Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04434 and BL00010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_04434___ytrC.1.5803.seq
# -bsequence dna-align/BL00010___ytrC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04434___ytrC-BL00010___ytrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04434___ytrC-BL00010___ytrC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04434___ytrC
# 2: BL00010___ytrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1117
# Identity: 625/1117 (56.0%)
# Similarity: 625/1117 (56.0%)
# Gaps: 269/1117 (24.1%)
# Score: 1433.5
#
#
#=======================================
BSNT_04434___ 1 ATGGTAGACCGAGGTCTCCTCTATCGAGAGTGGAAGCAGAA--TCAAGTG 48
|||||||||||.||.||..|.|||..|||.|||||.|||.| || ||
BL00010___ytr 1 ATGGTAGACCGCGGACTTTTATATAAAGAATGGAAACAGCATTTC---TG 47
BSNT_04434___ 49 GTGATTTTGTTAAGTATCGTGTTTTT-----AGTGTTG----GCAAATC- 88
|||||| ||.||| ||||||| .|||||| |..||.|
BL00010___ytr 48 --GATTTT-TTTAGT----TGTTTTTGCAGCGGTGTTGCTGAGTGAACCG 90
BSNT_04434___ 89 CTTTAACGATTTATCACTCAT-ATTCTTT---AAACGAGGCATGCCTAGC 134
||| .|||||| |.| || |||.||| ..||.|||.||||||
BL00010___ytr 91 CTT--GCGATTT-TGA---ATGATTATTTCCAGTACCAGGGATGCCT--- 131
BSNT_04434___ 135 ACATTCAGATCCGAAATTTTGTACATTTTTTGTAGATTACC--ACATAGA 182
|.||||.|.|||| |.|||.|| |.|||||
BL00010___ytr 132 ---TGCAGAACAGAAA-----------------AAATTTCCCGATATAGA 161
BSNT_04434___ 183 CAGC--TTGATTCAA--ATTAATTGGGTGATAGGG---ATTATA------ 219
..|| ||.||..|| ||| ||.||||.|..||| ||.|.|
BL00010___ytr 162 GTGCGTTTTATATAAAGATT-ATGGGGTAAGCGGGGCCATGAGAATGTTC 210
BSNT_04434___ 220 ----TTGGCAGTAT---GTTT-----------GATCGGGCTTGAACGTTC 251
|||||.|..| |.|| |||||||.|||||||...
BL00010___ytr 211 TGGGTTGGCGGAGTCGCGCTTGCGATCAGCCAGATCGGGTTTGAACGGAG 260
BSNT_04434___ 252 GAGAGGTACGATGGACTTTTTGTTAGGTCTTCCATATAAAAGAAACCAA- 300
.|||||.|||.|.||||||....|.||.||.||.|| |||
BL00010___ytr 261 CAGAGGAACGCTTGACTTTACACTCGGCCTCCCTTA----------CAAG 300
BSNT_04434___ 301 ---------ATTTTCCAAACGAAATTTTGGTTAGGCGCGGTTGTTATTGT 341
||||||.|.||.||||.||..||.||| .||...|||.|
BL00010___ytr 301 CGCGGCGTCATTTTCAATACTAAATATTTCTTCGGC---ATTTCAATTCT 347
BSNT_04434___ 342 GTTTTC------GCAATTGGTCGGATTTTTTTTGGCATGGCT---GC--T 380
.||..| ||.||| ||.||..|||..|| || || |
BL00010___ytr 348 TTTAACAGCCCAGCTATT------ATCTTACTTGTTAT--CTTACGCTTT 389
BSNT_04434___ 381 GATTCTTTTCTTAAAACCTGAACAAGTAAACTTTTTTGAACATGGAAGCA 430
||||.|||| .||.|||.|..|| ||...|||||| .|||| ||.|
BL00010___ytr 390 GATTATTTT-GTATAACGTTGAC--GTTGTCTTTTT---CCATG--AGTA 431
BSNT_04434___ 431 TT--------GGTGTTATGATCACTAGCATTATGTTTTACTCATTAGTAA 472
|| |..|||||..|| .||.|||||.|.|||||..|.||.|
BL00010___ytr 432 TTTTATCGGGGCGGTTATCTTC---TGCTTTATGGTCTACTCGCTTGTCA 478
BSNT_04434___ 473 TGGCCGCAGGGACGTTAGCTGGAAA--CGCTTTTGCTCAG----TTGTTG 516
||||.||.||..||.|..|.||.|| ||| |.||.||| |.|||
BL00010___ytr 479 TGGCGGCGGGCGCGATGACCGGCAATCCGC--TGGCCCAGATGATCGTT- 525
BSNT_04434___ 517 ACAGCTTTTGCAACTTCGGTATTGCCGTATTTGATTATCGTTTTGCCAT- 565
||||||.||.|.|||.|..|||||||||||.|.|||| |||.|
BL00010___ytr 526 ---GCTTTTTCAGCGTCGATTCTGCCGTATTTGCTGATCG----GCCTTC 568
BSNT_04434___ 566 ---TTTCTAATATA-GAGATTATCTCAGGGGTTCAAATTTG-----GAAA 606
|..|.||..|| || ||.||| |.|||.||| |||| ||..
