Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06224 and BL00094
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:12
# Commandline: needle
# -asequence dna-align/BSNT_06224___yybS.1.5803.seq
# -bsequence dna-align/BL00094___yybS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06224___yybS-BL00094___yybS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06224___yybS-BL00094___yybS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06224___yybS
# 2: BL00094___yybS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1036
# Identity: 611/1036 (59.0%)
# Similarity: 611/1036 (59.0%)
# Gaps: 212/1036 (20.5%)
# Score: 1504.0
#
#
#=======================================
BSNT_06224___ 1 GTGAAACAAACGAGAGCTTTAATGGAAGGTGCTATTTTAATCAGTCTGTT 50
|||||||||||.|||||||||.|.|||||.|||||..|..|||||.|.||
BL00094___yyb 1 GTGAAACAAACAAGAGCTTTAGTAGAAGGCGCTATCATGGTCAGTATTTT 50
BSNT_06224___ 51 TGCGATCATTACGCTTCTGGT---CGTTTATGTTCCTGTGATTGGAACAA 97
||| |.||..|||..||.| |.|.|||.|||||.|.||.|||||.|
BL00094___yyb 51 TGC---CGTTTTGCTGATGATCAGCCTCTATATTCCTTTCATCGGAACCA 97
BSNT_06224___ 98 TTCTGTTATTTGCACTGCCGCTGC---CAATGATCTTGT--ATACGATCA 142
||||.|||||..|.|||||||||| ||||| || |.|||||||
BL00094___yyb 98 TTCTTTTATTGACGCTGCCGCTGCCTGCAATG-----GTTCAAACGATCA 142
BSNT_06224___ 143 GACATGGATTGAAGCTAGGGATATGGATGGGCGCT-GTCAGTCTTCCGGT 191
|.||.||..|.||||..|||||.|.|.|||| |.| ||||||.|.||.||
BL00094___yyb 143 GGCACGGTCTAAAGCCGGGGATTTCGGTGGG-GTTGGTCAGTTTACCCGT 191
BSNT_06224___ 192 TGTTTTTATTGTCGGGTCCTTTAACGGGCTTATTGTAGCTTTT--ATGTC 239
|...||.||||.|||.|||||...|||.||.||..|.|||.|| | ||.
BL00094___yyb 192 TTCATTGATTGCCGGTTCCTTAGGCGGACTGATGTTTGCTATTCCA-GTA 240
BSNT_06224___ 240 AGCTTG-CGCCGGCATTGCCATGGGACATTTT--TTCAAAAGGAAAGAGC 286
|| || |||.|||.|...|||||| .|||| |.||.|||.|||||||
BL00094___yyb 241 AG--TGCCGCGGGCGTGATCATGGG--CTTTTACTACAGAAGAAAAGAGC 286
BSNT_06224___ 287 CCGGGCACGCCATTATTTCGGGCGCTCTTATTTATAT-GCTTAGTATTGT 335
|.|..||.||.|||..|.|.|..||..|||..||||| |.||.|| |.||
BL00094___yyb 287 CGGCCCAAGCGATTGCTGCAGCAGCCGTTACATATATGGTTTCGT-TCGT 335
BSNT_06224___ 336 CTTCTATT--TTGTGATAAGCATTCAGTTT-TTGGGTATCAATATCATTG 382
| ||..| ||.|.||.|||.|||||||| ||||.| |.||..|.||.|
BL00094___yyb 336 C--CTGCTGCTTATCATCAGCGTTCAGTTTCTTGGAT-TAAACTTAATAG 382
BSNT_06224___ 383 ATGA-GGCGATGACACAATACCGGCAATCTCTTGATATGGTAGAAAC--- 428
| || ||| |||| |||.| ||||..| |||||
BL00094___yyb 383 A-GACGGC-------CAAT-----CAAGC-----ATATAAT-GAAACATT 413
BSNT_06224___ 429 ---------TGTAGCG------AAGCAGTCGGGCAATGCTGGACAGTTTG 463
||.|.|| ||.||||..||.||||.|..|.|..|.|
BL00094___yyb 414 CAAAACCTTTGAATCGAGTATCAAACAGTTTGGAAATGATAAAGAAGTGG 463
BSNT_06224___ 464 AGAAGCA-ATTAAAACTGATGGAAGAACAATT------GGGTATCGTTCA 506
..||||| ||| .||.||.|..|.||.||||| || || ||
BL00094___yyb 464 CTAAGCAGATT-GAATTGTTAAATGAGCAATTCAAACAGG----CG--CA 506
BSNT_06224___ 507 ATATCTTTTTCCAACAGCTATTGTGATGGTAGGAGTTATTTT-------- 548
||||.|.|.||||||.||.||||||| ||||||
BL00094___yyb 507 ATATTTATATCCAACGGCCATTGTGA----------TATTTTCCGGAATC 546
BSNT_06224___ 549 --TTCTTTCCTCAGTTACCTTATCGCTAAGCCGCT-CTTAAGGCG-ATTC 594
|.|.||..|.|.|.|.||..||||.||||||.| ||| .|||| ||..
