Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04364 and BL00039
See
Amino acid alignment /
Visit
BSNT_04364 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_04364___ytlR.1.5803.seq
# -bsequence dna-align/BL00039___ytlR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04364___ytlR-BL00039___ytlR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04364___ytlR-BL00039___ytlR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04364___ytlR
# 2: BL00039___ytlR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1025
# Identity: 612/1025 (59.7%)
# Similarity: 612/1025 (59.7%)
# Gaps: 199/1025 (19.4%)
# Score: 1544.0
#
#
#=======================================
BSNT_04364___ 1 ATGAGCCATTGGTTTTTTATTATTAATCCGACAGCAGGACA-TCGAAACG 49
||||||.||||||.|.|.||.||.|||||.|..||.|||.| ||| |||
BL00039___ytl 1 ATGAGCGATTGGTATATCATCATAAATCCAAAGGCGGGAAACTCG--ACG 48
BSNT_04364___ 50 GCCTGC-GTGTTTGGAAGTCCATT-CAAAAAGAATTGATCAAACG--AAA 95
||||.| |.|..|||||.| |||| ||.|||||..| .||||.| |||
BL00039___ytl 49 GCCTTCAGAGCATGGAAAT-CATTGCAGAAAGACCT--CCAAAAGGCAAA 95
BSNT_04364___ 96 GGTTGAGCACCGTTCATTTTTAACTGAACATCCGGGACACGCCGAGGTGC 145
..|...|.||||.||.|||.|.|||.|.|||||.||.||.||.||||||.
BL00039___ytl 96 TATATCGTACCGCTCGTTTATGACTCAGCATCCCGGGCATGCTGAGGTGT 145
BSNT_04364___ 146 TCGCCAGACAGATTTCAACGATACAGGAATATAAGCTGAAGCGCCTGATC 195
|.||.||.||.||.||||||||.|||||..|.|.|||||||||.||..|.
BL00039___ytl 146 TGGCAAGGCAAATATCAACGATGCAGGATGACAGGCTGAAGCGTCTTCTG 195
BSNT_04364___ 196 GTCATTGGCGGAGACGGAACCATGCATGAAGTTGTCAACGG--------G 237
||.||.|||||.||.||||||.|.||||||||..||||.|| |
BL00039___ytl 196 GTGATCGGCGGGGATGGAACCGTCCATGAAGTGCTCAATGGTTTAGTCAG 245
BSNT_04364___ 238 CTGAAAGATGTTGACGATATTGAGCTGAGCTTTGTGCCGGCGGGCGCATA 287
|| ||..| ||.|||.||||||||.|..|.|||.|.| |||||
BL00039___ytl 246 CT------TGCGG--GACATTCAGCTGAGCGTCATCCCGTCAG--GCATA 285
BSNT_04364___ 288 --TAATGATTTTTCGCGAGGATTCTCTAT----TAAAAAAATCG-ATCTG 330
.|||||||||...||.|| ||.| |.||||||||| ||.|.
BL00039___ytl 286 AGCAATGATTTTAAACGCGG-----CTTTGGCGTGAAAAAATCGAATGTC 330
BSNT_04364___ 331 ATACAGGAAATCAAG----AAGGTAAAGCGCCCGTTAACAAGAACCTTTC 376
||..|.|||||.||| ||||..||.||| |.||..|.||||.|.
