Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04380 and BL00066
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:33
# Commandline: needle
# -asequence dna-align/BSNT_04380.1.5803.seq
# -bsequence dna-align/BL00066___opuD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04380-BL00066___opuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04380-BL00066___opuD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04380
# 2: BL00066___opuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1553
# Identity: 676/1553 (43.5%)
# Similarity: 676/1553 (43.5%)
# Gaps: 670/1553 (43.1%)
# Score: 2430.5
#
#
#=======================================
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 1 TTGAAAAATATTTCAAGCGTTTTTTGGATTGTGATTGTTATCACAGCAGC 50
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 51 AGCTGTATTATGGGGAATCGTTGCTCCGGATAACCTTCAGGCGTTAACGA 100
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 101 CTTCGATTCAAGGTTATGTTACAAACACACTCGGATGGTATTACTTATTG 150
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 151 GTGGTTTCTCTGTTTGTCGCATTCAGCATCTTTTTGATCTTCAGTCCGAT 200
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 201 TGGAAAGATCAGATTAGGGAAACCTGAAGAAAAACCTGAATTCTCTCGAT 250
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 251 TATCTTGGTTTGCCATGCTTTTTAGCGCAGGTATGGGCATTGGTCTCGTA 300
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 301 TTTTATGGCGCGGCTGAACCGATCAGCCATTATGCCATTAGCTCTCCATC 350
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 351 AGGTGAAACAGAAACAGCCCAGGCCTTCAGAGATTCTCTGAGGTATACAT 400
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 401 TTTTCCACTGGGGATTGCATGCTTGGGCGATCTATGCGATCGTTGCCCTT 450
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 451 TGCATCGCATACTTTCAATTCAGAAAAGACGCGCCTGGCTTGATCAGCGC 500
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 501 GACGCTGTTTCCGGTCTTCGGCGACAGAGTCAACGGACCGCTTGGAAAAG 550
BSNT_04380 0 -------------------------------------------------- 0
BL00066___opu 551 GGATTGACTGCATCGCTGTATTTGCAACCGTCGTCGGTGTAGCGACTAGT 600
BSNT_04380 1 ---------------------------------TTGAATTACCTGTTCGG 17
.|..||||.||.|||||
BL00066___opu 601 CTCGGAATCGGCGCCACGCAGATCAACGGCGGACTCCATTATCTATTCGG 650
BSNT_04380 18 CATTCCGAATGCGTTTATCGTCCAATTG--------GTTTTAATCATT-- 57
..|.||||| .|.|.||||..|| | ||||||
BL00066___opu 651 AGTGCCGAA------CAGCTTCCAGGTGCAGCTGGCG-----ATCATTGC 689
BSNT_04380 58 -ATTGTGACAGTGCTCTTTTTACTTTCTGCGTGGAGCGGACTCGGAAAAG 106
.|..|.||.||.||.||||||.||||.||.|||||||||.|||||||||
BL00066___opu 690 AGTCATCACCGTTCTGTTTTTAATTTCCGCTTGGAGCGGAATCGGAAAAG 739
BSNT_04380 107 GAATTAAGTATTTAAGCAACACAAACATGGTATTGGCCGGATTGTTAATG 156
|.||.||||||||.|||||.||.||||||||..|||||||..|..|.|||
BL00066___opu 740 GCATCAAGTATTTGAGCAATACGAACATGGTGCTGGCCGGCGTCCTGATG 789
BSNT_04380 157 TTGTTTATGCTCGTTGTCGGGCCTACAGTGCTGATCATGAACTCATTTAC 206
.|.||||||||..|||||||.||.||.|||.|.||.||||||||.|||||
BL00066___opu 790 ATCTTTATGCTGTTTGTCGGACCGACGGTGTTAATTATGAACTCGTTTAC 839
BSNT_04380 207 AGATTCTATCGGACAATACAT-TCAAAATATCGTTCAAATGAGCTTCAGA 255
.||..|.||||||...||.|| || .|||.|.||.||||||||||||.|.
