTTCCATCTGCACTTGTTGCCATTATTGCG 531
BSNT_00304___ 535 ATGACAATAATTGCGGTCACTTTC---CATGTGGATGTGCGGACGGTTGG 581
|||||..||.|||| ||.|||| |||.|.|||.||||.||.||.||
BL00096___yba 532 ATGACTGTATTTGC---CATTTTCGGTCATTTTGATCTGCGCACTGTCGG 578
BSNT_00304___ 582 TGATATGG----------GCAATATTTCTAGTTCATTGCCT-CATTTCTT 620
||||.||| |||| ||||||||| |.|||.|.
BL00096___yba 579 TGATTTGGGAGAAATGAAGCAA----------TCATTGCCTGCCTTTATG 618
BSNT_00304___ 621 AATCCCTGATGTTCCGTTTACCTTTGAAACACTGCAAATTATTTTTCCTT 670
|.|||| .||.||||.||.|..|||||.|||.||...||||||||||
BL00096___yba 619 ATTCCC-AATATTCCTTTCAATTTTGAGACATTGGCCATTATTTTTC--- 664
BSNT_00304___ 671 ATTCAATTGCTTTAGCGTTT------GTCGGGTTGCTTGAATCTTTGCTG 714
|||..||.||.|||.|| ||.||.||||||||.||.||..|.
BL00096___yba 665 ---CAACAGCCTTTGCGCTTTCCATCGTTGGCTTGCTTGAGTCATTATTA 711
BSNT_00304___ 715 ACAGCACAGATTATTGATGAGATGACGGATACGGACAGTGATAAAAATAA 764
||..|....|||.|||||||.||||||||||||||.||.||.|||||.|.
BL00096___yba 712 ACCTCTTCTATTGTTGATGATATGACGGATACGGAAAGCGACAAAAACAG 761
BSNT_00304___ 765 AGAGAGCCGCGGACAGGGAATTGCGAATATCGTGACTGGATTCTTTGGCG 814
.||.||||||||||||||.||.||.||.||.||..|.||.||.||.||.|
BL00096___yba 762 GGAAAGCCGCGGACAGGGCATCGCCAACATTGTCGCCGGTTTTTTCGGAG 811
BSNT_00304___ 815 GAATGGCAGGCTGCGCTATGATCGGACAATCTGTCATTAATACAAAAGCG 864
|.|||||.||.|||||.||||||||.||.|||||.||.|||..||||.|.
BL00096___yba 812 GCATGGCGGGATGCGCGATGATCGGCCAGTCTGTGATCAATGTAAAATCA 861
BSNT_00304___ 865 GGCGGTCGCGGACGTTTGTCAGCATTTGTTGCCGGTGCTTTTC-TGATGT 913
||.||..|.||.||.|||||..|.||||||||||||| |.||| |.||||
BL00096___yba 862 GGAGGAAGAGGCCGCTTGTCCACCTTTGTTGCCGGTG-TCTTCTTAATGT 910
BSNT_00304___ 914 TTTTAATTGCGGTGTTAAGTCA-TGTCGTGGTGAAAATCCCAATGGCGGC 962
|||||||...||||.|..|..| || .||.||..||||.||.|||||.||
BL00096___yba 911 TTTTAATCATGGTGCTGGGCGACTG-GGTCGTACAAATTCCGATGGCAGC 959
BSNT_00304___ 963 GTTAG-TAGCTGTAATGGTTATGGTGTCTGTCGGCACTTTTGATTGGTCT 1011
.||.| |.|| ||.|||.|||||||.||..||||.||.|||||.||||||
BL00096___yba 960 TTTGGCTGGC-GTGATGATTATGGTATCGATCGGGACGTTTGACTGGTCT 1008
BSNT_00304___ 1012 TC-CTTAAAAGGTCTCAAAAAAGCGCCGCTCACGGACTCGATTGTCATGG 1060
|| .|||..|.|| |.|.|||.|.||||||.|||||.||.|||||||||.
BL00096___yba 1009 TCGTTTAGCATGT-TAAGAAAGGTGCCGCTGACGGATTCCATTGTCATGA 1057
BSNT_00304___ 1061 TTGTGACTGTGGTTACGGTTGTTGTGACGGATGACTTATCTAAGGGTGTA 1110
||||.||.||.|||||.|||||.|..||..|.||.|||||.||.||.||.
BL00096___yba 1058 TTGTAACCGTCGTTACCGTTGTGGCCACCCACGATTTATCAAAAGGGGTT 1107
BSNT_00304___ 1111 TTTGTCGGTGTTCTTTTAAGTGCCGTGTTCTTTGTGGCAAAAATCTCGAA 1160
||.|.|||.||..|||||||.||..|.|||||.||.||.||||||||.||
BL00096___yba 1108 TTCGCCGGCGTGATTTTAAGCGCAATCTTCTTCGTAGCGAAAATCTCCAA 1157
BSNT_00304___ 1161 GCTGAAAATCGTTTCTCATGCAGAGGA-TCAAAAGCTTAGAACG-TATCA 1208
.||.||||| ||.|||..| |||.||| |.|||| ..|||
BL00096___yba 1158 ACTAAAAAT---------TGAAGAAAAGTCAGAAG---AAAACGCGGTCA 1195
BSNT_00304___ 1209 AG-------TGAAGGGGCAAATCTTTTTTGCGTCAGT----GACTGATCT 1247
|| |.||.||.|||.|.||.|||||.||.|| ||.| ||.
BL00096___yba 1196 AGTACATCATCAAAGGACAAGTTTTCTTTGCATCGGTTCAAGATT--TCG 1243
BSNT_00304___ 1248 TACGAATGCGTTTATATATCAAGAGGATATTGAGC---------GGGTTG 1288
|| ||..|.|||| .||..||| |||| .|||..
BL00096___yba 1244 TA--AACTCCTTTA-----AAACGGGA----GAGCAAACGAAAAAGGTCA 1282
BSNT_00304___ 1289 TGATTGACTTAACTGAAGCTCACGTATGGGACGATTCTGGTGCGGCCGCA 1338
|..||||.||..||||.||.||..|||||||.|||||.|.||.|||.||.
BL00096___yba 1283 TTCTTGATTTTTCTGAGGCCCATATATGGGATGATTCCGCTGTGGCGGCT 1332
BSNT_00304___ 1339 CTTGATAAGATTGTTGCGAAGTTCAAGGAACAAGGCATTGAAGCTGAGTT 1388
.|.|||||..|.|||..|||..|.||.||.|||||.||.||.|.|||.||
BL00096___yba 1333 ATCGATAAAGTCGTTTTGAAAATGAAAGAGCAAGGAATAGATGTTGACTT 1382
BSNT_00304___ 1389 AAAAGGTTTGAATAAAGCGAG--------------------TA--AATCT 1416
.|..||.||.|||.||.|.|| || ||.||
BL00096___yba 1383 GATTGGATTAAATGAATCCAGCTGGAAGCTGGTCGAAAAATTAGCAACCT 1432
BSNT_00304___ 1417 CTAATGAA---------ACAGATGGCA------TAA 1437
.|.||.|| .||| ||.|| |||
BL00096___yba 1433 ATGATCAACCTCATCGTTCAG-TGTCAAATCACTAA 1467
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