Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04364 and BL00039

See Amino acid alignment / Visit BSNT_04364 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:31
# Commandline: needle
#    -asequence dna-align/BSNT_04364___ytlR.1.5803.seq
#    -bsequence dna-align/BL00039___ytlR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04364___ytlR-BL00039___ytlR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04364___ytlR-BL00039___ytlR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04364___ytlR
# 2: BL00039___ytlR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1025
# Identity:     612/1025 (59.7%)
# Similarity:   612/1025 (59.7%)
# Gaps:         199/1025 (19.4%)
# Score: 1544.0
# 
#
#=======================================

BSNT_04364___      1 ATGAGCCATTGGTTTTTTATTATTAATCCGACAGCAGGACA-TCGAAACG     49
                     ||||||.||||||.|.|.||.||.|||||.|..||.|||.| |||  |||
BL00039___ytl      1 ATGAGCGATTGGTATATCATCATAAATCCAAAGGCGGGAAACTCG--ACG     48

BSNT_04364___     50 GCCTGC-GTGTTTGGAAGTCCATT-CAAAAAGAATTGATCAAACG--AAA     95
                     ||||.| |.|..|||||.| |||| ||.|||||..|  .||||.|  |||
BL00039___ytl     49 GCCTTCAGAGCATGGAAAT-CATTGCAGAAAGACCT--CCAAAAGGCAAA     95

BSNT_04364___     96 GGTTGAGCACCGTTCATTTTTAACTGAACATCCGGGACACGCCGAGGTGC    145
                     ..|...|.||||.||.|||.|.|||.|.|||||.||.||.||.||||||.
BL00039___ytl     96 TATATCGTACCGCTCGTTTATGACTCAGCATCCCGGGCATGCTGAGGTGT    145

BSNT_04364___    146 TCGCCAGACAGATTTCAACGATACAGGAATATAAGCTGAAGCGCCTGATC    195
                     |.||.||.||.||.||||||||.|||||..|.|.|||||||||.||..|.
BL00039___ytl    146 TGGCAAGGCAAATATCAACGATGCAGGATGACAGGCTGAAGCGTCTTCTG    195

BSNT_04364___    196 GTCATTGGCGGAGACGGAACCATGCATGAAGTTGTCAACGG--------G    237
                     ||.||.|||||.||.||||||.|.||||||||..||||.||        |
BL00039___ytl    196 GTGATCGGCGGGGATGGAACCGTCCATGAAGTGCTCAATGGTTTAGTCAG    245

BSNT_04364___    238 CTGAAAGATGTTGACGATATTGAGCTGAGCTTTGTGCCGGCGGGCGCATA    287
                     ||      ||..|  ||.|||.||||||||.|..|.|||.|.|  |||||
BL00039___ytl    246 CT------TGCGG--GACATTCAGCTGAGCGTCATCCCGTCAG--GCATA    285

BSNT_04364___    288 --TAATGATTTTTCGCGAGGATTCTCTAT----TAAAAAAATCG-ATCTG    330
                       .|||||||||...||.||     ||.|    |.||||||||| ||.|.
BL00039___ytl    286 AGCAATGATTTTAAACGCGG-----CTTTGGCGTGAAAAAATCGAATGTC    330

BSNT_04364___    331 ATACAGGAAATCAAG----AAGGTAAAGCGCCCGTTAACAAGAACCTTTC    376
                     ||..|.|||||.|||    ||||..||.|||    |.||..|.||||.|.
BL00039___ytl    331 ATCAAAGAAATGAAGCGAAAAGGGCAATCGC----TGACCCGGACCTATG    376

BSNT_04364___    377 ATTTAGGGAGCGTCAATTTCCTTCAGGATA--AATCACAGATT-------    417
                     ...|.||.|||     ||||       |||  ||..||||  |       
BL00039___ytl    377 CCCTCGGAAGC-----TTTC-------ATACGAAAGACAG--TGAAAACG    412

