Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04444 and BL00003

See Amino acid alignment / Visit BSNT_04444 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:38
# Commandline: needle
#    -asequence dna-align/BSNT_04444___ytpA.1.5803.seq
#    -bsequence dna-align/BL00003___ytpA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04444___ytpA-BL00003___ytpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04444___ytpA-BL00003___ytpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04444___ytpA
# 2: BL00003___ytpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 803
# Identity:     577/803 (71.9%)
# Similarity:   577/803 (71.9%)
# Gaps:          46/803 ( 5.7%)
# Score: 1955.0
# 
#
#=======================================

BSNT_04444___      1 ATGTGG-ACCTGGAAAGCAGACAGACCTGTTGCAGTGATTGTAATCATTC     49
                     |||||| .|.||| ||||.||.|||||||||||....||.||..||||||
BL00003___ytp      1 ATGTGGTGCATGG-AAGCGGAAAGACCTGTTGCTACAATCGTCGTCATTC     49

BSNT_04444___     50 ACGGGGCAAGTGAATATCACGGACGATATAAATGGCTGATTGAAATGTGG     99
                     ||||.|||.||||..|||||||.||.||||||||||||...|||||||||
BL00003___ytp     50 ACGGTGCATGTGAGCATCACGGGCGGTATAAATGGCTGTCCGAAATGTGG     99

BSNT_04444___    100 CGGTCTTCGGGTTATCACGTTGTCATGGGCGATTTGCCTGGACAGGGAAC    149
                     ||.||.||.||.|.|.|.||.||.|||||.||||||||.||.|||||.||
BL00003___ytp    100 CGTTCATCCGGCTTTAATGTCGTGATGGGGGATTTGCCCGGCCAGGGCAC    149

BSNT_04444___    150 AACGACAAGAGCGAGAGGGCATATTCGCTCGTTTCAAGAATACATTGATG    199
                     ..|||||||||..|||||.|||||.|||||.|||||||||||.|||||||
BL00003___ytp    150 TTCGACAAGAGAAAGAGGACATATACGCTCTTTTCAAGAATATATTGATG    199

BSNT_04444___    200 AAGTAGATGCTTGGATAGATAAAGCGCGAA--CCTTTGATCTGCCGGTTT    247
                     ||||.||....|||.|.|  ..||.|||||  |.|||||.|||||.||.|
BL00003___ytp    200 AAGTGGACAAATGGGTCG--CCAGGGCGAAAGCATTTGAACTGCCTGTGT    247

BSNT_04444___    248 TTCTTCTAGGTCACAGCATGGGCGGTCTGGTCGCGATTGAATGGGTTA--    295
                     ||.|.||.||.||||||||||||||.|||.|.|||||.||||||.|||  
BL00003___ytp    248 TTATGCTCGGGCACAGCATGGGCGGCCTGATTGCGATCGAATGGTTTAAG    297

BSNT_04444___    296 -AACAGCAAAGAAATCCCCGG-ATTACGGGAATTATTTTATCATCACCGT    343
                      |.||||||||       ||| |||.|.||..|.|||||||||||.||.|
BL00003___ytp    298 CAGCAGCAAAG-------CGGCATTGCCGGTCTCATTTTATCATCCCCTT    340

BSNT_04444___    344 GTCTCGGACTGCAAATTAAAGTC-AATAAA-----GCGCTTGATCTTGCA    387
                     |||||||.|||| ||||||||.| ||.|||     |..||||||     .
BL00003___ytp    341 GTCTCGGGCTGC-AATTAAAGCCGAACAAATTTCTGGACTTGAT-----T    384

BSNT_04444___    388 TCAAAAGGTCTGAATGTCATCGCTCCGTCACTTAAGGTTG-ATTCGGGAT    436
                     ||.||.||.||.||.||..|.||.|||||..|...|.||| ||.||||||
BL00003___ytp    385 TCCAAGGGGCTCAACGTTTTGGCGCCGTCTATGCGGTTTGAATCCGGGAT    434

BSNT_04444___    437 TATCAATTGATATGGCGACGCGCAATGAGGACGTCATCGAGGCTGACCAA    486
                     .| |...|||||..||||||.|.||..|.||.||||||||....|||...
BL00003___ytp    435 CA-CGCCTGATAAAGCGACGAGAAACAAAGAAGTCATCGAAATGGACATC    483

BSNT_04444___    487 AATGATTCGTTATACGTCAGGAAAGTTTCTGTCAGATGGTA-CAGAGAGC    535
                     ||.|||||.|||||..|||..|||||||||||||||||||| || |||..
BL00003___ytp    484 AACGATTCATTATATATCACAAAAGTTTCTGTCAGATGGTATCA-AGAAA    532

BSNT_04444___    536 TTTTAAAGACAATTGAATCG-GCAATGGTGCCGACAGAGGCATTTTTGAA    584
                     |.||||| |...|||||..| ||.||||.||||||.||.||.|||.|.||
BL00003___ytp    533 TGTTAAA-AGCGTTGAAAAGCGCGATGGAGCCGACGGACGCCTTTCTCAA    581

BSNT_04444___    585 AGTTCCGCTTCTTGTGATGCAAGCCGGTGATGACAAGCTTGTTGACAAAA    634
                     ..|.|||||..||||.|||||.||.||....|||..||||||.|||||||
BL00003___ytp    582 CATCCCGCTCTTTGTCATGCAGGCGGGCACCGACTGGCTTGTCGACAAAA    631

BSNT_04444___    635 CGATGGTCATCAAGTGGTTTAATGGTGTTGCTTCTCATAATAAAGCATAC    684
                     ..||||||.|||||||||||||.....|||||||.||.|||||..|.|||
BL00003___ytp    632 AAATGGTCGTCAAGTGGTTTAACCAGCTTGCTTCCCACAATAAGACGTAC    681

BSNT_04444___    685 AGAGAGTGGGAAGGGCTT-TACCATGAGATCTTCAATGAACCCGAGAGAG    733
                     ||.||.|||| |.||||| |||||.||.||.||||||||.||.||..|.|
BL00003___ytp    682 AGGGAATGGG-ATGGCTTGTACCACGAAATTTTCAATGAGCCTGAACGGG    730

BSNT_04444___    734 AAGATGTTTTTAAAGCAGCAAGAGCGTTTACTGATCAATATATTTGA---    780
                     ||||.|||||||||||.||.|||||||||.|.||.||.|||||   |   
BL00003___ytp    731 AAGACGTTTTTAAAGCGGCCAGAGCGTTTGCGGAGCAGTATAT---AACA    777

BSNT_04444___    780 ---    780
                        
BL00003___ytp    778 TAA    780


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