Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04366 and BL00038
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_04366___ytlQ.1.5803.seq
# -bsequence dna-align/BL00038___ytlQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04366___ytlQ-BL00038___ytlQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04366___ytlQ-BL00038___ytlQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04366___ytlQ
# 2: BL00038___ytlQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1040
# Identity: 626/1040 (60.2%)
# Similarity: 626/1040 (60.2%)
# Gaps: 223/1040 (21.4%)
# Score: 1734.0
#
#
#=======================================
BSNT_04366___ 1 ATGGCACAAATCATCAAAATTCATGATTATATATCAAGATATGAGCTTGA 50
||||||||.||.||.|||||.||.||.|.|||.|||||.|||||.|..||
BL00038___ytl 1 ATGGCACAGATTATTAAAATACAGGACTGTATTTCAAGGTATGAACAAGA 50
BSNT_04366___ 51 TCCGTACCATTATATCAACCAGTTTGTACGTCTGAAAAAAGAGCGCTGGC 100
|||.||.||||||||||||||||||.|.||..|||||||..|||||||||
BL00038___ytl 51 TCCTTATCATTATATCAACCAGTTTATCCGCTTGAAAAAGCAGCGCTGGC 100
BSNT_04366___ 101 TTTCACT---AGTAGAAGCAGCGGAACGACAGCATGAAGAAAGGCAAGC- 146
..|||.| || |||.| ||.||| |..|||||| |.||||
BL00038___ytl 101 AGTCAATTAAAG-AGATG--GCTGAA-------AAAAAGAAA-GAAAGCT 139
BSNT_04366___ 147 -----CAGTGCTGAA-GAACCGGAACCGGTGCAGAAACG------AAAA- 183
|| .|.|.|| ||.||| ||||||..|||||| ||||
BL00038___ytl 140 TTCATCA-CGATAAAGGAGCCG---CCGGTGATGAAACGTTTGGAAAAAG 185
BSNT_04366___ 184 -------AAATTTTCATTGAAAAGAAGAAAAGAAGAGATAAAAGCCGATA 226
|.||||.||||.||.||||.|||||||| .|.||||||
BL00038___ytl 186 AAAGAATACATTTACATTAAAGAGAAAAAAAGAAG------CATCCGATA 229
BSNT_04366___ 227 T---------ACAAGAAGAGAGACACC----AATGGTTTGA-GGAC--GA 260
| |.|||||| || ||||||||.| |||| ||
BL00038___ytl 230 TTAATAAAGGAAAAGAAG-------CCGATGAATGGTTTAACGGACTGGA 272
BSNT_04366___ 261 AGAAGATATTCATGTAAG---GCTCCCGAAGA---------GCAGGGTG- 297
.|.|||.|...|||.||| |.||.| |||| |||||| |
BL00038___ytl 273 CGGAGAAACGGATGAAAGCTTGATCGC-AAGAATTCCTGCGGCAGGG-GA 320
BSNT_04366___ 298 -GCGCTTGCTTCTTTTTATAA--AAGACATTTATATGATTTTCAGCTCAA 344
|..||.|...|.||||.||| ||.|| .|.||.||.||||||||.||
BL00038___ytl 321 AGAACTCGTACCGTTTTTTAAGGAATAC--GTGTACGAGTTTCAGCTGAA 368
BSNT_04366___ 345 ATGGGCAAGCTCTACTCTTTCAGAAATATCTCA-ACTCTC---------- 383
||||||||||||.||..|.||.||.||||| || .||.||
BL00038___ytl 369 ATGGGCAAGCTCGACAATCTCTGACATATC-CAGGCTTTCCCGGGAAATA 417
BSNT_04366___ 384 -AAACCAGGTGAA-----GCAGGACCGCATTTTGCGTTATCTGACCCAGC 427
|||.| |.|.|| ||| ||||| ||.|.||||
BL00038___ytl 418 AAAAGC-GATAAAATCCTGCA------CATTT---------TGGCACAGC 451
BSNT_04366___ 428 AGCTGCCTGATTCTTATTTTATTATGTATAAGCCTGTGCTGAA----AAT 473
||||.||.|||||.|||||.||.||||||..|||.||||||.| |||
BL00038___ytl 452 AGCTCCCGGATTCATATTTCATCATGTATCGGCCGGTGCTGCAGGTGAAT 501
BSNT_04366___ 474 TCAGCAGGCGGCGGTTGAATTAAGCATTGTGATTATTTCTCCTCTGGAAA 523
|||||.|||||.||..|.|||.|..|||||.|..||||.||.||||
BL00038___ytl 502 ----CAGGCTGCGGTAGAGCTCAGCGTCTTGATTCTCACTCCCCTTGAAA 547
BSNT_04366___ 524 TTTATTGCGTTTCTTTTTTAGAGGCTGAGGAAGACAGTGTCTACATAGGG 573
|.||.||..|.||.|||.|.||.|.||||...|||||.|..|..||.||.
