Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06224 and BL00094

See Amino acid alignment / Visit BSNT_06224 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:12
# Commandline: needle
#    -asequence dna-align/BSNT_06224___yybS.1.5803.seq
#    -bsequence dna-align/BL00094___yybS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06224___yybS-BL00094___yybS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06224___yybS-BL00094___yybS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06224___yybS
# 2: BL00094___yybS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1036
# Identity:     611/1036 (59.0%)
# Similarity:   611/1036 (59.0%)
# Gaps:         212/1036 (20.5%)
# Score: 1504.0
# 
#
#=======================================

BSNT_06224___      1 GTGAAACAAACGAGAGCTTTAATGGAAGGTGCTATTTTAATCAGTCTGTT     50
                     |||||||||||.|||||||||.|.|||||.|||||..|..|||||.|.||
BL00094___yyb      1 GTGAAACAAACAAGAGCTTTAGTAGAAGGCGCTATCATGGTCAGTATTTT     50

BSNT_06224___     51 TGCGATCATTACGCTTCTGGT---CGTTTATGTTCCTGTGATTGGAACAA     97
                     |||   |.||..|||..||.|   |.|.|||.|||||.|.||.|||||.|
BL00094___yyb     51 TGC---CGTTTTGCTGATGATCAGCCTCTATATTCCTTTCATCGGAACCA     97

BSNT_06224___     98 TTCTGTTATTTGCACTGCCGCTGC---CAATGATCTTGT--ATACGATCA    142
                     ||||.|||||..|.||||||||||   |||||     ||  |.|||||||
BL00094___yyb     98 TTCTTTTATTGACGCTGCCGCTGCCTGCAATG-----GTTCAAACGATCA    142

BSNT_06224___    143 GACATGGATTGAAGCTAGGGATATGGATGGGCGCT-GTCAGTCTTCCGGT    191
                     |.||.||..|.||||..|||||.|.|.|||| |.| ||||||.|.||.||
BL00094___yyb    143 GGCACGGTCTAAAGCCGGGGATTTCGGTGGG-GTTGGTCAGTTTACCCGT    191

BSNT_06224___    192 TGTTTTTATTGTCGGGTCCTTTAACGGGCTTATTGTAGCTTTT--ATGTC    239
                     |...||.||||.|||.|||||...|||.||.||..|.|||.||  | ||.
BL00094___yyb    192 TTCATTGATTGCCGGTTCCTTAGGCGGACTGATGTTTGCTATTCCA-GTA    240

BSNT_06224___    240 AGCTTG-CGCCGGCATTGCCATGGGACATTTT--TTCAAAAGGAAAGAGC    286
                     ||  || |||.|||.|...||||||  .||||  |.||.|||.|||||||
BL00094___yyb    241 AG--TGCCGCGGGCGTGATCATGGG--CTTTTACTACAGAAGAAAAGAGC    286

BSNT_06224___    287 CCGGGCACGCCATTATTTCGGGCGCTCTTATTTATAT-GCTTAGTATTGT    335
                     |.|..||.||.|||..|.|.|..||..|||..||||| |.||.|| |.||
BL00094___yyb    287 CGGCCCAAGCGATTGCTGCAGCAGCCGTTACATATATGGTTTCGT-TCGT    335

BSNT_06224___    336 CTTCTATT--TTGTGATAAGCATTCAGTTT-TTGGGTATCAATATCATTG    382
                     |  ||..|  ||.|.||.|||.|||||||| ||||.| |.||..|.||.|
BL00094___yyb    336 C--CTGCTGCTTATCATCAGCGTTCAGTTTCTTGGAT-TAAACTTAATAG    382

BSNT_06224___    383 ATGA-GGCGATGACACAATACCGGCAATCTCTTGATATGGTAGAAAC---    428
                     | || |||       ||||     |||.|     ||||..| |||||   
BL00094___yyb    383 A-GACGGC-------CAAT-----CAAGC-----ATATAAT-GAAACATT    413

