Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04358 and BL00042
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_04358___trmB.1.5803.seq
# -bsequence dna-align/BL00042___trmB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04358___trmB-BL00042___trmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04358___trmB-BL00042___trmB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04358___trmB
# 2: BL00042___trmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 651
# Identity: 486/651 (74.7%)
# Similarity: 486/651 (74.7%)
# Gaps: 18/651 ( 2.8%)
# Score: 1757.0
#
#
#=======================================
BSNT_04358___ 1 ATGAGAATGCGCCACAAGCCTTGGGCTGATGACTTTTTGGCTGAAAACGC 50
|||.|||||||.||||||||.|||||.|||||||...|||||||||||.|
BL00042___trm 1 ATGCGAATGCGTCACAAGCCATGGGCGGATGACTACCTGGCTGAAAACTC 50
BSNT_04358___ 51 AGATATTTCCATCAGCAATCCTGCTGATTATAAAGGGAAATGGAACACAG 100
..|||||...||||||.|.||..||.|.||.||||||||||||.|..|.|
BL00042___trm 51 TCATATTGTGATCAGCGAGCCGTCTCAATACAAAGGGAAATGGCATTCCG 100
BSNT_04358___ 101 TGTTTGGCAACGACAATCCGATCCATATCGAGGTTGGTACAGGAAAAGGC 150
|.|||||.||.|||||.||||||||.|||||.||.||.||.||||||||.
BL00042___trm 101 TTTTTGGAAATGACAACCCGATCCACATCGAAGTAGGAACCGGAAAAGGG 150
BSNT_04358___ 151 CAATTTATTTCTGGTATGGCCAAACAAAATCCCGACATCAATTATATTGG 200
|||||||||||.||.||||||...|||||.||.||..|.||.|||||.||
BL00042___trm 151 CAATTTATTTCAGGAATGGCCCTGCAAAACCCGGATGTAAACTATATCGG 200
BSNT_04358___ 201 TATTGAGTTATTTAAAAGCGTCATCGTGACAGCCGTCCAAAAAGTAAA-- 248
.||.||..|||||||||||||||||||.||.||.||..|.||||||||
BL00042___trm 201 AATCGAACTATTTAAAAGCGTCATCGTAACCGCTGTTGATAAAGTAAAGC 250
BSNT_04358___ 249 AGACAGCGAAGCGCAGAATGTAAAGCTTCTGAATATAGATGCGGACACGC 298
||||| ||.||||.||||||||||||..||||.||..||||..|.|.||
BL00042___trm 251 AGACA--GAGGCGCCGAATGTAAAGCTCTTGAACATCAATGCCAATATGC 298
BSNT_04358___ 299 TGACGGATGTGTTTG-AGCCGGGGGAAGTGAAACGGGTCTACTTGAACTT 347
|..|.||.||.|||| ||.| ||||||||..|.||||||||.|||||.||
BL00042___trm 299 TTTCAGACGTTTTTGCAGAC-GGGGAAGTCGACCGGGTCTATTTGAATTT 347
BSNT_04358___ 348 TTCTGATCCTTGGCCGAAGAAACGGCATGAAAAACGCCGCCTGACATATT 397
|||.||.||.||||||||.||.||.||||||||.|||||.||.||..||
BL00042___trm 348 TTCCGACCCGTGGCCGAAAAAGCGCCATGAAAAGCGCCGTCTTACCAAT- 396
BSNT_04358___ 398 CCCA---CTTCCTCAAAAAATATGAAGAAGTAATGGGCAAAGGC---GGA 441
|| .|||.|.|||||.|||||..|.||..|.|| |||| |||
BL00042___trm 397 --CATGCGTTCTTGAAAAAGTATGAGCAGGTGCTCGG---AGGCAAGGGA 441
BSNT_04358___ 442 TCGATTCATTTTAAAACGGACAACCGAGGTTTGTTTGAGTACTCTTTGAA 491
.||||||||||||||||.||.|||||.||.||||||||||||||..|.|.
BL00042___trm 442 GCGATTCATTTTAAAACCGATAACCGCGGGTTGTTTGAGTACTCCCTCAC 491
BSNT_04358___ 492 GAGCTTCTCTGAGTACGGCCTCCTGCTGACATACGTCAGCCTCGATTTGC 541
.||.||.||.||.|||||.|||.|..||||||.|||||||||.||..|||
BL00042___trm 492 CAGTTTTTCCGAATACGGACTCGTTTTGACATTCGTCAGCCTTGACCTGC 541
BSNT_04358___ 542 ATAACAGCAATCTCGAAGGCAATATTATGACAGAATATGAAGAAAAATTC 591
||.|.|||.||.|.|||||.|||.|.|||||.|||||.||||||||.|||
BL00042___trm 542 ATCAAAGCGATTTTGAAGGAAATGTGATGACCGAATACGAAGAAAAGTTC 591
BSNT_04358___ 592 TCTGCACTCGGCCAGCCGATCTATCGGGCTGAGGTTGAATGGAGAACGTA 641
.|.||....||||||||||||||..|.|..||.|.|||||||.||||.||
BL00042___trm 592 GCCGCTAAAGGCCAGCCGATCTACAGAGTCGAAGCTGAATGGCGAACATA 641
BSNT_04358___ 642 A 642
|
BL00042___trm 642 A 642
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