Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04431 and BL00012
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_04431___ytrF.1.5803.seq
# -bsequence dna-align/BL00012___ytrF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04431___ytrF-BL00012___ytrF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04431___ytrF-BL00012___ytrF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04431___ytrF
# 2: BL00012___ytrF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1444
# Identity: 918/1444 (63.6%)
# Similarity: 918/1444 (63.6%)
# Gaps: 245/1444 (17.0%)
# Score: 2745.0
#
#
#=======================================
BSNT_04431___ 1 TTGAGGTTTAAGGATCAG-----GTTCATTTTATCAGAAGAAATATGAAG 45
||||.|||||||||.||| ||||||| |||||||||||||.|
BL00012___ytr 1 TTGAAGTTTAAGGACCAGTTGAAGTTCATT-----AGAAGAAATATGAGG 45
BSNT_04431___ 46 AAAAACAGACTTCGCGTCTTTATGACGATTCTTGCGACAACAATGGCGTA 95
||||||.|.||.||.||.||.|||||.|||||.||.|||||..||||.|.
BL00012___ytr 46 AAAAACCGCCTGCGTGTATTCATGACCATTCTCGCAACAACGGTGGCCTG 95
BSNT_04431___ 96 TGCGTTTTTGGTTGTGCTGTCGTCCGTTGGATTTGGGATTCAAAAGACAA 145
.||||||||..|.|||||..|.||.||.|||||.||..|.|||||..|||
BL00012___ytr 96 CGCGTTTTTAATCGTGCTCGCATCGGTCGGATTCGGACTGCAAAAATCAA 145
BSNT_04431___ 146 TTACAGATATGACA----ATGAGCCAGCAGATTGT-AACGAAAGTCAGTG 190
|.||.|| ||| ||||...|||||||.|| |.|||.| |.|.||
BL00012___ytr 146 TGACTGA----ACAGCTGATGAAAGAGCAGATCGTGACCGAGA-TAAATG 190
BSNT_04431___ 191 TAATGGGCAAGGAAGGAGACAAGCCTATTAAA-----------AAAG--C 227
|..|.||.||.|||| |.|||..|.||.||| |||| |
BL00012___ytr 191 TTGTCGGAAAAGAAG--GGCAAAGCGATCAAAAGGTTCAAAAGAAAGACC 238
BSNT_04431___ 228 TGATTTAGAGAAGTATGATCACGTAAGGTCAGTTGTAGAAAGAACGCAA- 276
||| |||.|| ||| ||.|.|||||
BL00012___ytr 239 TGA-------AAGAAT----------------TTG----AAAACCGCAAA 261
BSNT_04431___ 277 -ATGTAT-----------GAAC---CAAAC---------------AAAGC 296
||||.| ||.| ||||| .||||
BL00012___ytr 262 GATGTGTCCGCGATTATCGAGCGCACAAACGTGTTCGCACCTGCTGAAGC 311
BSNT_04431___ 297 TACTTTAGGCAATCGTACAAATGAAAGCTCAAATCTC-ATTTTTACTAAT 345
.|..||.|||||..|.||.|||.| ||||||.|| |.|.|||| |||
BL00012___ytr 312 AAAATTGGGCAACAGGACCAATAA----TCAAATGTCGAATATTAC-AAT 356
BSNT_04431___ 346 -------ATGAATGATGAATTAAAGGCCAATATGGAATTGGAAAAGGGAA 388
|||...|.|||...|||.||||||||..||.|.||....||..
BL00012___ytr 357 TACCGACATGGCCGCTGAGCAAAAAGCCAATATCAAACTCGATCGCGGCC 406
BSNT_04431___ 389 GAGTCGCAAAGTCGGAA-----AATGAAATCGTAGTAGGATACGACTTCG 433
|.||.||.|| || ||||||||.||.||.||.|||.|.||||
BL00012___ytr 407 GCGTAGCGAA-----AACACCGAATGAAATTGTCGTCGGCTACCATTTCG 451
BSNT_04431___ 434 CAAAGAGATTATTGACGAAAAAAGAATCGGAAGAATATAACAAAAAAATC 483
..||||...|.|.|||||||||.|||.|.|.|||.|||.|.||
BL00012___ytr 452 GGAAGAACCTCTGGACGAAAAAGGAAGCCGCAGATTATGAAAA------- 494
BSNT_04431___ 484 GAAGAAGCAAAAGGCAATCCAGAGGATATAAAAGAACCAAAAGGCTATAC 533
|.|||.|.|||| .|||.|.|||||...||||||.||.||||| ||||
BL00012___ytr 495 GCAGATGGAAAA--TAATGCTGAGGAAGCAAAAGAGCCGAAAGG--ATAC 540
BSNT_04431___ 534 GA--AAGACATTCTGAACAAGACGATTGAACTGAGTGTATCGAAGACAGA 581
|| ||||.|||||...|||.|||||||||.|.|...|.||.||.|..||
BL00012___ytr 541 GAAGAAGATATTCTCGGCAAAACGATTGAATTAAAGATCTCAAAAATGGA 590
