Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05002 and RBAM_030680

See DNA alignment / Visit BSNT_05002 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:33
# Commandline: needle
#    -asequence pep-align/BSNT_05002___yvgX.1.9828.seq
#    -bsequence pep-align/RBAM_030680___copA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05002___yvgX-RBAM_030680___copA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05002___yvgX-RBAM_030680___copA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05002___yvgX
# 2: RBAM_030680___copA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 812
# Identity:     638/812 (78.6%)
# Similarity:   715/812 (88.1%)
# Gaps:           8/812 ( 1.0%)
# Score: 3264.0
# 
#
#=======================================

BSNT_05002___      1 --MLSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNV     48
                       .|||.||:.:||.||||||||:|||||||||.||.||:||||.||||:
RBAM_030680__      1 MRALSEPKEMTIQVGGMTCAACASRIEKGLKRMDGVNDASVNLALETSNI     50

BSNT_05002___     49 IYDPAETGTAAIQEKIEKLGYHVVTEKAEFDIEGMTCAACANRIEKRLNK     98
                     .|.|.:....||::||||||||||||||||.|||||||||||||||||||
RBAM_030680__     51 SYQPDKIEAGAIKDKIEKLGYHVVTEKAEFQIEGMTCAACANRIEKRLNK    100

BSNT_05002___     99 IEGVANAPVNFALETVTVEYNPKEASVGDLKEAVDKLGYKLKLKGEQDSE    148
                     :.||.:||||||||||||||||||.:..:|||.|.||||:|..|...|.:
RBAM_030680__    101 VGGVDSAPVNFALETVTVEYNPKEVTPKELKETVAKLGYRLDEKQAVDGD    150

BSNT_05002___    149 AA-AAKKKEERKQTARLIFSAVLSFPLLWAMVSHFTFTSFIWVPDIFLNP    197
                     .. :.|:||:|||..||||||||||||||:|||||:||||||:|||.:||
RBAM_030680__    151 GGLSQKEKEQRKQLIRLIFSAVLSFPLLWSMVSHFSFTSFIWMPDILMNP    200

BSNT_05002___    198 WMQFALATPVQFLIGWPFYVGAYKALRNKSANMDVLVALGTTAAYAYSLY    247
                     |:|||||||||.:||||||:||||||||||||||||||||||||||||||
RBAM_030680__    201 WLQFALATPVQLVIGWPFYMGAYKALRNKSANMDVLVALGTTAAYAYSLY    250

BSNT_05002___    248 LTFQSLGSHGHTDGLYYETSAILLTLILLGKLFETKAKGRSSDAIKKLMK    297
                     :|..|||..||.:|||||||||||||||||||.|.|||||||:|||||||
RBAM_030680__    251 MTIASLGRDGHVEGLYYETSAILLTLILLGKLLEMKAKGRSSEAIKKLMK    300

BSNT_05002___    298 LQAKTATVVRDGQEQIIPIDEVLVNDIVYVKPGERIPVDGEVVEGRSAVD    347
                     ||||||.|.|:|:.|:||||||...||||||||||:||||||:||.||:|
RBAM_030680__    301 LQAKTAAVEREGKVQVIPIDEVRTGDIVYVKPGERVPVDGEVIEGHSAID    350

BSNT_05002___    348 ESMITGESLPVDKNPGDSVTGSTVNANGFLKIKAVNVGKDTALSHIIKIV    397
                     ||||||||:||||:||.:|||:|:||||||||:||||||||||:||||||
RBAM_030680__    351 ESMITGESMPVDKSPGSTVTGATINANGFLKIRAVNVGKDTALAHIIKIV    400

BSNT_05002___    398 EEAQGSKAPIQRLADQISGIFVPIVLGIAVLTFLIWYLWAAPGDFAEAIS    447
                     |||||||||||||||.|||||||||||:|||||||||:|||||.|:|||.
RBAM_030680__    401 EEAQGSKAPIQRLADHISGIFVPIVLGLAVLTFLIWYVWAAPGQFSEAIG    450

BSNT_05002___    448 KFIAVLVIACPCALGLATPTSIMAGSGRAAEFGILFKGGEHLEKTHRLDT    497
                     |||||||||||||||||||||||||||||||||||||||||||||.||.|
RBAM_030680__    451 KFIAVLVIACPCALGLATPTSIMAGSGRAAEFGILFKGGEHLEKTQRLTT    500

BSNT_05002___    498 IVLDKTGTVTNGKPRLTDAIPFGHFEEKDLLQFAAAAETGSEHPLGEAII    547
                     ||||||||||||:|.||||:|.....|::||:.||||||||||||||||:
RBAM_030680__    501 IVLDKTGTVTNGRPVLTDAVPAEGMNEEELLRLAAAAETGSEHPLGEAIV    550

BSNT_05002___    548 AGVKDKGLEIPKLTRFEAKVGAGILAEAGGKSILVGTRKLMESEQVEHGA    597
                     :|.:.:|:.|||:|||:|::|:||.|||.|::||.|:|:|||||.:||.|
RBAM_030680__    551 SGAEKRGIAIPKITRFQARIGSGIYAEADGRTILAGSRRLMESEHIEHEA    600

BSNT_05002___    598 LLAQMEELEAEGKTVMLVSIDGEAAGLVAVADTIKDTSRKAVARLKELGL    647
                     ||..|..||||||||||::.||:||||:||||||||||..||.||.::||
RBAM_030680__    601 LLPHMARLEAEGKTVMLIAADGKAAGLIAVADTIKDTSPAAVKRLNDMGL    650

BSNT_05002___    648 DVIMMTGDNRRTAEAIAKEAGIANIIAEVLPEQKAAEIARLQKEGRQTAM    697
                     |||||||||::|||||||.|||.::|||||||||||||.|||||||:.||
RBAM_030680__    651 DVIMMTGDNKKTAEAIAKAAGIGSVIAEVLPEQKAAEIYRLQKEGRRVAM    700

BSNT_05002___    698 VGDGINDAPALATADIGMAIGTGTDIAMETADITLIRGDLNSIADAIRMS    747
                     ||||||||||||.||||||||||||||||.|||||||||||.|||||.||
RBAM_030680__    701 VGDGINDAPALAVADIGMAIGTGTDIAMEAADITLIRGDLNGIADAIGMS    750

BSNT_05002___    748 RLTMKNIKQNLFWALGYNSLGIPIAALGFLAPWIAGAAMAFSSVSVVLNA    797
                     ||||:||||||.|||||||:||||||.||||||:||||||||||||||||
RBAM_030680__    751 RLTMRNIKQNLGWALGYNSIGIPIAAAGFLAPWVAGAAMAFSSVSVVLNA    800

BSNT_05002___    798 LRLQKVK-----    804
                     |||||||     
RBAM_030680__    801 LRLQKVKKDKMG    812


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