Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06210 and BL00017

See Amino acid alignment / Visit BSNT_06210 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:10
# Commandline: needle
#    -asequence dna-align/BSNT_06210___yycE.1.5803.seq
#    -bsequence dna-align/BL00017___yycE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06210___yycE-BL00017___yycE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06210___yycE-BL00017___yycE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06210___yycE
# 2: BL00017___yycE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 448
# Identity:     283/448 (63.2%)
# Similarity:   283/448 (63.2%)
# Gaps:          71/448 (15.8%)
# Score: 791.0
# 
#
#=======================================

BSNT_06210___      1 ----ATGGGAAAAGGTTTTTCGTCTTTTCACGCAGCACAAATCCGAATTG     46
                         ||         ||||.||..||||| |||.|.|||..||.||||.|
BL00017___yyc      1 ATGCAT---------TTTTCCGATTTTTC-CGCCGTACAGGTCAGAATCG     40

BSNT_06210___     47 CGCGTCCTACGGGCCAGCTTGATGAGATTATTCGT----TTTTACGAAGA     92
                     |.||.|||||.|.||...||||.||    |.||||    |||||||||.|
BL00017___yyc     41 CCCGGCCTACAGACCGTTTTGACGA----AATCGTTGCATTTTACGAAAA     86

BSNT_06210___     93 GGGACTGTGTTTGAAACGAA--TAGGAGAATTTTCAAAGCATAACGGGTA    140
                     |||.|||.|..|||||  ||  |.||.|..|||||....||..|||||||
BL00017___yyc     87 GGGGCTGGGGCTGAAA--AAGCTTGGCGGTTTTTCCGGCCACCACGGGTA    134

BSNT_06210___    141 TGACGGTGTCATGTTCGGCCTTCCTCATGCCGATTATCATTTGGAATTCA    190
                     |.|.||.||||||||||||||.||..|||.|.|.||.||..|.|||||||
BL00017___yyc    135 TAATGGCGTCATGTTCGGCCTGCCGAATGTCCAATACCACCTTGAATTCA    184

BSNT_06210___    191 CC---CAGTAT-GAAGGGGGAAGCACT-----GCCCCCGTTCCACATCCC    231
                     ||   || ||| |||   ||||||.||     |.|.|||    || |...
BL00017___yyc    185 CCTCACA-TATCGAA---GGAAGCCCTTGTCCGGCACCG----AC-TAAA    225

BSNT_06210___    232 GACAGCCTTCTTGTTTTTTATGTGCCGAATGCAGATGAACTGGCAGCGAT    281
                     ||||..||.||.|||||||||.|.||..||.|.||.|||.|  ||| ||.
BL00017___yyc    226 GACAATCTGCTCGTTTTTTATATTCCTGATCCGGAGGAAAT--CAG-GAG    272

BSNT_06210___    282 CACTTCAAA---GCTAAAGC--ACATGGGCTATCAAGAGGT--CGAATCA    324
                     ||..|.|||   |||  .||  |||||||||||.|.||.||  ||  .|.
BL00017___yyc    273 CATATTAAATAGGCT--CGCTGACATGGGCTATGACGAAGTGCCG--CCT    318

BSNT_06210___    325 GAGAACCCGTACTGGA--GCAATGGGGGCGTGACGATAGAGGACCCGGAT    372
                     ||.||.|||||.||||  |.||..|||||  .|||.|.||.||.|||||.
BL00017___yyc    319 GAAAATCCGTATTGGAAGGAAAAAGGGGC--AACGGTGGAAGATCCGGAC    366

BSNT_06210___    373 GGCTGGCGGGTCGTTTTTATGAATTCAAAAGGGATATCAGACAAATGA    420
                     |||||||||.||||..|.||||||.|..||||.|||| ||        
BL00017___yyc    367 GGCTGGCGGATCGTGCTGATGAATACCGAAGGCATAT-AG--------    405


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