Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04444 and BL00003
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:38
# Commandline: needle
# -asequence dna-align/BSNT_04444___ytpA.1.5803.seq
# -bsequence dna-align/BL00003___ytpA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04444___ytpA-BL00003___ytpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04444___ytpA-BL00003___ytpA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04444___ytpA
# 2: BL00003___ytpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 803
# Identity: 577/803 (71.9%)
# Similarity: 577/803 (71.9%)
# Gaps: 46/803 ( 5.7%)
# Score: 1955.0
#
#
#=======================================
BSNT_04444___ 1 ATGTGG-ACCTGGAAAGCAGACAGACCTGTTGCAGTGATTGTAATCATTC 49
|||||| .|.||| ||||.||.|||||||||||....||.||..||||||
BL00003___ytp 1 ATGTGGTGCATGG-AAGCGGAAAGACCTGTTGCTACAATCGTCGTCATTC 49
BSNT_04444___ 50 ACGGGGCAAGTGAATATCACGGACGATATAAATGGCTGATTGAAATGTGG 99
||||.|||.||||..|||||||.||.||||||||||||...|||||||||
BL00003___ytp 50 ACGGTGCATGTGAGCATCACGGGCGGTATAAATGGCTGTCCGAAATGTGG 99
BSNT_04444___ 100 CGGTCTTCGGGTTATCACGTTGTCATGGGCGATTTGCCTGGACAGGGAAC 149
||.||.||.||.|.|.|.||.||.|||||.||||||||.||.|||||.||
BL00003___ytp 100 CGTTCATCCGGCTTTAATGTCGTGATGGGGGATTTGCCCGGCCAGGGCAC 149
BSNT_04444___ 150 AACGACAAGAGCGAGAGGGCATATTCGCTCGTTTCAAGAATACATTGATG 199
..|||||||||..|||||.|||||.|||||.|||||||||||.|||||||
BL00003___ytp 150 TTCGACAAGAGAAAGAGGACATATACGCTCTTTTCAAGAATATATTGATG 199
BSNT_04444___ 200 AAGTAGATGCTTGGATAGATAAAGCGCGAA--CCTTTGATCTGCCGGTTT 247
||||.||....|||.|.| ..||.||||| |.|||||.|||||.||.|
BL00003___ytp 200 AAGTGGACAAATGGGTCG--CCAGGGCGAAAGCATTTGAACTGCCTGTGT 247
BSNT_04444___ 248 TTCTTCTAGGTCACAGCATGGGCGGTCTGGTCGCGATTGAATGGGTTA-- 295
||.|.||.||.||||||||||||||.|||.|.|||||.||||||.|||
BL00003___ytp 248 TTATGCTCGGGCACAGCATGGGCGGCCTGATTGCGATCGAATGGTTTAAG 297
BSNT_04444___ 296 -AACAGCAAAGAAATCCCCGG-ATTACGGGAATTATTTTATCATCACCGT 343
|.|||||||| ||| |||.|.||..|.|||||||||||.||.|
BL00003___ytp 298 CAGCAGCAAAG-------CGGCATTGCCGGTCTCATTTTATCATCCCCTT 340
BSNT_04444___ 344 GTCTCGGACTGCAAATTAAAGTC-AATAAA-----GCGCTTGATCTTGCA 387
|||||||.|||| ||||||||.| ||.||| |..|||||| .
BL00003___ytp 341 GTCTCGGGCTGC-AATTAAAGCCGAACAAATTTCTGGACTTGAT-----T 384
BSNT_04444___ 388 TCAAAAGGTCTGAATGTCATCGCTCCGTCACTTAAGGTTG-ATTCGGGAT 436
||.||.||.||.||.||..|.||.|||||..|...|.||| ||.||||||
BL00003___ytp 385 TCCAAGGGGCTCAACGTTTTGGCGCCGTCTATGCGGTTTGAATCCGGGAT 434
BSNT_04444___ 437 TATCAATTGATATGGCGACGCGCAATGAGGACGTCATCGAGGCTGACCAA 486
.| |...|||||..||||||.|.||..|.||.||||||||....|||...
BL00003___ytp 435 CA-CGCCTGATAAAGCGACGAGAAACAAAGAAGTCATCGAAATGGACATC 483
BSNT_04444___ 487 AATGATTCGTTATACGTCAGGAAAGTTTCTGTCAGATGGTA-CAGAGAGC 535
||.|||||.|||||..|||..|||||||||||||||||||| || |||..
BL00003___ytp 484 AACGATTCATTATATATCACAAAAGTTTCTGTCAGATGGTATCA-AGAAA 532
BSNT_04444___ 536 TTTTAAAGACAATTGAATCG-GCAATGGTGCCGACAGAGGCATTTTTGAA 584
|.||||| |...|||||..| ||.||||.||||||.||.||.|||.|.||
BL00003___ytp 533 TGTTAAA-AGCGTTGAAAAGCGCGATGGAGCCGACGGACGCCTTTCTCAA 581
BSNT_04444___ 585 AGTTCCGCTTCTTGTGATGCAAGCCGGTGATGACAAGCTTGTTGACAAAA 634
..|.|||||..||||.|||||.||.||....|||..||||||.|||||||
BL00003___ytp 582 CATCCCGCTCTTTGTCATGCAGGCGGGCACCGACTGGCTTGTCGACAAAA 631
BSNT_04444___ 635 CGATGGTCATCAAGTGGTTTAATGGTGTTGCTTCTCATAATAAAGCATAC 684
..||||||.|||||||||||||.....|||||||.||.|||||..|.|||
BL00003___ytp 632 AAATGGTCGTCAAGTGGTTTAACCAGCTTGCTTCCCACAATAAGACGTAC 681
BSNT_04444___ 685 AGAGAGTGGGAAGGGCTT-TACCATGAGATCTTCAATGAACCCGAGAGAG 733
||.||.|||| |.||||| |||||.||.||.||||||||.||.||..|.|
BL00003___ytp 682 AGGGAATGGG-ATGGCTTGTACCACGAAATTTTCAATGAGCCTGAACGGG 730
BSNT_04444___ 734 AAGATGTTTTTAAAGCAGCAAGAGCGTTTACTGATCAATATATTTGA--- 780
||||.|||||||||||.||.|||||||||.|.||.||.||||| |
BL00003___ytp 731 AAGACGTTTTTAAAGCGGCCAGAGCGTTTGCGGAGCAGTATAT---AACA 777
BSNT_04444___ 780 --- 780
BL00003___ytp 778 TAA 780
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