Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05617 and RBAM_033930

See DNA alignment / Visit BSNT_05617 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:06
# Commandline: needle
#    -asequence pep-align/BSNT_05617___ywmB.1.9828.seq
#    -bsequence pep-align/RBAM_033930___ywmB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05617___ywmB-RBAM_033930___ywmB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05617___ywmB-RBAM_033930___ywmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05617___ywmB
# 2: RBAM_033930___ywmB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 248
# Identity:     174/248 (70.2%)
# Similarity:   209/248 (84.3%)
# Gaps:           2/248 ( 0.8%)
# Score: 929.0
# 
#
#=======================================

BSNT_05617___      1 MNMKKKQVSHAIIISVMLSFVIAVFHTIHASELTPLAQMAEGMERQDVSI     50
                       ||||:....|:..|.||.:|||||:||||||:||||:|||||||.|::
RBAM_033930__      1 --MKKKRAGRIILFFVFLSTLIAVFHSIHASELSPLAQIAEGMERQQVTV     48

BSNT_05617___     51 DKWTLHAKQNMSLTEKEFYQKVQRLKSEYRQYDWVIAREDKMIKAIGTYT    100
                     |:||||||:|::|:..||..||:.||::|.||.|..|||||::||:|||:
RBAM_033930__     49 DEWTLHAKKNLNLSLSEFDDKVKELKTQYPQYHWESAREDKIVKAVGTYS     98

BSNT_05617___    101 DKKNRTSFRLQLVTTLKKHNPTSYLLYEQMSLETPDSWNDTYEQFERETL    150
                     ||||.|:|:||||||||..||||||||||||.|.|::||||||||||:..
RBAM_033930__     99 DKKNHTTFKLQLVTTLKNQNPTSYLLYEQMSPEQPENWNDTYEQFERQAH    148

BSNT_05617___    151 GIFQEKVVIFTCLNGHLDDNMNIVLQKKANQLLNEFQARSVEHVVEPNFV    200
                     .|||.||.|||||.|||:|||:|||||||.||:.||:|..|||||||:||
RBAM_033930__    149 DIFQNKVFIFTCLKGHLNDNMSIVLQKKAEQLMKEFEASPVEHVVEPHFV    198

BSNT_05617___    201 SISAFTDEWEEYIMTSKHKMNLQIALRSAEMGGKHTVTVGTPIVTTEY    248
                     |:||||.:|.:||||||||||:|:|||||.||.|||||||||||||||
RBAM_033930__    199 SVSAFTYKWTDYIMTSKHKMNVQVALRSAGMGEKHTVTVGTPIVTTEY    246


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