Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00001 and BL00076
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:39
# Commandline: needle
# -asequence dna-align/BSNT_00001___dnaA.1.5803.seq
# -bsequence dna-align/BL00076___dnaA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00001___dnaA-BL00076___dnaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00001___dnaA-BL00076___dnaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00001___dnaA
# 2: BL00076___dnaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1346
# Identity: 1099/1346 (81.6%)
# Similarity: 1099/1346 (81.6%)
# Gaps: 10/1346 ( 0.7%)
# Score: 4456.5
#
#
#=======================================
BSNT_00001___ 1 ATGGAAAATATATTAGACCTGTGGAACCAAGCCCTTGCTCAAATCGAAAA 50
|||.||||.||||..||.||.|||||.|||||..|.|..||.||||||||
BL00076___dna 1 ATGAAAAACATATCGGATCTTTGGAATCAAGCTTTGGGGCAGATCGAAAA 50
BSNT_00001___ 51 AAAGTTGAGCAAACCGAGTTTTGAGACTTGGATGAAGTCAACCAAAGCCC 100
|||.||||||||.||.||.|||||.||.||||||||.||.||.||.||||
BL00076___dna 51 AAAATTGAGCAAGCCCAGCTTTGAAACATGGATGAAATCGACAAAGGCCC 100
BSNT_00001___ 101 ACTCACTGCAAGGCGATACATTAACGATCACGGCTCCCAATGAATTTGCC 150
|.|||.||||.||||||||..|.|..|||||.||.||.||.||.||.|||
BL00076___dna 101 ATTCATTGCAGGGCGATACGCTGATCATCACCGCACCGAACGAGTTCGCC 150
BSNT_00001___ 151 AGAGACTGGCTGGAGTCCAGATACTTGCATCTGATTGCAGATACTATATA 200
|||||||||||.||.||.||||||.||||.|||||.||.|||||.||.||
BL00076___dna 151 AGAGACTGGCTTGAATCAAGATACCTGCACCTGATCGCCGATACGATCTA 200
BSNT_00001___ 201 TGAATTAACCGGGGAAGAATTGAGCATTAAGTTTGTCATTCCTCAAAATC 250
|||..|.||.||.|||||||||||||||||.||||||||||||||.||||
BL00076___dna 201 TGATCTGACAGGAGAAGAATTGAGCATTAAATTTGTCATTCCTCAGAATC 250
BSNT_00001___ 251 AAGATGTTGAGGACTTTATGCCGAAACCGCAAGTCAAAAAAGCGGTC-AA 299
||.|||..||.||.||||||||.||..|.|.|.|||||||| ..||| ||
BL00076___dna 251 AAAATGAAGAAGATTTTATGCCAAAGTCTCCAATCAAAAAA-ATGTCGAA 299
BSNT_00001___ 300 AGAAGATACATCTGATTTTCCTCAAAATATGCTCAATCCAAAATATACTT 349
||||||..|..||||||||||.|||||.|||||.|||||.||||||||.|
BL00076___dna 300 AGAAGAACCGGCTGATTTTCCGCAAAACATGCTGAATCCCAAATATACAT 349
BSNT_00001___ 350 TTGATACTTTTGTCATCGGATCTGGAAACCGATTTGCACACGCTGCTTCC 399
|||||||.||.||.|||||.||.|||||||||||.||.|||||.||.||.
BL00076___dna 350 TTGATACGTTCGTTATCGGTTCAGGAAACCGATTCGCCCACGCAGCGTCT 399
BSNT_00001___ 400 CTCGCAGTAGCGGAAGCACCCGCGAAAGCTTACAACCCTTTATTTATCTA 449
.|.|||||.||.|||||.||.||||||||||||||.||..|.|||||.||
BL00076___dna 400 TTGGCAGTGGCTGAAGCCCCGGCGAAAGCTTACAATCCGCTGTTTATTTA 449
BSNT_00001___ 450 TGGGGGCGTCGG-CTTAGGGAAA-ACGCACTTAATGCATGCGATCGGCCA 497
.|||||.||||| ||| ||||| ||.||||||||||||||||||||.||
BL00076___dna 450 CGGGGGAGTCGGACTT--GGAAAGACTCACTTAATGCATGCGATCGGGCA 497
BSNT_00001___ 498 TTATGTAATAGATCATAATCCTTCTGCCAAAGTGGTTTATCTGTCTTCTG 547
.|||||.||.|||||.|||||.|||||.||||||||||||.||||.||||
BL00076___dna 498 CTATGTCATCGATCACAATCCATCTGCAAAAGTGGTTTATTTGTCATCTG 547
BSNT_00001___ 548 AGAAATTTACAAACGAATTCATCAACTCTATCCGAGATAATAAAGCCGTC 597
|||||||||||||.||.|||||.|||||.|||||.||.||||||||.|||
BL00076___dna 548 AGAAATTTACAAATGAGTTCATTAACTCGATCCGTGACAATAAAGCTGTC 597
