Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00904 and RBAM_036880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:37
# Commandline: needle
# -asequence pep-align/BSNT_00904.1.9828.seq
# -bsequence pep-align/RBAM_036880___yxbF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00904-RBAM_036880___yxbF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00904-RBAM_036880___yxbF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00904
# 2: RBAM_036880___yxbF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 396
# Identity: 54/396 (13.6%)
# Similarity: 98/396 (24.7%)
# Gaps: 226/396 (57.1%)
# Score: 180.5
#
#
#=======================================
BSNT_00904 1 MSKVDRRITKSQEAIKIALIELMTEKSFDHITIKEISERANVNRGTIYLH 50
:...:|.. ||.||:.::.|:....:|:|:|:|||:|:|||:||:
RBAM_036880__ 1 ---MPDSVTTD---IKQALLTMLGERDIRRVTMKDIAERAHVSRGTLYLY 44
BSNT_00904 51 YLDKFDLLEKIMEEHINNMGD-FCESAAEMD-------WIESTVH-CMEY 91
|.||:.:||.|.||..:.:.: ..:|....| | ..|| .:.:
RBAM_036880__ 45 YEDKYAILEDIEEEMKDGLSEALYDSLKNKDVLHLHGGW--QKVHPTLSF 92
BSNT_00904 92 LESNYLFFSTMLASEGARYFR-SQFLKFNIEEFRKDVDVTK-GKNYGQSE 139
::.:.:||.||:......||. ..||| :.||.||.::. ..::..:|
RBAM_036880__ 93 VDRHRVFFQTMMDRNKMPYFHFHAFLK---DVFRHDVLLSPVNADFSPTE 139
BSNT_00904 140 -DVIVEFIANAYVGVVEWWLKNEMPYPPRVMAEKVGELLERIL------- 181
|:.:.:.|.....:|.:||..|....|..::.:|.:|:.:..
RBAM_036880__ 140 QDMYIHYRALYTYAIVLYWLNEEPGASPEAISGQVWDLISQKRFYWLFGR 189
BSNT_00904 181 -------------------------------------------------- 181
RBAM_036880__ 190 RMPEQEEKKPADRRVTRTRQALQEAMIGLMAEKKEYAAITISDIARQSNL 239
BSNT_00904 181 -------------------------------------------------- 181
RBAM_036880__ 240 RRATFYDHYANKEALLKTIIHQSCRDLIGLLTVKGEPADCSMEEAEAALV 289
BSNT_00904 181 -------------------------------------------------- 181
RBAM_036880__ 290 RLFSALSEGLPLVHFLRECSGVPDVIPEMFRALQSFYLHQPLHIQAGKKL 339
BSNT_00904 181 ---------------------------------------------- 181
RBAM_036880__ 340 YAYYVASMLAGLIQYRLHEGKDHAPDILAREFLQFLDIKKYRVILL 385
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