Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04335 and BL00053
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_04335___ytxH.1.5803.seq
# -bsequence dna-align/BL00053___ytxH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04335___ytxH-BL00053___ytxH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04335___ytxH-BL00053___ytxH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04335___ytxH
# 2: BL00053___ytxH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 479
# Identity: 296/479 (61.8%)
# Similarity: 296/479 (61.8%)
# Gaps: 82/479 (17.1%)
# Score: 907.0
#
#
#=======================================
BSNT_04335___ 1 ATGATGAGCAAAGATGGAATTAATAGTAAAGATTTTTTAATCGGAACTTT 50
|||||.|||||.|||||.||||.|||.||||||||||||||.||.||
BL00053___ytx 1 ---ATGAGTAAAGACGGAATGAATACTAAGGATTTTTTAATCGGCACGTT 47
BSNT_04335___ 51 AATCGGGGGAATCATCGGTGCCACTACAGCTCTTTTTCTAGCGCCTAAAT 100
..|.||.|||||||||||.||..||.|||||.|.|||.|||||||.||.|
BL00053___ytx 48 TGTAGGCGGAATCATCGGGGCGGCTGCAGCTTTATTTTTAGCGCCGAAGT 97
BSNT_04335___ 101 CAGGCAAAGAACTTCGCGACGATCTCGGCAGCCAGGCTGTTGCTTTACGG 150
|.||.|||||.||||||||.||.||.||.|..|||||.||.|.||||..|
BL00053___ytx 98 CGGGGAAAGAGCTTCGCGATGACCTTGGAAATCAGGCCGTCGTTTTAAAG 147
BSNT_04335___ 151 GACAAAACTGATAAAATGAC-GGCAGATGCGAAGGAAAAAGGCACGCAAT 199
||.||.||.|..||..|.|| .|| ||.||||.|||.|.||||.|..|.|
BL00053___ytx 148 GATAAGACCGGAAAGCTCACAAGC-GAAGCGAGGGAGAGAGGCTCTGAGT 196
BSNT_04335___ 200 ATGTCAGCATCGCAAAAGACAAAACTTCCAACATCACACAGCTTGTAGCG 249
|.|||||||||||.|||||.||.||.||....||..||||||||||.||.
BL00053___ytx 197 ACGTCAGCATCGCCAAAGAGAAGACATCTTCGATTTCACAGCTTGTTGCC 246
BSNT_04335___ 250 GATCAGTCTGGGCAGATCATGAACAAGGTGAAGGATTT---AAGAGACCG 296
||.||||||...|||||.|||.|.||.||.||.||.|| |||..|..|
BL00053___ytx 247 GACCAGTCTTCACAGATTATGGATAAAGTCAAAGACTTGCGAAGCAAGGG 296
BSNT_04335___ 297 TTC---TAAATCTG----ATAAAACG--GATTCATCGACTGCAATGCAAG 337
|.| .|||.||| |..|||.| ||..|||||.|||||||
BL00053___ytx 297 TGCCGAAAAAGCTGGTGAACTAAAGGAAGAAGCATCGTCTGCAAT----- 341
BSNT_04335___ 338 ATATGAGGGAAGAAGCGATGCAGGCGGCTGATGAAACAAAAGATCAAGTC 387
.|||||| || ||||||.|||.|.|||.||.||
BL00053___ytx 342 -------CGAAGAA------CA---GGCTGAAGAAGCCAAAAATGAA--- 372
BSNT_04335___ 388 CTCCAGACGAAAGAAGATGTAAAAGACGAACTGAAAGATGCACAAAAACA 437
|.||||||||.| |.||| .|||||
BL00053___ytx 373 ---------ATAGAAGATGAA-----------GCAAG------GAAAAC- 395
BSNT_04335___ 438 GGCTGAGCAGTTGAATCGCTGA------- 459
|||||.| |.||||.|
BL00053___ytx 396 -----AGCAGAT--ACCGCTCAGAAATAA 417
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