BSNT_04364___    418 --CTTTATTTTATGAATCATATCGGGATCGGGTTTGACGCAT---ATGTC    462
                       |||||||||..|||||||.||.|..||||.|||||.||||   ..|.|
BL00039___ytl    413 AACTTTATTTTGCGAATCATCTCAGCCTCGGATTTGATGCATGCACCGCC    462

BSNT_04364___    463 AATAAAAAGGCGATG---GAATTTCCG--TTGAGACGGGTTTTTCTTTTT    507
                     ||.||      ||||   |..||.|||  .|| |||||       .|..|
BL00039___ytl    463 AAGAA------GATGTCAGCTTTGCCGAAATG-GACGG-------CTGCT    498

BSNT_04364___    508 CTCCG-------CCTTCGATTTCTTGTGTATCCGCT--TTCTCATTTG-C    547
                     |||.|       |.||.||||       .|||||||  ||.|| |||| |
BL00039___ytl    499 CTCAGGCTGAATCATTTGATT-------CATCCGCTGATTTTC-TTTGTC    540

BSNT_04364___    548 ACGCTTCGGCAACCTTTAAGCCGTTTACGTTAGCTT--GTACGA-----C    590
                     |||  .||...||.|||||.||||||  |||  |||  |||.||     .
BL00039___ytl    541 ACG--GCGTTTACGTTTAAACCGTTT--GTT--CTTTCGTATGAAAACGG    584

BSNT_04364___    591 GGAAGACGAGACGCGCGAATTTCATGATGTCTGGTTTGCGGTTGTATCCA    640
                     |||.|||.|| ||..||  |||.|..|..|||||||||||...||.||.|
BL00039___ytl    585 GGATGACAAG-CGTACG--TTTAAAAAAATCTGGTTTGCGTCGGTTTCAA    631

BSNT_04364___    641 ACCATCCGTTTTACGGGGGAGGCATGAAGGCGGCGCCCCTAGCAAATCCG    690
                     |.|||||.|..||.||.|||||.||||||...||.||....||.||||||
BL00039___ytl    632 ATCATCCTTACTATGGCGGAGGAATGAAGATTGCACCGAATGCGAATCCG    681

BSNT_04364___    691 CGCGAGAAGACATTT-GATATCGTAATC---GTTGAAAACCAGCCGTTTT    736
                     ||.||..|| |.||| ||   |||.|||   .|||||.|||.|||..|.|
BL00039___ytl    682 CGGGATGAG-CTTTTAGA---CGTGATCATTATTGAAGACCTGCCCGTCT    727

BSNT_04364___    737 TGAAAAAA-------TATTGGCTTTTATGTCTCATGGCATTTGGAAAACA    779
                     ||||||||       |.|||   |||..|    |||..|||.||.|||||
BL00039___ytl    728 TGAAAAAAGCCGGCCTCTTG---TTTGCG----ATGATATTCGGCAAACA    770

BSNT_04364___    780 ----TACAAAGATGGATGGCGTTACGATGTTTAAAGCGAAGGACATTAC-    824
                         ..||||    .|.||.||||||...|||||..||||.|||||  | 
BL00039___ytl    771 CGTCGGCAAA----AACGGTGTTACGGCATTTAAGACGAAAGACAT--CT    814

BSNT_04364___    825 ATTTT-ACACGAAGGACAAAATCCCG-------TTCCATGCTGACGGAGA    866
                     ||||| |.|||||.||       .||       ||.||.||.||.|||||
BL00039___ytl    815 ATTTTCATACGAATGA-------GCGGGTGCTCTTTCAAGCGGATGGAGA    857

BSNT_04364___    867 ATTCA-----TGGGCACTACCCCGTTTCGTCTGGCATCTA------GTCC    905
                     ..|.|     |||||    .|||||||      .||| ||      |..|
BL00039___ytl    858 GGTGATCGGCTGGGC----GCCCGTTT------TCAT-TAAAACAGGGAC    896

BSNT_04364___    906 TTCACCCCTAAGAATCAAAACATAA    930
                     |..|.||||..||.|.|.|.|||||
BL00039___ytl    897 TGAATCCCTTCGATTAAGAGCATAA    921


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