BL00038___ytl 548 TCTACTGTATGTCATTTCTTGAAGGTGAGAGGGACAGCGCATTTATCGGT 597
BSNT_04366___ 574 TCTAAAAATCGTTTTTGGGACAAGAAAACAGCCTCTCAG---------AC 614
||.|||.|||||||||||.|..|.|||||.| |.|| ||
BL00038___ytl 598 TCCAAAGATCGTTTTTGGAAAGAAAAAACGG----TAAGGGGCAAGGAAC 643
BSNT_04366___ 615 TGCATCAGTGTTAAATCCAGGGCT---TAGCCTGTTTCGTACGGAC---- 657
.| |||.|||||||||| |||| .||| ||.|..||||
BL00038___ytl 644 GG--TCATTGTTAAATCC--GGCTGTCGAGC-----TCCTCAGGACAGGC 684
BSNT_04366___ 658 ----------TCGGTTGTGTCAAA--GATCGTAAAGGAAAAACAGGCTGA 695
.||||| |||.||| ||||| || |..|||
BL00038___ytl 685 AAGGTTCTTTCCGGTT-TGTTAAAGGGATCG----GG-------GATTGA 722
BSNT_04366___ 696 GATTCCGGTTCGAAAATTGCTTC-TGAGCAGAACGTCGTACATCGATTAC 744
..|.||.||.||.|||.| |.|| |.|||.|.||.||||||||||||||.
BL00038___ytl 723 ACTGCCTGTGCGCAAAGT-CATCGTCAGCCGTACATCGTACATCGATTAT 771
BSNT_04366___ 745 CCGGAGCCGCCATACGGCTTAGAAATAGCGG-ATAAGCG----GAG---C 786
|||||.||.||.||||| ||| ||| ||..||| ||| |
BL00038___ytl 772 CCGGAACCTCCCTACGG------AAT--CGGCATTTGCGACAAGAGACAC 813
BSNT_04366___ 787 GCGGAAGAATGGATTGAGCGGCAGAAGAAAAACACTGCTCCGATCAAACA 836
..|.||||.|||.|.|||...|||.|.||||||...||.|||||.|||..
BL00038___ytl 814 TGGAAAGAGTGGCTGGAGAAACAGCAAAAAAACTTCGCCCCGATTAAAAG 863
BSNT_04366___ 837 TCATCAGGTAAAGGCTGCAAA-GGC------TCTATTGTCTTACTGCATG 879
.||.|| ||||.||| ||| |||.|||||..||.||.|.
BL00038___ytl 864 CCAGCA-------GCTGAAAACGGCGAAAATTCTTTTGTCGCACGGCGTC 906
BSNT_04366___ 880 TCTGACTCCTATCGCAGACAGGAGTGGCTG----GAGTAA 915
||.|||||....||.||||||||.|||||| ||
BL00038___ytl 907 TCCGACTCGGTGCGGAGACAGGAATGGCTGAGCTGA---- 942
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