Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04396 and BL00020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:34
# Commandline: needle
# -asequence dna-align/BSNT_04396.1.5803.seq
# -bsequence dna-align/BL00020___ytbQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04396-BL00020___ytbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04396-BL00020___ytbQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04396
# 2: BL00020___ytbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 845
# Identity: 508/845 (60.1%)
# Similarity: 508/845 (60.1%)
# Gaps: 163/845 (19.3%)
# Score: 1338.0
#
#
#=======================================
BSNT_04396 1 GTGAAAAAAGTGCTGATCGCCGGCGGAAATG--------------GTGT- 35
||||||||.|||..|||||.|||.||.||.| ||.|
BL00020___ytb 1 GTGAAAAAGGTGACGATCGTCGGAGGGAACGGCACGGTCGGCCGCGTATT 50
BSNT_04396 36 --------GATTGGGAGACTGCTTGCTGAAGGGCTTATTTCAGACTATGA 77
||||||.||.| |||||| |||||
BL00020___ytb 51 AGCGGGCGGATTGGCAGGC--------GAAGGG------------TATGA 80
BSNT_04396 78 AGTGACAGTGCTTGAT---AAAGATCATTTC-GATGGCAA--AGCCTCTT 121
.|||||||||||.||| |||||.| | ||||.||| ||.|| .|
BL00020___ytb 81 GGTGACAGTGCTGGATTTAAAAGAAC----CGGATGACAAACAGGCT-GT 125
BSNT_04396 122 CC-----ATTCAGGCTGACGCGGCAAATTATGAGGAGCTGTTGAAGAAG- 165
|| ||.|.||..||.|||.||.||||..|.||..|..|.|| |||
BL00020___ytb 126 CCGTTTTATCCGGGTGGATGCGACAGATTACAACGAAGTCGTCAA-AAGC 174
BSNT_04396 166 ATTCCAAAAGATACCGATGCCATCTTGAATTTACTCGCTGTTAAAATCAA 215
|||||...|.|.||..||||..|..|.|||.|..|.||||| ||
BL00020___ytb 175 ATTCCTGCACAGACGAATGCGCTGATCAATCTTTTGGCTGT-------AA 217
BSNT_04396 216 A-------TACGATATTATGGACATCG--CTGAGTTTGAAAAAATGACGG 256
| ..||||.|..|.||| || ..|||||||..||||||||||
BL00020___ytb 218 AGCCGTCGGGCGATTTGCTTGAC--CGGCAGGAGTTTGCGAAAATGACGG 265
BSNT_04396 257 ATGTTTTCTATAGGGCAAGC------TATTATCTGTGCCGTGCGGCAGCG 300
||.|.||.|.|| |||| ||..|| |.|| ||.|||||.|||
BL00020___ytb 266 ATATCTTTTTTA----AAGCGACATATACGAT-TTTG-CGGGCGGCGGCG 309
BSNT_04396 301 GAGATCGGCAT-TCAAAAGCTCGTGTTCGCCAGCAGCAATCATGTCACAG 349
|||.|||||.| .|.|||| |.||.||.|||||||||||.|||||.||||
BL00020___ytb 310 GAGCTCGGCGTGCCGAAAG-TGGTATTTGCCAGCAGCAACCATGTGACAG 358
BSNT_04396 350 ATTTATACGAAAAAGACGGGCG-CTCGCTCTTAGGACGGGAAATCACAAC 398
||.||||.|||||.|.| |||| .||.||.||.||..||.|.||||..||
BL00020___ytb 359 ATGTATATGAAAAGGGC-GGCGATTCTCTGTTGGGGAGGCAGATCAACAC 407
BSNT_04396 399 AAGCGATTATCCGCTGTCAAAAAACTTGTACGGTGTATTAAAGCTGAGC- 447
||..||.||.||||.|||.||||.|||||||||..|..||||..|| ||
BL00020___ytb 408 AAATGACTACCCGCAGTCCAAAAGCTTGTACGGCTTGCTAAAATTG-GCG 456
BSNT_04396 448 TCTGAACAGATCGGCCATTTGTTTT------ATTTGGAAAATAAGCTATC 491
||.|||.|..|||||.|..|.||.| |.||.||....|||.|.||
BL00020___ytb 457 TCCGAAAATCTCGGCTACCTTTTCTCGCACCAATTAGACGCCAAGGTTTC 506
BSNT_04396 492 AGTAATCAACCTTCGAATCGGAACAG-TCGTGACAGATGAAATGGATACG 540
.||.|||||.||.||.|||||.|||| |..||| |.||||..|.||.|||
BL00020___ytb 507 CGTCATCAATCTGCGGATCGGGACAGCTGCTGA-AAATGAGCTAGAAACG 555
BSNT_04396 541 CTGCATGAAAAA--GAACGGACG-AAAAAGACACTGCTTTCTCACCCCGA 587
|||||.|.|||| || ||.| |||||.||.||..|.||.||||||||
BL00020___ytb 556 CTGCACGCAAAACCGA---GAAGCAAAAAAACGCTTTTATCCCACCCCGA 602
BSNT_04396 588 TCTGCTGTCG--ATTTTCAAAGCCGCCATTGAGACCAACATCCGG----- 630
.|| ..||| ||.||.||||||||.|| ||| ||||||
BL00020___ytb 603 CCT--CATCGGAATCTTTAAAGCCGCTAT------CAA-ATCCGGCAAAA 643
BSNT_04396 631 --TACGGCACTTATTACGCCGTCTCTGATAATCCGGGCCGGCCATGGTCC 678
||.||.||.|||||.||.|||...||.|||..|||.|||||.|||||.
BL00020___ytb 644 CATATGGTACATATTATGCTGTCAGCGACAATAAGGGGCGGCCGTGGTCG 693
BSNT_04396 679 ATTGAATCTGCCGTGAAT----GAACTTGGGTTTTCGCCACAAATCAATA 724
||.||.||.||| || |||||.||||....|||.|||.|||
BL00020___ytb 694 ATCGATTCCGCC----ATTCGGGAACTGGGGTACAGGCCGCAAGTCA--- 736
BSNT_04396 725 CG-GCCGAACTTCTGAAC------GAGGAGGAGAACGGAGCATAA 762
| ||| |||| || ||.||.| ||.||
BL00020___ytb 737 -GCGCC-----TCTG-ACATCCTTGATGAAG---ACTGA------ 765
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