BL00066___opu 840 GGACACGATCGGAACGTATATCTC-CAATGTGGTGCAAATGAGCTTCCGC 888
BSNT_04380 256 CTGACACCGAACGATCCTGAAAAACGCGAATGGATTAA--CAGCTGGACG 303
||..|.||.||.|||||.||.|..||.||||||||.|| || ||||||
BL00066___opu 889 CTTGCGCCTAATGATCCGGACAGCCGTGAATGGATCAATTCA--TGGACG 936
BSNT_04380 304 ATTTTCTATTGGGCATGGTGGATTTCCTGGTCTCCATTTGTCGGCATTTT 353
||||||||.|||||.||||||||.||||||||.||.||||||||.|||||
BL00066___opu 937 ATTTTCTACTGGGCTTGGTGGATCTCCTGGTCGCCGTTTGTCGGTATTTT 986
BSNT_04380 354 CATCGCCCGTGTATCCAGAGGCCGGACGATCCGAGAATTTTTAATTGGCG 403
|||||||||.|||||.||.||.||.||.|||.|.||||||||.||||.||
BL00066___opu 987 CATCGCCCGCGTATCAAGGGGGCGCACAATCAGGGAATTTTTGATTGCCG 1036
BSNT_04380 404 TCTTGGTGACACCTTGTATTTTGACATTTCTATGGTTCTCCATTTTCGGC 453
|||||.|..|.|||..|.|..||.|.|||||||||||.||.||||||||.
BL00066___opu 1037 TCTTGTTTGCGCCTACTGTGCTGGCGTTTCTATGGTTTTCAATTTTCGGG 1086
BSNT_04380 454 GTATCAGCCATGGATCTCCAGCAAAAAGGCACGTTCAATGTAGCAAAGCT 503
||.|||||.||||||||.|||||||||||.|..|||||.||.|||||.||
BL00066___opu 1087 GTTTCAGCGATGGATCTTCAGCAAAAAGGGATTTTCAACGTTGCAAAACT 1136
BSNT_04380 504 GTCCACTGAAACGATGCTGTTCGGAACACTTGATCACTATCCGCTGACAA 553
|||.||.||.|||||||||||.||||...||||.|||||.||||||.|.|
BL00066___opu 1137 GTCTACAGACACGATGCTGTTTGGAATGTTTGACCACTACCCGCTGGCTA 1186
BSNT_04380 554 TGGTGACATCGATCCTTGCATTGATTCTGATCGCAGTATTCTTTATCACG 603
||.|.|||||.|||.||||.|||.|.||.||.||.||||||||||||||.
BL00066___opu 1187 TGATTACATCTATCGTTGCCTTGTTGCTCATTGCCGTATTCTTTATCACT 1236
BSNT_04380 604 TCTGCTGATTCAGCTACATTCGTGCTGGGCATGCAGACGTCGTACGGTTC 653
|||||.||.||.||.|||||.||.||.||.|||||.|||.|.||||||||
BL00066___opu 1237 TCTGCAGACTCGGCAACATTTGTTCTCGGAATGCAAACGACTTACGGTTC 1286
BSNT_04380 654 TTTAAATCCGGCGAATTCTGT---GAAACTCAGCTGGGGTATCATTCAGT 700
..|.|||||.|.||||||.|| ||.| ||| |||||.|||||.||||
BL00066___opu 1287 ACTGAATCCTGAGAATTCGGTCAAGATA-TCA--TGGGGCATCATCCAGT 1333
BSNT_04380 701 CCGCCATGGCGGCTGTGCTCCTATATTCCGGAGGGCTTGCCGCTTTGCAG 750
|.||.|||||.|..|.||||||.|||||.||.||.||..|.||..||||.
BL00066___opu 1334 CAGCAATGGCTGGGGCGCTCCTGTATTCAGGCGGACTATCGGCGCTGCAA 1383
BSNT_04380 751 AACACAGCGATTCTGGCAGCGCTGCCGTTTTCTATCGTTATCCTGCTGAT 800
|||||.||.||.|||||.||.||||||||.||..||||..|..|.||.||
BL00066___opu 1384 AACACCGCCATCCTGGCCGCACTGCCGTTCTCAGTCGTCGTGATTCTCAT 1433
BSNT_04380 801 GATTGCCTCTCTCTATCAATCGCTCTCAAAAGAAAGAAGAGAGATCAAAA 850
|||||..||..|.|||.||||.||.|||.|||||.|||.||||||.|||.
BL00066___opu 1434 GATTGTATCGTTATATAAATCTCTGTCACAAGAACGAAAAGAGATTAAAC 1483
BSNT_04380 851 AAGCGGAGAAACTCGATAAACCGAGAAGTCCAAGAGTGAAAAAAGCATAT 900
||||.||||||.||.|.||.||.|||||.||.||.|||||||||||.||.
BL00066___opu 1484 AAGCCGAGAAATTCCAGAAGCCAAGAAGCCCGAGGGTGAAAAAAGCGTAA 1533
BSNT_04380 901 TAA 903
BL00066___opu 1533 --- 1533
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