Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00304 and BL00096

See Amino acid alignment / Visit BSNT_00304 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:57
# Commandline: needle
#    -asequence dna-align/BSNT_00304___ybaR.1.5803.seq
#    -bsequence dna-align/BL00096___ybaR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00304___ybaR-BL00096___ybaR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00304___ybaR-BL00096___ybaR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00304___ybaR
# 2: BL00096___ybaR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1536
# Identity:    1001/1536 (65.2%)
# Similarity:  1001/1536 (65.2%)
# Gaps:         168/1536 (10.9%)
# Score: 3016.0
# 
#
#=======================================

BSNT_00304___      1 TTGAATGATAGTTTTACATTAAAACAGC-AATGGTTCGGCAATATCCGAA     49
                     ||||||    |||..|||.|.|||.||| |||||||....|||.|.||..
BL00096___yba      1 TTGAAT----GTTAAACAATTAAATAGCGAATGGTTTTCTAATGTACGGG     46

BSNT_00304___     50 AAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTAATTCCTGAAGCG     99
                     ..||.||.|||.|.||.||..|.||.|||.|.||..|.|||||||||||.
BL00096___yba     47 GGGATATCCTTTCGGGTATCGTCGTAGCGCTTGCTCTCATTCCTGAAGCC     96

BSNT_00304___    100 ATTGGCTTTTCTATTATAGCCGGTGTGGATCCGATGGTCGGTCTTTATGC    149
                     ||.|..||.||.||.||.||.|||||.||.||||||||.|||.|.||.||
BL00096___yba     97 ATAGCGTTCTCCATCATTGCGGGTGTAGACCCGATGGTAGGTTTGTACGC    146

BSNT_00304___    150 GTCATTTTGTATAGCCATTATTATTTCTATTTTTGGCGGCAGACCTGGC-    198
                     .||.||||||||.|||.||.|.|||||..||...||||||.|.|| ||| 
BL00096___yba    147 ATCTTTTTGTATCGCCGTTGTCATTTCCTTTACGGGCGGCCGTCC-GGCG    195

BSNT_00304___    199 ATGATTTCAGCTGCGACAGGCTCAATGGCAGTCGTT--ATGGTGTCGCTG    246
                     |||||.|||||.|||||.||..|.|||||  ||.||  ||||...|..||
BL00096___yba    196 ATGATATCAGCCGCGACCGGGGCGATGGC--TCTTTTGATGGGAACTTTG    243

BSNT_00304___    247 GTTGCTGATCATGGGCTTCAGTATTTATTTGCGGCTACGATTTTGACAGG    296
                     ||....|||||.||||||.|.|||||||||||.|||||||||||.||.||
BL00096___yba    244 GTCAGAGATCACGGGCTTGATTATTTATTTGCTGCTACGATTTTAACGGG    293

BSNT_00304___    297 TATTATTCAGGTGAT-TTTAGGTATCAGT----AAAATTGCAAGATTAAT    341
                     .||.||.||..|.|| |||.||     ||    ||.|||||..|.||.||
BL00096___yba    294 AATCATCCAATTAATATTTGGG-----GTGCTGAAGATTGCGCGCTTTAT    338

BSNT_00304___    342 GAAATTCATCCCGCGTTCTGTGATGATCGGGTTTGTGAATGCGCTGGCGA    391
                     ||||||.||.|||||.||.||.|||.|.||.||.||.|||||||||||.|
BL00096___yba    339 GAAATTTATTCCGCGGTCGGTTATGGTAGGTTTCGTAAATGCGCTGGCCA    388

BSNT_00304___    392 TCCTTATCTTCTCAGCGCAGCTTCCCCAGTTTGAAGGTGCTTCTTGGAGC    441
                     |..|.|||||....||||||.||||.||.||||..||.|.|||   ||..
BL00096___yba    389 TTTTAATCTTTATGGCGCAGGTTCCTCATTTTGTTGGAGTTTC---GAAT    435

