Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05330 and BL00085
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:26
# Commandline: needle
# -asequence dna-align/BSNT_05330___nagB.1.5803.seq
# -bsequence dna-align/BL00085___nagB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05330___nagB-BL00085___nagB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05330___nagB-BL00085___nagB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05330___nagB
# 2: BL00085___nagB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 824
# Identity: 476/824 (57.8%)
# Similarity: 476/824 (57.8%)
# Gaps: 172/824 (20.9%)
# Score: 1200.5
#
#
#=======================================
BSNT_05330___ 1 ATGAAAGTAATGGAATGTCAAACGTATGAAGAGCTAAGCCAAAAAGCAGC 50
|||||..|.||.|||..|.||...|||.|.||..|.||||||..|||.||
BL00085___nag 1 ATGAAGATCATTGAAGCTAAAGATTATCAGGACATGAGCCAATCAGCCGC 50
BSNT_05330___ 51 CAGAATAACGGCAGATACAATCA------AAGAAAA------ACCTGATG 88
|.||.| .|||| |||..|| |.|||...
BL00085___nag 51 CCGATT------------CATCATCGAGCAAGTGAATCGCTTATCTGCAC 88
BSNT_05330___ 89 CCGTTCTCGGGTTAGCGACAGGCGGCACACCGGAAGGCACGTATC----- 133
|.||||||||..|.||.||.||.||.||.||....|||||.||||
BL00085___nag 89 CTGTTCTCGGCCTTGCAACCGGAGGAACGCCTCTCGGCACATATCAGGTT 138
BSNT_05330___ 134 -----GCGAGCTGATCCGCCTGCACCAAACTGAGAATCTCTCATTTCAA- 177
|..||.|.||.||| |.|..|||..|| .||.|||
BL00085___nag 139 TTAAGGGAAGATCATGCGC--GTAATAAAACGA---------CTTACAAG 177
BSNT_05330___ 178 AACATCACTACAGTTAATTTGGATGAGTACGCCGGACTTTCAAGCAACGC 227
.||.||..|||.|||||.||.||.|||||.|.|||..||| |
BL00085___nag 178 CACGTCTATACTGTTAACTTAGACGAGTATGTCGGCGTTT---------C 218
BSNT_05330___ 228 CCCG---------AACAGCTATCAC-TTCTATATG-AATGACCGTTTATT 266
|||| ||||||||| || ||||||||| ||..||.|.| ||
BL00085___nag 219 CCCGGATCATGAAAACAGCTAT-ACATTCTATATGAAAAAACAGCT--TT 265
BSNT_05330___ 267 TC-AGCATATCGACAGCAAGCCTAGCC---GGCATTTTATTCCGAATGGA 312
|| |.||.||.||||.|..||..|||| ..|| |.|||||||.||.
BL00085___nag 266 TCGATCACATTGACATCCCGCTCAGCCACACCCA---TCTTCCGAACGGG 312
BSNT_05330___ 313 AATGC---AGACGATTTGGAAGCCGAATGCAGACGGTATGAACAGCTAGT 359
|..|| .|||.| |||.|||||||||||.||.||||||..|||..|
BL00085___nag 313 ATGGCTTGTGACCA---GGATGCCGAATGCAGCCGCTATGAAGCGCTGAT 359
BSNT_05330___ 360 CGAGTCCCTCGGCGGCACTGACATTCAGCTTCTCGGCATCGGCCGAAACG 409
||||...||.||.||||.|||..||||..|.||||||.|||||...||||
BL00085___nag 360 CGAGCGGCTTGGAGGCATTGATCTTCAAGTGCTCGGCCTCGGCTTGAACG 409
BSNT_05330___ 410 GGCACATCGGCTTTAACGAACCGGGAACGTC--TTTCAAGTCGCGAACTC 457
|.||||||||.||||||||.|||||.||..| ||||| |||..|||.|
BL00085___nag 410 GCCACATCGGATTTAACGAGCCGGGCACCCCATTTTCA--TCGAAAACGC 457
BSNT_05330___ 458 AT---GTTG---TGACATTAAATGAGC-AAACCCGCCAAGCGAATGCCAG 500
|| |||| ||||| .|||.|.| ||| .||||.||||||.|
BL00085___nag 458 ATACGGTTGAACTGACA--CAATCAACGAAA-----GAAGCCAATGCCCG 500
BSNT_05330___ 501 ATATTTTCCTTCCATA-GACAGCGTGCCGAAAAAAGCGCTCACAATGGGA 549
.||||||..|||| || |||..|||.|||....||||..|.||.|||||.
BL00085___nag 501 CTATTTTGATTCC-TATGACGCCGTCCCGTCGCAAGCAATAACGATGGGC 549
BSNT_05330___ 550 ATTCAAACGATACTCTCAAGCAAGCGCATTCTGCTGCTCATTTCTGG--- 596
|||...|||||..|...||||||||..||.|||||||||.||||.||
BL00085___nag 550 ATTTCCACGATCATGAAAAGCAAGCAGATCCTGCTGCTCGTTTCAGGAGA 599
BSNT_05330___ 597 --AAAAAGCAAAGCGGAAGCTGTTCGTAAGCTGTT------AGAAGGAAA 638
||||||| |||.|.||...|| ||||||.| ||||..|||
BL00085___nag 600 GAAAAAAGC----CGGCATCTTGGCG-AAGCTGCTCACTGAAGAACCAAA 644
BSNT_05330___ 639 CATAAGCGAAGATTTTCCCGCATCTGCTTT------GCACC--------- 673
.|||||....|||||.||.|..|| |||||
BL00085___nag 645 ------TGAAGACACCCCCGCTTCCGTCTTAAAAACGCACCAAGACGTCG 688
BSNT_05330___ 674 TGCATTC-----------CGATGTTACGGTTTTGATTGATCGTG-----A 707
| || || ||||| .||.||..|||||| |
BL00085___nag 689 T-CA-TCATAGCGGACAGCGATG-------CTTTATCAATCGTGAAAGAA 729
BSNT_05330___ 708 AGCCGCGTCATTAAGACC--TTGA 729
||..| ||.|.|| ||||
BL00085___nag 730 AGGGG------TATGGCCTTTTGA 747
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