Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04424 and BL00063
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:36
# Commandline: needle
# -asequence dna-align/BSNT_04424___yttA.1.5803.seq
# -bsequence dna-align/BL00063___yttA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04424___yttA-BL00063___yttA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04424___yttA-BL00063___yttA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04424___yttA
# 2: BL00063___yttA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 859
# Identity: 456/859 (53.1%)
# Similarity: 456/859 (53.1%)
# Gaps: 290/859 (33.8%)
# Score: 1030.5
#
#
#=======================================
BSNT_04424___ 1 ATGGAAATGGTAT-TAGCATTCTTA---GGTTTT----CTGGCATGTCTC 42
||||.|| ||.|||.||.| |||||| ||..|.|.|
BL00063___ytt 1 ------ATGGAATCTATCATGCTGATCGGGTTTTTATCCTTCCTTTT--- 41
BSNT_04424___ 43 ATTGCA-CTGGGCTATGGATTATATCACCTTG-TCA----GATATGTACT 86
||.|| || |||||....|||.||| .||| ||| |||.|.|.||
BL00063___ytt 42 -TTCCATCT--GCTATCTTGTATTTCA-TTTGATCAGAAGGATTTTTTCT 87
BSNT_04424___ 87 GAAAAAGGAAAAACGTTTCTCAAAGAGACTTTTTTGGCCGCTTTTCATTG 136
..|||.||||.|||| ||.|.||.|||.|||| ||
BL00063___ytt 88 ---CCAGGCAAAAGGTTT-TCCAGGAAACTCTTTT-----------AT-- 120
BSNT_04424___ 137 GAGGCCTTGTGCTGCTCTTTACCGGGGCAGCATTGGCAGA-------ACC 179
|||||| |||.|| |||.|| .||
BL00063___ytt 121 ----CCTTGT-------TTTGCC-----------GGCGGACTTCTCCTCC 148
BSNT_04424___ 180 TGA-CA-CTGCCGCAGCAAAT---GCCGAGAAAAAATATTCAGCGCTAAA 224
||| || || |.|||.|..|| |..|||.|||.||||.|
BL00063___ytt 149 TGATCATCT-CTGCACCTTATTACGATGAGGAAACATATGC--------- 188
BSNT_04424___ 225 CGCCGA--ATATAAAAAC-------CTCACAAAAGAGCACGAAGAACTTG 265
|||||| |.|.|||||| ||.||||..||||...|.|||||
BL00063___ytt 189 CGCCGATGAGAAAAAAACGGAGAATCTGACAACCGAGCTTCAGGAACT-- 236
BSNT_04424___ 266 AGAAA---GAATATAAATCTGTCAGCTCT--------GAAGCAAA--GAA 302
|||| |||.| ||||.|| |.|||||| | .
BL00063___ytt 237 -GAAAACTGAACA---------CAGCGCTTTGCAAAAGGAGCAAACCG-C 275
BSNT_04424___ 303 ATTAAAAGACAACAAAGAAGATCAAGACAAGCTTGAGAAGCTTAAAAAC- 351
|||||| ..||.||.|||| |||.|| ||.| .||||||
BL00063___ytt 276 ATTAAA-------GCAGCAGGTCAA-ACAGGC-----AAAC-AAAAAACT 311
BSNT_04424___ 352 GAA-------AATAGCG-----------ATCTAAAAAAGACTCAGAAATC 383
||| || |||| || ||||||| |||||
BL00063___ytt 312 GAAGGCAGTCAA-AGCGGAGAATGACACAT-TAAAAAA-----AGAAA-- 352
BSNT_04424___ 384 ATTAAAAGCTGAGATTAAAGA---------GCTT-CAAGAAAATCAAAAG 423
|..||||.||||.| ||||| |||| |.|.||||.|||||.
BL00063___ytt 353 ACGAAAAACTGACA--AAAGAAAAAGATTCGCTTACGAAAAAAACAAAAT 400
BSNT_04424___ 424 CAGCTCAAAGAAGATGCAAAAAC-GGCAAAGGCTGAAAATGAAA----CA 468
| |||.|.|| |||||| |||.|||||||||.|..||| ||
BL00063___ytt 401 C-GCTGACAG-------AAAAACTGGCCAAGGCTGAAGAAAAAAGCGGCA 442
BSNT_04424___ 469 CT-CCGACAAGATAAAACAAAGCT-TG-AAAATCAATTAAAAGAGACGGA 515
.| ||| |||.|| || |||| .||||||| ||
BL00063___ytt 443 GTGCCG------------AAACCTCTGTAAAA-----GAAAAGAG-CG-- 472
BSNT_04424___ 516 AAGCCAAACCGCCAGTTCTCATGAAGACACTGGAAGTTCTTCAAACAATA 565
||||| .||||.| ..|||| |.|||.|||..|
BL00063___ytt 473 --------CCGCC---GCTCAGG-------CCGAAG--CGTCACACAGCA 502
BSNT_04424___ 566 CG----------AGTAAA--AGTGATGAAACCAAAACAGCTGACAAAGCA 603
|| ||.||| ||.|.|||||.|||| ||
BL00063___ytt 503 CGCCCGCCGCCAAGAAAAGCAGCGCTGAAAGCAAA-------------CA 539
BSNT_04424___ 604 GAAGGCTGTAATATCAAAGGAAGCAAAAACGGCATCTACCACACGCCAGG 653
|.|| ||.||.||||||||||||...|||...||.||.||.||.||.||
BL00063___ytt 540 GGAG--TGCAAAATCAAAGGAAGCGTCAACCATATTTATCATACACCGGG 587
BSNT_04424___ 654 CAGTACATACTACGACCGGAC----AAC--CGATCCGGCTGAAATGTTTT 697
|||||||||.||.|||||.|| ||| ||.|| |||| |||.|
BL00063___ytt 588 CAGTACATATTATGACCGCACGAAAAACGTCGCTC--GCTG----GTTCT 631
BSNT_04424___ 698 GCTCAGTTGAAGAAGCTGAAGCCGCCGGTTAT-CGGG--------CGCCA 738
||.||| |.|.|.||.||| ||.|| |||| |||||
BL00063___ytt 632 GCACAG-------AACAGGAGGCGC--GTGATGCGGGGTACAGACCGCCA 672
BSNT_04424___ 739 AAACGATAA 747
|||||.|||
BL00063___ytt 673 AAACGTTAA 681
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