BSNT_00304___    442 AT---GTATGCGATGCTTGCCGGGT----CGTTGGTTATTATTTATGTGC    484
                     ||   ||||  |.||  ||.|.|||    |||||.|.|||||.|||||.|
BL00096___yba    436 ATGACGTAT--GTTG--TGGCCGGTATTACGTTGTTGATTATCTATGTTC    481

BSNT_00304___    485 TGCCGAGATTTACGACTGCTGTTCCGTCTCCGCTTGTGGCGATTATTGTG    534
                     |.||..|.|||||.|..||.|||||.|||.|.|||||.||.|||||||.|
BL00096___yba    482 TTCCCCGCTTTACAAAAGCCGTTCCATCTGCACTTGTTGCCATTATTGCG    531

BSNT_00304___    535 ATGACAATAATTGCGGTCACTTTC---CATGTGGATGTGCGGACGGTTGG    581
                     |||||..||.||||   ||.||||   |||.|.|||.||||.||.||.||
BL00096___yba    532 ATGACTGTATTTGC---CATTTTCGGTCATTTTGATCTGCGCACTGTCGG    578

BSNT_00304___    582 TGATATGG----------GCAATATTTCTAGTTCATTGCCT-CATTTCTT    620
                     ||||.|||          ||||          ||||||||| |.|||.|.
BL00096___yba    579 TGATTTGGGAGAAATGAAGCAA----------TCATTGCCTGCCTTTATG    618

BSNT_00304___    621 AATCCCTGATGTTCCGTTTACCTTTGAAACACTGCAAATTATTTTTCCTT    670
                     |.|||| .||.||||.||.|..|||||.|||.||...||||||||||   
BL00096___yba    619 ATTCCC-AATATTCCTTTCAATTTTGAGACATTGGCCATTATTTTTC---    664

BSNT_00304___    671 ATTCAATTGCTTTAGCGTTT------GTCGGGTTGCTTGAATCTTTGCTG    714
                        |||..||.||.|||.||      ||.||.||||||||.||.||..|.
BL00096___yba    665 ---CAACAGCCTTTGCGCTTTCCATCGTTGGCTTGCTTGAGTCATTATTA    711

BSNT_00304___    715 ACAGCACAGATTATTGATGAGATGACGGATACGGACAGTGATAAAAATAA    764
                     ||..|....|||.|||||||.||||||||||||||.||.||.|||||.|.
BL00096___yba    712 ACCTCTTCTATTGTTGATGATATGACGGATACGGAAAGCGACAAAAACAG    761

BSNT_00304___    765 AGAGAGCCGCGGACAGGGAATTGCGAATATCGTGACTGGATTCTTTGGCG    814
                     .||.||||||||||||||.||.||.||.||.||..|.||.||.||.||.|
BL00096___yba    762 GGAAAGCCGCGGACAGGGCATCGCCAACATTGTCGCCGGTTTTTTCGGAG    811

BSNT_00304___    815 GAATGGCAGGCTGCGCTATGATCGGACAATCTGTCATTAATACAAAAGCG    864
                     |.|||||.||.|||||.||||||||.||.|||||.||.|||..||||.|.
BL00096___yba    812 GCATGGCGGGATGCGCGATGATCGGCCAGTCTGTGATCAATGTAAAATCA    861

BSNT_00304___    865 GGCGGTCGCGGACGTTTGTCAGCATTTGTTGCCGGTGCTTTTC-TGATGT    913
                     ||.||..|.||.||.|||||..|.||||||||||||| |.||| |.||||
BL00096___yba    862 GGAGGAAGAGGCCGCTTGTCCACCTTTGTTGCCGGTG-TCTTCTTAATGT    910

BSNT_00304___    914 TTTTAATTGCGGTGTTAAGTCA-TGTCGTGGTGAAAATCCCAATGGCGGC    962
                     |||||||...||||.|..|..| || .||.||..||||.||.|||||.||
BL00096___yba    911 TTTTAATCATGGTGCTGGGCGACTG-GGTCGTACAAATTCCGATGGCAGC    959

