Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04362 and BL00041

See Amino acid alignment / Visit BSNT_04362 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:31
# Commandline: needle
#    -asequence dna-align/BSNT_04362___ytmP.1.5803.seq
#    -bsequence dna-align/BL00041___ytmP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04362___ytmP-BL00041___ytmP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04362___ytmP-BL00041___ytmP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04362___ytmP
# 2: BL00041___ytmP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 871
# Identity:     589/871 (67.6%)
# Similarity:   589/871 (67.6%)
# Gaps:         128/871 (14.7%)
# Score: 2061.0
# 
#
#=======================================

BSNT_04362___      1 ------------ATGAACTGGTTGGGACAATTACTAGGTAGCGATTGGGA     38
                                 ||||||||||||||||||||||||||||||||.|||||
BL00041___ytm      1 TTGAAAATCGATATGAACTGGTTGGGACAATTACTAGGTAGCGAATGGGA     50

BSNT_04362___     39 GATCTTCCCCGCCGGAGGAGCTACAGGAGATGCATATTATGCGAAACATA     88
                     |||.|.||||||.|||||||||||||||||.|||||||||||..||||||
BL00041___ytm     51 GATTTCCCCCGCAGGAGGAGCTACAGGAGACGCATATTATGCAGAACATA    100

BSNT_04362___     89 ACGGGCAGCAGCTTTTTTTAAAACGTAATAGCTCACCTTTTTTAGCTGTT    138
                     |.||.|||||||||||||||||.||.||.|||||.||||||||.|||||.
BL00041___ytm    101 ATGGACAGCAGCTTTTTTTAAAGCGCAACAGCTCTCCTTTTTTGGCTGTC    150

BSNT_04362___    139 TTATCCGCCGAAGGCATTGTTCCGAAGCTGGTTTGGACAAAACGGATGGA    188
                     .|.|||||.|||||.||||||||.|||||.||||||||||||||.|||||
BL00041___ytm    151 CTGTCCGCGGAAGGAATTGTTCCTAAGCTCGTTTGGACAAAACGAATGGA    200

BSNT_04362___    189 AAATGGGGACGTCATTACGGCCCAGCACTGGATGACCGGCAGAGAGCTGA    238
                     |||.|||||.||.||||||||.|||||||||.|.|..||.||||||||||
BL00041___ytm    201 AAACGGGGATGTGATTACGGCACAGCACTGGCTCAAGGGAAGAGAGCTGA    250

BSNT_04362___    239 AGCCTAAAGACATGAGCGGACGGCCCGTTGCTGAATTGCTTCGTAAAATA    288
                     ||||.||.||.||||.|.|.|.|.|.||.|||||..|||||||.|||||.
BL00041___ytm    251 AGCCGAAGGATATGAACAGCCAGGCGGTGGCTGAGATGCTTCGGAAAATT    300

BSNT_04362___    289 CACACATCGAA--AGCCTTGCTGGACATGCTGAAGAGACTTGGAAAAGAA    336
                     ||||..||.||  |||.||  ||||.||||||||||||||.||.|||.|.
BL00041___ytm    301 CACAGCTCCAAAGAGCTTT--TGGATATGCTGAAGAGACTCGGCAAACAG    348

BSNT_04362___    337 CCGCTGAACCCGGGGGCTCTTT--TGTCTCAGCTGAAGCAGGCTGTATTT    384
                     ||..|..|.||  ..|||||.|  |..||||..||||||||      |||
BL00041___ytm    349 CCTTTTCAGCC--AAGCTCTGTAATCACTCAATTGAAGCAG------TTT    390

BSNT_04362___    385 ------GCTGTGCAGCAATCTTCG---CCGCTGATTCAAGAAGGGATCA-    424
                           ||   .|.|||||.|.||   ||||.|.|        |||.|| 
BL00041___ytm    391 ATCCAGGC---CCGGCAATATCCGATACCGCAGCT--------GGACCAG    429

BSNT_04362___    425 -------AGTATTTGGAAGAACACCTGCATGAAGTGCATTTCGGTGAGAA    467
                            .||||.||||..|.||.||..|.||.||.||.|.|||.||.||
BL00041___ytm    430 GCCCTTTTGTATCTGGAGCACCATCTTGAAGATGTACAGTCCGGAGAAAA    479

BSNT_04362___    468 AGTCGTTTGCCATTGTGATGTCAATCATAATAACTGGCTATTGTCT----    513
                     .|||||.||.||.||.|||||||||||||||||.|||||    |||    
BL00041___ytm    480 GGTCGTCTGTCACTGCGATGTCAATCATAATAATTGGCT----TCTTACA    525

BSNT_04362___    514 GAAGACAACCAGCTGTATTTAATTGACTGGGACGGCGCCATGATCGCTGA    563
                     ||..|.||||||||.||||||||.||.|||||.||.||.|||||.||.||
BL00041___ytm    526 GATCAGAACCAGCTTTATTTAATCGATTGGGATGGAGCGATGATTGCAGA    575

BSNT_04362___    564 TCCGGCGATGGACCTCGGGCCTTTGCTGTACCACTACGTCGAAAAGCCAG    613
                     .||.|||||.||.||.|||||..|.||.||.||.|||||.|||.|||..|
BL00041___ytm    576 CCCCGCGATCGATCTGGGGCCGCTTCTTTATCATTACGTTGAAGAGCGGG    625

BSNT_04362___    614 CTTGGGAGAGCTGGCT-GA--GCATGTACGGC----ATAGAGCTGACAGA    656
                     ..||||..|||||||| ||  ||   ||||||    .|    ||.|||||
BL00041___ytm    626 AATGGGGAAGCTGGCTCGAACGC---TACGGCTCTTCT----CTTACAGA    668

BSNT_04362___    657 AAGCCTTCGGTTGCGAATGGCTTGGTATGTGTTATCTGAAA---CAATTA    703
                     .|..||..||.||.|||||||.|||||.||.||..|.||||   ||||.|
BL00041___ytm    669 CAATCTCAGGCTGAGAATGGCCTGGTACGTATTGGCGGAAAAAGCAATGA    718

BSNT_04362___    704 CTTTCATTGCCTGGCATAAAGCAAAAGGCAATGATAAGGAA---TTTCAT    750
                     | ..||.|  ||||||.|||||.|||||||   ||.|||||   |||||.
BL00041___ytm    719 C-GACACT--CTGGCAAAAAGCGAAAGGCA---ATCAGGAAGGCTTTCAC    762

BSNT_04362___    751 GATGCAATGGAAGAGCTGCAT-----------------------ATCCTC    777
                     .|.|...|||||.||||||||                       .|||||
BL00041___ytm    763 CAGGGGCTGGAACAGCTGCATGAATTAATGGAGCGTCTCGCCAGGTCCTC    812

BSNT_04362___    778 ATGAAACGAATTGTTGATTAA    798
                     ||||                 
BL00041___ytm    813 ATGA-----------------    816


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04362 and BL00041

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