BSNT_06224___    429 ---------TGTAGCG------AAGCAGTCGGGCAATGCTGGACAGTTTG    463
                              ||.|.||      ||.||||..||.||||.|..|.|..|.|
BL00094___yyb    414 CAAAACCTTTGAATCGAGTATCAAACAGTTTGGAAATGATAAAGAAGTGG    463

BSNT_06224___    464 AGAAGCA-ATTAAAACTGATGGAAGAACAATT------GGGTATCGTTCA    506
                     ..||||| ||| .||.||.|..|.||.|||||      ||    ||  ||
BL00094___yyb    464 CTAAGCAGATT-GAATTGTTAAATGAGCAATTCAAACAGG----CG--CA    506

BSNT_06224___    507 ATATCTTTTTCCAACAGCTATTGTGATGGTAGGAGTTATTTT--------    548
                     ||||.|.|.||||||.||.|||||||          ||||||        
BL00094___yyb    507 ATATTTATATCCAACGGCCATTGTGA----------TATTTTCCGGAATC    546

BSNT_06224___    549 --TTCTTTCCTCAGTTACCTTATCGCTAAGCCGCT-CTTAAGGCG-ATTC    594
                       |.|.||..|.|.|.|.||..||||.||||||.| ||| .|||| ||..
BL00094___yyb    547 ACTGCGTTTTTGAATCATCTGCTCGCAAAGCCGGTGCTT-CGGCGCATCA    595

BSNT_06224___    595 TCCCCCGATATTCCTAATCTAAAGCCTTTTAGAGAGTTGAAGTTTCCGCA    644
                     |.|    |.||.||...|||.||.||.||.||.||..|||...|||||||
BL00094___yyb    596 TAC----AAATACCGTCTCTGAAACCGTTCAGGGATATGAGACTTCCGCA    641

BSNT_06224___    645 AAG-----TGTTGTAGTACTGTATTT------GATTAT--TGTCATGCTT    681
                     |||     | |||.|    |.|||||      ||||.|  ||||  |||.
BL00094___yyb    642 AAGCATTAT-TTGGA----TCTATTTGTTGACGATTCTTCTGTC--GCTG    684

BSNT_06224___    682 TCATTTTTGCCTTTAGAAAAAGGC----CAAATGCTGTACTCTATCGCT-    726
                     .|     |.||.|| |||.|.|||    .|.||    ||||||.| .|| 
BL00094___yyb    685 GC-----TCCCGTT-GAAGAGGGCAGTGTATAT----TACTCTGT-TCTG    723

BSNT_06224___    727 TTAAATGGGGAGT-TTATACTCGGGTTTCTGATTTTCATCCAAGGTTTAT    775
                     |||||| |.|||| |.||..|.||.|||.|..|..||||||||||.||.|
BL00094___yyb    724 TTAAAT-GCGAGTCTCATCATGGGCTTTGTCTTGGTCATCCAAGGGTTTT    772

BSNT_06224___    776 CATTTATCTTTTTCTATTGCCAT---AAGAAACAATAT-CCAAAGG--CT    819
                     |||||.|.||||.||.|||||||   |||||||    | ||||..|  ||
BL00094___yyb    773 CATTTGTGTTTTACTTTTGCCATGCCAAGAAAC----TGCCAACTGTCCT    818

BSNT_06224___    820 GCGGCTGTGATTGCTGTCATACTTGGGTTTGTGCATCCGGTCTTCATGGC    869
                     ||  |.||..||..|.|.||..|.|||||          ||.|||     
BL00094___yyb    819 GC--CGGTTCTTTTTTTAATTATCGGGTT----------GTTTTC-----    851

BSNT_06224___    870 GGCC-------------ATTCGCATTTTAGGCGTTTTAGATATGGGCTTT    906
                      |||             .|||||||.|||||..|..|.|||||.||||||
BL00094___yyb    852 -GCCCCTGCTGTACCTTGTTCGCATCTTAGGTATAATTGATATAGGCTTT    900

BSNT_06224___    907 CATATAAG-GAATAAGGTGAAGTGA-----------    930
                     .|..|.|| ||  |||    |||||           
BL00094___yyb    901 AACTTGAGAGA--AAG----AGTGAAAAAATCGTAG    930


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