BSNT_00001___ 598 GACTTCCGCAATCGCTATCGAAATGTTGATGTGCTTTTGATAGATGATAT 647
||.||.|||||||||||||||||||||||.||.|||||.|||||.|||||
BL00076___dna 598 GATTTTCGCAATCGCTATCGAAATGTTGACGTTCTTTTAATAGACGATAT 647
BSNT_00001___ 648 TCAATTTTTAGCGGGGAAAGAACAAACCCAGGAAGAATTTTTCCATACAT 697
||||||||||||.||.||||||||.||.||.||.||||||||||||||.|
BL00076___dna 648 TCAATTTTTAGCCGGAAAAGAACAGACGCAAGAGGAATTTTTCCATACGT 697
BSNT_00001___ 698 TTAACACATTGCACGAAGAAAGCAAA-CAAATCGTCATTTCAAGTGACCG 746
||||.||..||||.||||||| |||| ||.||.||||||||.||.|||||
BL00076___dna 698 TTAATACGCTGCATGAAGAAA-CAAAGCAGATTGTCATTTCCAGCGACCG 746
BSNT_00001___ 747 ACCGCCAAAGGAAATTCCGACACTTGAGGACAGATTGCGCTCTCGTTTTG 796
.||.|||||.||.||.||.||.|||||.|||.|.||||||||.|||||||
BL00076___dna 747 GCCTCCAAAAGAGATCCCAACGCTTGAAGACCGTTTGCGCTCCCGTTTTG 796
BSNT_00001___ 797 AATGGGGACTTATTACAGATATCACACCGCCTGATCTAGAAACGAGAATT 846
||||||||.|.||.||.||.|||||.||.||||||||.|||||.||||||
BL00076___dna 797 AATGGGGATTGATCACTGACATCACGCCTCCTGATCTGGAAACAAGAATT 846
BSNT_00001___ 847 GCAATTTTAAGAAAAAAAGCCAAAGCAGAAGGCCTCGATATTCCGAACGA 896
||.|||||||||||.|||||.|||||||||||.||.|||||.|||||.||
BL00076___dna 847 GCGATTTTAAGAAAGAAAGCAAAAGCAGAAGGACTTGATATCCCGAATGA 896
BSNT_00001___ 897 GGTTATGCTTTACATCGCGAATCAAATCGACAGCAATATTCGGGAACTCG 946
.||.||||||||.||.||.|||||.||||||||||||||..||||.||.|
BL00076___dna 897 AGTCATGCTTTATATTGCCAATCAGATCGACAGCAATATCAGGGAGCTGG 946
BSNT_00001___ 947 AAGGAGCATTAATCAGAGTTGTCGCTTATTCATCTTTAATTAATAAAGAT 996
||||.|||||||||||.||||||||.|||||.||.||.||.||||||||.
BL00076___dna 947 AAGGGGCATTAATCAGGGTTGTCGCATATTCTTCCTTGATCAATAAAGAC 996
BSNT_00001___ 997 ATTAATGCTGATCTGGCCGCTGAGGCGTTGAAAGATATTATTCCTTCCTC 1046
|||||.||.||||||||.|||||.||.|||||||||||.||||||||.||
BL00076___dna 997 ATTAACGCCGATCTGGCTGCTGAAGCTTTGAAAGATATCATTCCTTCTTC 1046
BSNT_00001___ 1047 AAAACCGAAAGTCATTACGATAAAAGAAATTCAGAGGGTAGTAGGCCAGC 1096
|||.|||||||||||||||||.|||||.||.||.||..|.||.|||||||
BL00076___dna 1047 AAAGCCGAAAGTCATTACGATCAAAGACATCCAAAGAATCGTCGGCCAGC 1096
BSNT_00001___ 1097 AATTTAATATTAAACTCGAGGATTTCAAAGCAAAAAAACGGACAAAGTCA 1146
|.||||||||.||.||.|||||||||||.||.||.|||||||||||.||.
BL00076___dna 1097 AGTTTAATATCAAGCTGGAGGATTTCAAGGCGAAGAAACGGACAAAATCG 1146
BSNT_00001___ 1147 GTAGCTTTTCCGCGTCAAATCGCCATGTACTTATCAAGGGAAATGACTGA 1196
||.|||||||||||.||.|||||.|||||..|||||||.||||||||.||
BL00076___dna 1147 GTGGCTTTTCCGCGGCAGATCGCTATGTATCTATCAAGAGAAATGACAGA 1196
BSNT_00001___ 1197 TTCCTCTCTTCCTAAAATCGGTGAAGAGTTTGGAGGACGTGATCATACGA 1246
|||.||||||||.||.|||||.|||||.|||||.|||||.||.||.||||
BL00076___dna 1197 TTCTTCTCTTCCGAAGATCGGCGAAGAATTTGGCGGACGCGACCACACGA 1246
BSNT_00001___ 1247 CCGTTATTCATGCGCATGAAAAAATTTCGAAACTGCTG-GCAGATGATGA 1295
|.||.||.|||||.|||||.|||||.||.||||||||| || ||||||||
BL00076___dna 1247 CGGTCATCCATGCCCATGAGAAAATATCAAAACTGCTGAGC-GATGATGA 1295
BSNT_00001___ 1296 ACAGCTTCAGCAGCATGTAAAAGAAATTAAAGAACAGCTTAAATAG 1341
|||||||||||||||..|.||||||||||||||.|||||.|.|||.
BL00076___dna 1296 ACAGCTTCAGCAGCAGATTAAAGAAATTAAAGAGCAGCTGAGATAA 1341
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