BL00039___ytl 331 ATCAAAGAAATGAAGCGAAAAGGGCAATCGC----TGACCCGGACCTATG 376
BSNT_04364___ 377 ATTTAGGGAGCGTCAATTTCCTTCAGGATA--AATCACAGATT------- 417
...|.||.||| |||| ||| ||..|||| |
BL00039___ytl 377 CCCTCGGAAGC-----TTTC-------ATACGAAAGACAG--TGAAAACG 412
BSNT_04364___ 418 --CTTTATTTTATGAATCATATCGGGATCGGGTTTGACGCAT---ATGTC 462
|||||||||..|||||||.||.|..||||.|||||.|||| ..|.|
BL00039___ytl 413 AACTTTATTTTGCGAATCATCTCAGCCTCGGATTTGATGCATGCACCGCC 462
BSNT_04364___ 463 AATAAAAAGGCGATG---GAATTTCCG--TTGAGACGGGTTTTTCTTTTT 507
||.|| |||| |..||.||| .|| ||||| .|..|
BL00039___ytl 463 AAGAA------GATGTCAGCTTTGCCGAAATG-GACGG-------CTGCT 498
BSNT_04364___ 508 CTCCG-------CCTTCGATTTCTTGTGTATCCGCT--TTCTCATTTG-C 547
|||.| |.||.|||| .||||||| ||.|| |||| |
BL00039___ytl 499 CTCAGGCTGAATCATTTGATT-------CATCCGCTGATTTTC-TTTGTC 540
BSNT_04364___ 548 ACGCTTCGGCAACCTTTAAGCCGTTTACGTTAGCTT--GTACGA-----C 590
||| .||...||.|||||.|||||| ||| ||| |||.|| .
BL00039___ytl 541 ACG--GCGTTTACGTTTAAACCGTTT--GTT--CTTTCGTATGAAAACGG 584
BSNT_04364___ 591 GGAAGACGAGACGCGCGAATTTCATGATGTCTGGTTTGCGGTTGTATCCA 640
|||.|||.|| ||..|| |||.|..|..|||||||||||...||.||.|
BL00039___ytl 585 GGATGACAAG-CGTACG--TTTAAAAAAATCTGGTTTGCGTCGGTTTCAA 631
BSNT_04364___ 641 ACCATCCGTTTTACGGGGGAGGCATGAAGGCGGCGCCCCTAGCAAATCCG 690
|.|||||.|..||.||.|||||.||||||...||.||....||.||||||
BL00039___ytl 632 ATCATCCTTACTATGGCGGAGGAATGAAGATTGCACCGAATGCGAATCCG 681
BSNT_04364___ 691 CGCGAGAAGACATTT-GATATCGTAATC---GTTGAAAACCAGCCGTTTT 736
||.||..|| |.||| || |||.||| .|||||.|||.|||..|.|
BL00039___ytl 682 CGGGATGAG-CTTTTAGA---CGTGATCATTATTGAAGACCTGCCCGTCT 727
BSNT_04364___ 737 TGAAAAAA-------TATTGGCTTTTATGTCTCATGGCATTTGGAAAACA 779
|||||||| |.||| |||..| |||..|||.||.|||||
BL00039___ytl 728 TGAAAAAAGCCGGCCTCTTG---TTTGCG----ATGATATTCGGCAAACA 770
BSNT_04364___ 780 ----TACAAAGATGGATGGCGTTACGATGTTTAAAGCGAAGGACATTAC- 824
..|||| .|.||.||||||...|||||..||||.||||| |
BL00039___ytl 771 CGTCGGCAAA----AACGGTGTTACGGCATTTAAGACGAAAGACAT--CT 814
BSNT_04364___ 825 ATTTT-ACACGAAGGACAAAATCCCG-------TTCCATGCTGACGGAGA 866
||||| |.|||||.|| .|| ||.||.||.||.|||||
BL00039___ytl 815 ATTTTCATACGAATGA-------GCGGGTGCTCTTTCAAGCGGATGGAGA 857
BSNT_04364___ 867 ATTCA-----TGGGCACTACCCCGTTTCGTCTGGCATCTA------GTCC 905
..|.| ||||| .||||||| .||| || |..|
BL00039___ytl 858 GGTGATCGGCTGGGC----GCCCGTTT------TCAT-TAAAACAGGGAC 896
BSNT_04364___ 906 TTCACCCCTAAGAATCAAAACATAA 930
|..|.||||..||.|.|.|.|||||
BL00039___ytl 897 TGAATCCCTTCGATTAAGAGCATAA 921
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.