Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05824 and RBAM_035310

See DNA alignment / Visit BSNT_05824 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:20
# Commandline: needle
#    -asequence pep-align/BSNT_05824.1.9828.seq
#    -bsequence pep-align/RBAM_035310___ywcI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05824-RBAM_035310___ywcI.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05824-RBAM_035310___ywcI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05824
# 2: RBAM_035310___ywcI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 139
# Identity:      46/139 (33.1%)
# Similarity:    60/139 (43.2%)
# Gaps:          40/139 (28.8%)
# Score: 194.0
# 
#
#=======================================

BSNT_05824         1 MREKKSAVFSCGLRLRKRAAKKAACQKEAEGCFSMKRLLVSLRVWMVFLM     50
                                                       ||||||||||||||||
RBAM_035310__      1 ----------------------------------MKRLLVSLRVWMVFLM     16

BSNT_05824        51 NWVTP-DRKTAAAAVYSAQRTYQRKAAVQAAGLVSFYEWRMAVNEEEKQK     99
                     ||:.| :.:...||||..|..|.:||. :.||..||.....:.:..::.|
RBAM_035310__     17 NWMAPGNGRYPLAAVYGNQAAYHKKAK-RTAGAFSFVSHVRSADLTDETK     65

BSNT_05824       100 AKAAALYKRRCLQAFKESPKQERAGPYLYMAVKRR----    134
                     :....|.|.|.:...||.||:|||||.....:|:|    
RBAM_035310__     66 SARGRLDKNRWMPVRKELPKRERAGPATLHHMKKRVQSH    104


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