BSNT_04431___ 582 TCCTAAAACAGGGGATGTTACAA----AAACAAAAACATATGACTTTAAA 627
|...||||||||.|| |.|| ||.|.|||||||||||..|.|||
BL00012___ytr 591 TGAAAAAACAGGAGA----AGAAGGGGAAGCGAAAACATATGATCTGAAA 636
BSNT_04431___ 628 ATTGTCGGTATTACAAAAAAACCATCTCAAGACTGGATG-GAG-GACTCA 675
.|||||||..|.|||||||||||.||..|.||.||| | ||| ||.||
BL00012___ytr 637 GTTGTCGGAGTGACAAAAAAACCTTCGTATGAATGG--GCGAGCGATTC- 683
BSNT_04431___ 676 AACA-TTTTTATCAGTGATCA-----ATTCAAAAA-AGAT-------TTT 711
|||| |.|.|.|||| || ||.|||||| |.|| |||
BL00012___ytr 684 AACAGTCTATGTCAG----CAACGGCATGCAAAAAGACATCACCGGCTTT 729
BSNT_04431___ 712 ------TCGGAATTCTTAGATTTCAAAG---GCG--------GAAATGTT 744
|||||| |||| ||| ||||
BL00012___ytr 730 CTGAAGTCGGAA------------AAAGACAGCGGCATGATCGAAA---- 763
BSNT_04431___ 745 GAAACGAACATTGGTGTTTTTGCTGATAAGTTTGAGAATGTGGAACAGCT 794
||||| |.||.| ||||..||.|||||.|||||..||||.|.||||||
BL00012___ytr 764 -AAACG--CTTTCG-GTTTACGCGGATAACTTTGAACATGTCGGACAGCT 809
BSNT_04431___ 795 GACAAATGATCTAACAGATGACGGGTACTATGTCACATCAGTGACTACTG 844
|||||..|||.|....|||||.||.|||||.|||...|||.|.|| |
BL00012___ytr 810 GACAACAGATTTGGAGGATGAAGGCTACTACGTCGATTCAATAAC----G 855
BSNT_04431___ 845 AA----CTTGAGGGAGC--CAATACCTTCTTCATGGTCTTCAAAATCGGA 888
|| ||.|| .||| ||||...||.|||||||..||.||||||||.
BL00012___ytr 856 AAAAAGCTCGA--TAGCATCAATCTTTTTTTCATGGCTTTTAAAATCGGT 903
BSNT_04431___ 889 CTGATCTTTGTCGGATGT-ATCGCAGTTATCATTTCAGCGATCGGCATTT 937
||||||||||||||| || ||.||.||..|.||||||||||||||.||||
BL00012___ytr 904 CTGATCTTTGTCGGA-GTCATTGCCGTCTTTATTTCAGCGATCGGGATTT 952
BSNT_04431___ 938 TTAACACGATGACGATGGCGGTGACAGAGAGAACGCAAGAGATCGGCATT 987
|.|||||||||||.||||||||.||||||.|.|||||.||.|||||||||
BL00012___ytr 953 TCAACACGATGACAATGGCGGTTACAGAGCGGACGCAGGAAATCGGCATT 1002
BSNT_04431___ 988 ATGAAAGCGATTGGGGCGAGCCCGTCAA--TCATTCGCCGAATGTTCTTG 1035
|||||||||||.||.||.|||||| || |.||.||...|||||||.||
BL00012___ytr 1003 ATGAAAGCGATCGGTGCAAGCCCG--AATGTGATCCGAAAAATGTTCCTG 1050
BSNT_04431___ 1036 ATGGAAAGCGCGTATATCGGAATTTTAGGCTGTGTGATTGGGATTATCAT 1085
.||||||||||.||||||||.||.|||||.|.|||..|.||.||||||||
BL00012___ytr 1051 CTGGAAAGCGCCTATATCGGCATCTTAGGATCTGTTTTAGGTATTATCAT 1100
BSNT_04431___ 1086 TTCTTACGGCGTGAGCTACCTTGTCA----------ACCTGGCCGTTCCG 1125
|||.|||||.||.||||...|.||.| |||||.|..|| .
BL00012___ytr 1101 TTCATACGGTGTCAGCTTTTTAGTGAACAAGATTATACCTGTCATTT--T 1148
BSNT_04431___ 1126 ATGATTCTTGCGGCT--ACAAGCGGAAGCGA-TGCGGGCGACTTGAATTA 1172
||.|| |||.| |.|||..||||||| |||||..||..|.|.|..
BL00012___ytr 1149 ATCAT-----CGGTTTCAGAAGGAGAAGCGAGTGCGGCAGAGCTCAGTAT 1193
BSNT_04431___ 1173 CACATTCTCCTACATCCCGGCGAGTCTTGTGATCATTGC--CGTTGTGAT 1220
|||.|||||..|.||.||||..||||||||..||||.|| |.| ||||
BL00012___ytr 1194 CACCTTCTCGCATATTCCGGTCAGTCTTGTCCTCATCGCGACAT--TGAT 1241
BSNT_04431___ 1221 --TTGCGGAGGGGTCG-CAGTCATTTCCGGAATGAACCCGGCTAGAAAAG 1267
.|||| ||.|||| ||.|| |||||||..||||.|||||.|..||||
BL00012___ytr 1242 CAGTGCG--GGTGTCGCCATTC-TTTCCGGCCTGAATCCGGCCATTAAAG 1288
BSNT_04431___ 1268 CAACAAAAACCAACGTGCTGACAGCGTTGAGAAGAGAACTATAA 1311
|.||||.|||.||||||||||||||.||.||||||||.||.||.
BL00012___ytr 1289 CGACAAGAACGAACGTGCTGACAGCATTAAGAAGAGAGCTTTAG 1332
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