Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05761 and RBAM_034830

See DNA alignment / Visit BSNT_05761 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:15
# Commandline: needle
#    -asequence pep-align/BSNT_05761___ywfK.1.9828.seq
#    -bsequence pep-align/RBAM_034830___ywfK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05761___ywfK-RBAM_034830___ywfK.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05761___ywfK-RBAM_034830___ywfK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05761___ywfK
# 2: RBAM_034830___ywfK
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 299
# Identity:     254/299 (84.9%)
# Similarity:   273/299 (91.3%)
# Gaps:           0/299 ( 0.0%)
# Score: 1296.0
# 
#
#=======================================

BSNT_05761___      1 MYYDVLKTFIAVVEEKNFTKAAEKLMISQPSVSLHIKNLEKEFQTALLNR     50
                     |||..|||||||||||||||||:|||||||||||||||||||||||||||
RBAM_034830__      1 MYYGELKTFIAVVEEKNFTKAAQKLMISQPSVSLHIKNLEKEFQTALLNR     50

BSNT_05761___     51 SPKHFTTTPTGDILYQRAKQMVFLYEQAKAEIYAHHHYVKGELKIAASFT    100
                     |||||||||||||||||||||||||||||:|||||||||||:||||||||
RBAM_034830__     51 SPKHFTTTPTGDILYQRAKQMVFLYEQAKSEIYAHHHYVKGKLKIAASFT    100

BSNT_05761___    101 IGEYILPPLLAQLQKLYPELNLDVMIGNTEEVSERVRMLQADIGLIEGHT    150
                     |||||||||||:|...||||||||||||||||||.|||||||||||||||
RBAM_034830__    101 IGEYILPPLLAKLHDEYPELNLDVMIGNTEEVSEAVRMLQADIGLIEGHT    150

BSNT_05761___    151 NENELEIEPFMEDEMCIAAPNQHPLAGRKEISISDLQNEAWVTREKGSGT    200
                     .:|||:|:||||||:||||||.|||||||.|..::|||:|||||||||||
RBAM_034830__    151 GKNELDIQPFMEDELCIAAPNGHPLAGRKNIPAAELQNQAWVTREKGSGT    200

BSNT_05761___    201 REYLDHVLSSNGLRPKSMFTISSNQGVKEAVINGMGLSVLSRSVLHKDLI    250
                     ||||||||.|||||||||.|||||||||||||:||||||||:|||.|||:
RBAM_034830__    201 REYLDHVLQSNGLRPKSMMTISSNQGVKEAVISGMGLSVLSKSVLQKDLL    250

BSNT_05761___    251 HREISILHIKDFSLKRKLSYIHSPLMENTKNKEIFITMLKSNYQSQLLK    299
                     |..||:|.||.||||||||.|.|.:|||||||||||.:|||.:||...:
RBAM_034830__    251 HGSISVLEIKGFSLKRKLSIIQSSIMENTKNKEIFIALLKSQFQSSQAE    299


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.