Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04413 and BL00031

See Amino acid alignment / Visit BSNT_04413 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:35
# Commandline: needle
#    -asequence dna-align/BSNT_04413.1.5803.seq
#    -bsequence dna-align/BL00031___ytwF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04413-BL00031___ytwF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04413-BL00031___ytwF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04413
# 2: BL00031___ytwF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 348
# Identity:     211/348 (60.6%)
# Similarity:   211/348 (60.6%)
# Gaps:          69/348 (19.8%)
# Score: 617.5
# 
#
#=======================================

BSNT_04413         1 TTGGAAATAAAAGAAATCAGCACAGCCGCTT-------TGAAAGAAAAAA     43
                     .||...||||||||.||       ..|||.|       |||||||.|...
BL00031___ytw      1 ATGACGATAAAAGAGAT-------TTCGCCTGATGAACTGAAAGACAGGC     43

BSNT_04413        44 TTG----AGGCG-GACGAAGAATTATATTTAATTGATGTCAGAGAAGATG     88
                     |||    |||.| .|||..||   |.|||  ||.||.|||||||||||||
BL00031___ytw     44 TTGCAAAAGGAGAAACGCTGA---ACATT--ATCGACGTCAGAGAAGATG     88

BSNT_04413        89 AAGAGGTAGCGGAAGGCATGATCCCGCAAGCCGTTCATATTCGCATGGGG    138
                     |||||||.||.|||||.||||||||..|||||||.||.|||...||||||
BL00031___ytw     89 AAGAGGTGGCTGAAGGAATGATCCCTGAAGCCGTCCACATTAAAATGGGG    138

BSNT_04413       139 GATATTCCTGAAAAAATGGAAACCCTTGATAAAGA-CAAAGAG---TACG    184
                     |||||.|||||||||.|.||...|.||.|.||||| |    ||   ||..
BL00031___ytw    139 GATATCCCTGAAAAACTCGACGTCTTTCAAAAAGATC----AGCCTTATA    184

BSNT_04413       185 TATTTATCTGCCGCTCAGGAATGCGCAGCATGAACGTCTGCAAGTACCTG    234
                     |.|||.|.|||||.|||||.|..||.|||...||.||||||...||..||
BL00031___ytw    185 TTTTTGTGTGCCGATCAGGCAAACGAAGCGAAAATGTCTGCCTCTATTTG    234

BSNT_04413       235 GATGAGCAAGGCTTTAA-------AACA--GTCAATGTTGAAGGCGGCAT    275
                     .|.||..||||||||.|       ||||  |||         ||||||||
BL00031___ytw    235 CAGGATAAAGGCTTTGATGTCACCAACATGGTC---------GGCGGCAT    275

BSNT_04413       276 GATGGCATGG-----------GAAGGCGAAACAAAACCAAAAAACTAG    312
                     |.|.|.||||           ||||.||    |||||.|||.||    
BL00031___ytw    276 GCTCGAATGGACCGGAAACACGAAGCCG----AAAACAAAATAA----    315


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