BL00094___yyb 547 ACTGCGTTTTTGAATCATCTGCTCGCAAAGCCGGTGCTT-CGGCGCATCA 595
BSNT_06224___ 595 TCCCCCGATATTCCTAATCTAAAGCCTTTTAGAGAGTTGAAGTTTCCGCA 644
|.| |.||.||...|||.||.||.||.||.||..|||...|||||||
BL00094___yyb 596 TAC----AAATACCGTCTCTGAAACCGTTCAGGGATATGAGACTTCCGCA 641
BSNT_06224___ 645 AAG-----TGTTGTAGTACTGTATTT------GATTAT--TGTCATGCTT 681
||| | |||.| |.||||| ||||.| |||| |||.
BL00094___yyb 642 AAGCATTAT-TTGGA----TCTATTTGTTGACGATTCTTCTGTC--GCTG 684
BSNT_06224___ 682 TCATTTTTGCCTTTAGAAAAAGGC----CAAATGCTGTACTCTATCGCT- 726
.| |.||.|| |||.|.||| .|.|| ||||||.| .||
BL00094___yyb 685 GC-----TCCCGTT-GAAGAGGGCAGTGTATAT----TACTCTGT-TCTG 723
BSNT_06224___ 727 TTAAATGGGGAGT-TTATACTCGGGTTTCTGATTTTCATCCAAGGTTTAT 775
|||||| |.|||| |.||..|.||.|||.|..|..||||||||||.||.|
BL00094___yyb 724 TTAAAT-GCGAGTCTCATCATGGGCTTTGTCTTGGTCATCCAAGGGTTTT 772
BSNT_06224___ 776 CATTTATCTTTTTCTATTGCCAT---AAGAAACAATAT-CCAAAGG--CT 819
|||||.|.||||.||.||||||| ||||||| | ||||..| ||
BL00094___yyb 773 CATTTGTGTTTTACTTTTGCCATGCCAAGAAAC----TGCCAACTGTCCT 818
BSNT_06224___ 820 GCGGCTGTGATTGCTGTCATACTTGGGTTTGTGCATCCGGTCTTCATGGC 869
|| |.||..||..|.|.||..|.||||| ||.|||
BL00094___yyb 819 GC--CGGTTCTTTTTTTAATTATCGGGTT----------GTTTTC----- 851
BSNT_06224___ 870 GGCC-------------ATTCGCATTTTAGGCGTTTTAGATATGGGCTTT 906
||| .|||||||.|||||..|..|.|||||.||||||
BL00094___yyb 852 -GCCCCTGCTGTACCTTGTTCGCATCTTAGGTATAATTGATATAGGCTTT 900
BSNT_06224___ 907 CATATAAG-GAATAAGGTGAAGTGA----------- 930
.|..|.|| || ||| |||||
BL00094___yyb 901 AACTTGAGAGA--AAG----AGTGAAAAAATCGTAG 930
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