BL00010___ytr 569 CGCTGGCCAACTTACGA-ATCATC-CTGGGTTTC---TTTGGGCATGACC 613
BSNT_04434___ 607 CT-CTTCCCT---------AACATTGAA-TATTACTTCGATTTTGAAA-- 643
|| |||.|.| |||| ||| ||.|| ||||.|..||
BL00010___ytr 614 CTGCTTTCTTTTATGGTGAAACA--GAACTACTA----GATTATATAACG 657
BSNT_04434___ 644 ---ATAATTTGATGGACTTTTCTC--CAATTGCTTATGTGG-ATTCAAGT 687
||.||.| || ||| ||.||.| || |||||||.
BL00010___ytr 658 CCGATCATAT-----AC----CTCAACAGTTTC------GGCATTCAAGA 692
BSNT_04434___ 688 TGG----GTGGCGGAAAGTAAATATTTATTACTTATCCCTGC-AGTGATG 732
.|| .|||| .|||| ..|||||.|| || .|..|||
BL00010___ytr 693 CGGCAGCCTGGC-----------CTTTA-CGCTTATTCC-GCTCGCCATG 729
BSNT_04434___ 733 AGTATTCTCTTTTATTTCATTGGATATATCAGTTTTATAAAACATCATAA 782
.|.||..|.||||||.|.||.||.|||.||.|.|||||.|||||.||...
BL00010___ytr 730 GGGATCTTGTTTTATATAATCGGCTATTTCTGCTTTATCAAACAGCAGCT 779
BSNT_04434___ 783 TGAGCGTAATGGATACTTTTTCTTATGGAAAACATTAGATCGGCCTATCC 832
|||.||.||.|||.|.||||||.|.||||.||.|.|.|||||.||.||||
BL00010___ytr 780 TGAACGGAACGGACATTTTTTCCTTTGGAGAAAAATGGATCGTCCGATCC 829
BSNT_04434___ 833 AAATCCTTGTCATCGTGTTAGGAATCCTGGGTTTTGGTATAG----TGGG 878
|.||.||.||.||..|.||.||.|||..|||.||.||.|.|| ||
BL00010___ytr 830 AGATTCTCGTGATTTTATTCGGCATCTGGGGATTCGGCACAGCCGCTG-- 877
BSNT_04434___ 879 GCATTCTGCGGGTGAATCCATAGCGGGTTACATTATCGGAATGATTATCG 928
||.||.||...|.|| |.||.||..||||.|||.|.||||
BL00010___ytr 878 -----CTTCGAGTCTGTTCA------GCTATATATTCGGTATGTTGATCG 916
BSNT_04434___ 929 GAGGAATT-----GTAGGATTTTTGATCAGTTATTTTTCCATCTTTAAAA 973
| || ||.||||||||.||||||||.||.|..||.||.||||
BL00010___ytr 917 G-----TTCGGCAGTCGGATTTTTAATCAGTTACTTCTTGATTTTCAAAA 961
BSNT_04434___ 974 AAGTAAGACA---TTAA 987
||.|||.||| .|||
BL00010___ytr 962 AAATAAAACAGCTGTAA 978
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