BSNT_00304___    963 GTTAG-TAGCTGTAATGGTTATGGTGTCTGTCGGCACTTTTGATTGGTCT   1011
                     .||.| |.|| ||.|||.|||||||.||..||||.||.|||||.||||||
BL00096___yba    960 TTTGGCTGGC-GTGATGATTATGGTATCGATCGGGACGTTTGACTGGTCT   1008

BSNT_00304___   1012 TC-CTTAAAAGGTCTCAAAAAAGCGCCGCTCACGGACTCGATTGTCATGG   1060
                     || .|||..|.|| |.|.|||.|.||||||.|||||.||.|||||||||.
BL00096___yba   1009 TCGTTTAGCATGT-TAAGAAAGGTGCCGCTGACGGATTCCATTGTCATGA   1057

BSNT_00304___   1061 TTGTGACTGTGGTTACGGTTGTTGTGACGGATGACTTATCTAAGGGTGTA   1110
                     ||||.||.||.|||||.|||||.|..||..|.||.|||||.||.||.||.
BL00096___yba   1058 TTGTAACCGTCGTTACCGTTGTGGCCACCCACGATTTATCAAAAGGGGTT   1107

BSNT_00304___   1111 TTTGTCGGTGTTCTTTTAAGTGCCGTGTTCTTTGTGGCAAAAATCTCGAA   1160
                     ||.|.|||.||..|||||||.||..|.|||||.||.||.||||||||.||
BL00096___yba   1108 TTCGCCGGCGTGATTTTAAGCGCAATCTTCTTCGTAGCGAAAATCTCCAA   1157

BSNT_00304___   1161 GCTGAAAATCGTTTCTCATGCAGAGGA-TCAAAAGCTTAGAACG-TATCA   1208
                     .||.|||||         ||.|||..| |||.|||   |.|||| ..|||
BL00096___yba   1158 ACTAAAAAT---------TGAAGAAAAGTCAGAAG---AAAACGCGGTCA   1195

BSNT_00304___   1209 AG-------TGAAGGGGCAAATCTTTTTTGCGTCAGT----GACTGATCT   1247
                     ||       |.||.||.|||.|.||.|||||.||.||    ||.|  ||.
BL00096___yba   1196 AGTACATCATCAAAGGACAAGTTTTCTTTGCATCGGTTCAAGATT--TCG   1243

BSNT_00304___   1248 TACGAATGCGTTTATATATCAAGAGGATATTGAGC---------GGGTTG   1288
                     ||  ||..|.||||     .||..|||    ||||         .|||..
BL00096___yba   1244 TA--AACTCCTTTA-----AAACGGGA----GAGCAAACGAAAAAGGTCA   1282

BSNT_00304___   1289 TGATTGACTTAACTGAAGCTCACGTATGGGACGATTCTGGTGCGGCCGCA   1338
                     |..||||.||..||||.||.||..|||||||.|||||.|.||.|||.||.
BL00096___yba   1283 TTCTTGATTTTTCTGAGGCCCATATATGGGATGATTCCGCTGTGGCGGCT   1332

BSNT_00304___   1339 CTTGATAAGATTGTTGCGAAGTTCAAGGAACAAGGCATTGAAGCTGAGTT   1388
                     .|.|||||..|.|||..|||..|.||.||.|||||.||.||.|.|||.||
BL00096___yba   1333 ATCGATAAAGTCGTTTTGAAAATGAAAGAGCAAGGAATAGATGTTGACTT   1382

BSNT_00304___   1389 AAAAGGTTTGAATAAAGCGAG--------------------TA--AATCT   1416
                     .|..||.||.|||.||.|.||                    ||  ||.||
BL00096___yba   1383 GATTGGATTAAATGAATCCAGCTGGAAGCTGGTCGAAAAATTAGCAACCT   1432

BSNT_00304___   1417 CTAATGAA---------ACAGATGGCA------TAA   1437
                     .|.||.||         .||| ||.||      |||
BL00096___yba   1433 ATGATCAACCTCATCGTTCAG-TGTCAAATCACTAA   1467


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